E. coli Promoter Predictions
On this page you can access predictions of all E. coli TFs models on 3297 promoters regions. Promoter regions are named by the RegulonDB list of
Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for
a TF and 0 is a the average score across all promoters for each TF. For each TF, promoters are ranked with 1 being the strongest scoring promoter. Only promoters with at least one TF hit scoring above 0.2
are shown.
Type in the header boxes to filter rows. Click headers to sort columns. See text above for help.
| Transcription Unit | TFs | #TFs | Scores | Ranks |
|---|---|---|---|---|
| aaaD | yagI, aaeR, yafN | 3 | 0.30; 0.40; 0.10 | 31, 60, 259 |
| aaaE | yhjC, nrdR | 2 | 0.10; 0.17 | 33, 60 |
| aaeB-aaeA-aaeX | aaeR, pdhR, yncC, cynR, yeiI, ulaR, dicC | 7 | 0.94; 0.13; 0.20; 0.12; 0.14; 0.12; 0.12 | 2, 53, 161, 248, 321, 328, 432 |
| aaeR | aaeR, pdhR, yncC, cynR, yeiI, ulaR, dicC | 7 | 0.94; 0.13; 0.20; 0.12; 0.14; 0.12; 0.10 | 3, 54, 161, 249, 322, 327, 524 |
| aat | ybhD, yeiI, yidZ, lldR, dicA, deoR | 6 | 0.11; 0.29; 0.24; 0.13; 0.15; 0.13 | 46, 110, 139, 173, 207, 233 |
| abgR | hcaR, matA, treR, iclR, sxy, ybaQ, ulaR, nac | 8 | 0.64; 0.29; 0.12; 0.21; 0.18; 0.19; 0.13; 0.13 | 4, 11, 153, 185, 193, 269, 280, 329 |
| abrB | yidZ, ulaR, cynR | 3 | 0.35; 0.23; 0.11 | 73, 99, 288 |
| accA | hdfR, treR, uxuR, ttk, yidZ | 5 | 0.13; 0.18; 0.10; 0.13; 0.12 | 12, 84, 289, 364, 412 |
| accB-accC,accB-accC-yhdT | dicA, cusR, deoR, yjjQ, ybaQ | 5 | 0.31; 0.11; 0.18; 0.11; 0.12 | 27, 54, 127, 333, 490 |
| accD,cvpA-dedD-folC-accD,dedD-folC-accD | yjjQ, yagI, arsR, yeiI | 4 | 0.27; 0.12; 0.14; 0.10 | 100, 181, 320, 446 |
| aceB-aceA-aceK,aceB-aceA | iclR, cynR, gadW, gcvA, ypdC, deoR | 6 | 0.58; 0.33; 0.13; 0.15; 0.13; 0.14 | 9, 27, 98, 114, 224, 228 |
| aceE-aceF | yeiI, treR, ycjW, arsR, yjjQ, sxy | 6 | 0.50; 0.23; 0.14; 0.17; 0.15; 0.12 | 35, 49, 57, 216, 242, 309 |
| aceK | cysB | 1 | 0.24 | 82 |
| ackA,ackA-pta | yheO, arsR, cadC, cbl, fimZ, sfsB | 6 | 1.00; 0.34; 0.16; 0.17; 0.14; 0.14 | 2, 50, 55, 111, 230, 291 |
| acnA | yhjC, treR, fimZ, aaeR | 4 | 0.53; 0.13; 0.11; 0.15 | 3, 150, 288, 353 |
| acnA-ymiC | yhjC, exuR, treR, fimZ, aaeR | 5 | 0.54; 0.15; 0.13; 0.11; 0.15 | 2, 35, 149, 288, 354 |
| acnB,acnB-yacL | iscR, treR, ulaR, deoR, arsR | 5 | 0.12; 0.14; 0.19; 0.14; 0.12 | 106, 131, 160, 229, 368 |
| acpH | cysB, gcvA | 2 | 0.27; 0.12 | 57, 189 |
| acpP-fabF-pabC,acpP,acpP-fabF-pabC-yceG,acpP-fabF | allR, yheO, pdhR, cynR, dicC | 5 | 0.17; 0.25; 0.14; 0.19; 0.12 | 15, 15, 42, 110, 455 |
| acpS-pdxJ | yafN, mraZ, ybaQ | 3 | 0.17; 0.10; 0.12 | 92, 135, 488 |
