E. coli Downloads

On this page you can download predictions for the E. coli genome.
A zip file with one file per TF model where each file is the prediction for one TF model on the entire ecoli genome (accession = U0096.3, length = 4641652). Each file contains three columns pos: the position along the genome forward: the score on the forward strand reverse: the score in the reverse strand The scores are calculate at each position by applying the weight matrix and bias to that position and then exponentiating the result.