| acpS-pdxJ-recO-era-rnc,era-rnc,rnc | ttk, argP, nrdR, sfsB, yidZ | 5 | 0.67; 0.31; 0.10; 0.14; 0.14 | 4, 81, 197, 284, 362 |
| acpT | cpxR, matA | 2 | 0.15; 0.14 | 66, 66 |
| acrB | yidZ, yagI, yjjQ | 3 | 0.35; 0.16; 0.11 | 72, 121, 342 |
| acrB-acrA,acrA | yheO, deoR, iclR | 3 | 0.17; 0.15; 0.10 | 30, 182, 497 |
| acrD | dicC, yidZ | 2 | 0.16; 0.12 | 297, 410 |
| acrE-acrF | srlR, argP, yncC, argR, dicC, ulaR, nac, dicA, sfsB | 9 | 0.18; 0.38; 0.27; 0.21; 0.20; 0.13; 0.14; 0.11; 0.11 | 11, 47, 108, 124, 209, 282, 283, 319, 362 |
| acrR | yheO, yjjQ, arsR, deoR | 4 | 0.17; 0.27; 0.23; 0.15 | 31, 101, 131, 181 |
| acrZ | nrdR, sfsB, ttk | 3 | 0.15; 0.24; 0.12 | 84, 128, 403 |
| actP | yafN, yagI | 2 | 0.20; 0.11 | 69, 215 |
| actP-yjcH-acs,acs | iscR, aaeR, nsrR, rutR, gadW, arsR, deoR, sfsB | 8 | 0.26; 0.44; 0.10; 0.12; 0.11; 0.20; 0.14; 0.12 | 24, 45, 117, 122, 130, 153, 209, 346 |
| acuI | deoR, yjjQ | 2 | 0.27; 0.10 | 40, 352 |
| ada-apbE-ompC,ompC | ompR, marA, argP, cpxR, ulaR, cysB, aaeR, dicA | 8 | 0.56; 0.10; 0.30; 0.11; 0.18; 0.16; 0.22; 0.11 | 2, 49, 90, 128, 177, 186, 219, 321 |
| add | marA, arsR, lldR, yafN, gcvA, yncC | 6 | 0.12; 0.33; 0.16; 0.12; 0.11; 0.11 | 35, 56, 104, 191, 198, 393 |
| adeD | yafN, fimZ, yeiE, yeiI, cynR, arsR | 6 | 0.20; 0.20; 0.12; 0.24; 0.14; 0.14 | 70, 143, 144, 150, 181, 299 |
| adeP | purR, yheO, arsR, tyrR, nac, cynR, dicC | 7 | 0.17; 0.16; 0.24; 0.11; 0.16; 0.12; 0.11 | 4, 36, 114, 128, 233, 237, 483 |
| adeQ | yafN, fimZ, yeiE, cynR, yeiI, arsR | 6 | 0.20; 0.20; 0.12; 0.14; 0.20; 0.14 | 71, 142, 145, 181, 213, 299 |
| adhE | dicC, galS, dicA, gadW, cpxR | 5 | 0.51; 0.13; 0.27; 0.14; 0.12 | 11, 47, 51, 87, 107 |
| adhP | fimZ | 1 | 0.13 | 256 |
| adiA | ypdC, cbl, matA, cynR, yncC, deoR | 6 | 0.27; 0.21; 0.11; 0.16; 0.16; 0.11 | 56, 65, 123, 146, 240, 318 |
| adiC | ydfH, paaX, nsrR, cysB, gcvA, argP, cbl, sfsB | 8 | 0.28; 0.15; 0.16; 0.22; 0.13; 0.20; 0.11; 0.16 | 2, 3, 29, 100, 154, 198, 211, 238 |
| adiY | cysB, nagC, cynR, tyrR, melR, arsR, fimZ, sfsB, argP | 9 | 0.31; 0.11; 0.22; 0.13; 0.14; 0.18; 0.15; 0.12; 0.13 | 39, 60, 81, 97, 146, 210, 215, 340, 344 |
| adk | yheO, melR | 2 | 0.11; 0.13 | 100, 158 |
| aegA | deoR, yeiE, yeiI | 3 | 0.21; 0.17; 0.27 | 85, 85, 128 |
| aer | glnG, ttk, dicA | 3 | 0.28; 0.25; 0.13 | 17, 137, 260 |
| aes | racR, ycjW, ybaQ, dicA, uxuR, yagI, dicC | 7 | 0.10; 0.13; 0.26; 0.17; 0.12; 0.10; 0.12 | 49, 63, 144, 169, 211, 238, 463 |
| afuC-afuB-insB-2-insA-2-insAB2 | yddM, nrdR | 2 | 0.14; 0.14 | 35, 99 |
| agaR | agaR, iclR, ttk, uxuR, ypdC, yafN, sfsB, dicC | 8 | 1.00; 0.57; 0.34; 0.12; 0.13; 0.10; 0.13; 0.13 | 1, 10, 68, 225, 225, 238, 303, 401 |
| agaS-kbaY-agaB-agaC-agaD-agaI | agaR, nac, yeiE, sfsB, argR, yjjQ | 6 | 0.80; 0.20; 0.10; 0.13; 0.12; 0.11 | 3, 181, 193, 309, 314, 340 |
| agp | deoR, sxy, dicA, matA, argR, ttk | 6 | 0.49; 0.71; 0.32; 0.10; 0.14; 0.15 | 3, 6, 23, 139, 275, 304 |
| agrA | relE, lexA, ttk, yncC, deoR | 5 | 0.31; 0.11; 0.20; 0.15; 0.10 | 21, 26, 183, 259, 348 |
| agrB | lexA, arsR, ttk, relE, yncC | 5 | 0.11; 0.39; 0.42; 0.19; 0.15 | 27, 29, 47, 49, 261 |
| ahpC,ahpC-ahpF | yeiE, hcaR, cpxR, ttk, aaeR, dicA, ybaQ | 7 | 0.62; 0.28; 0.18; 0.36; 0.33; 0.12; 0.14 | 5, 9, 42, 64, 109, 292, 400 |
| ahpF | uxuR, ybaQ, ttk | 3 | 0.14; 0.21; 0.11 | 167, 221, 442 |
| ahr | deoR, treR, dicC | 3 | 0.22; 0.11; 0.14 | 71, 205, 342 |
| aidB | matA, gadW, yafN, ybaQ, dicA, yncC, dicC | 7 | 0.20; 0.21; 0.23; 0.26; 0.19; 0.13; 0.11 | 31, 38, 41, 135, 137, 323, 493 |
| ais | srlR, yegW, basR, modE, ulaR, yheO, nrdR, melR, cbl, yncC, argP | 11 | 0.32; 0.12; 0.19; 0.11; 0.42; 0.13; 0.16; 0.18; 0.14; 0.11; 0.12 | 5, 14, 17, 17, 22, 70, 74, 94, 150, 367, 388 |
| alaA-yfbR,alaA | aaeR, yhfR, dicC, yagI, dicA, ulaR, sxy, argR | 8 | 0.83; 0.13; 0.27; 0.15; 0.15; 0.15; 0.16; 0.11 | 8, 24, 89, 138, 208, 223, 236, 333 |
| alaC | iscR, ypdC, argP, ulaR, cynR, fimZ, dicA | 7 | 0.40; 0.31; 0.31; 0.23; 0.15; 0.12; 0.13 | 7, 49, 83, 102, 169, 267, 272 |
| alaE | fimZ, yjiR, arsR, ybhD, cynR, argR, melR, yafN, ttk, yidZ | 10 | 0.52; 0.11; 0.38; 0.11; 0.25; 0.26; 0.15; 0.12; 0.13; 0.10 | 24, 25, 34, 47, 56, 88, 136, 177, 381, 502 |
| alaX-alaW | sfsB, rutR, yncC, ttk, sxy, dicC, yeiI, argP, ybaQ | 9 | 1.00; 0.30; 0.44; 0.31; 0.22; 0.23; 0.18; 0.10; 0.11 | 1, 10, 55, 84, 133, 140, 239, 435, 514 |
| aldA | argP, ycjW, fimZ, ybaQ, tyrR, yidZ, dicA, deoR | 8 | 0.61; 0.13; 0.22; 0.26; 0.11; 0.20; 0.14; 0.10 | 14, 60, 133, 134, 137, 220, 254, 356 |
| aldB | mraZ, envY | 2 | 0.17; 0.13 | 44, 84 |
| alkA | yncC, uxuR, yjjQ | 3 | 0.17; 0.11; 0.12 | 215, 274, 297 |
| alkB | matA | 1 | 0.22 | 19 |
| alkB-ada | yidZ, yjjQ, yeiI, dicC | 4 | 0.35; 0.23; 0.24; 0.15 | 76, 136, 154, 318 |
| allA | allR, nrdR, treR, yeiI, yheO, fimZ, ypdC, iclR, deoR | 9 | 0.90; 0.29; 0.26; 0.45; 0.11; 0.23; 0.14; 0.19; 0.12 | 2, 11, 33, 49, 107, 126, 204, 222, 280 |
| allB | pepA, betI, melR, yeiE, arsR | 5 | 0.13; 0.13; 0.15; 0.12; 0.10 | 11, 14, 141, 150, 445 |
| allE-allC-allD | fimZ, matA, cynR, cysB, aaeR | 5 | 1.00; 0.17; 0.22; 0.12; 0.11 | 1, 51, 80, 302, 518 |
| allR,allR-gcl-hyi | treR, iscR, mraZ, cynR, fimZ, argP, dicA, deoR, sxy, nac | 10 | 0.25; 0.17; 0.14; 0.18; 0.22; 0.25; 0.16; 0.11; 0.10; 0.11 | 39, 46, 76, 119, 130, 135, 190, 313, 361, 388 |
| allS | allR, nrdR, treR, yeiI, iscR, yheO, fimZ, ypdC, iclR, deoR | 10 | 0.90; 0.29; 0.26; 0.45; 0.16; 0.11; 0.23; 0.14; 0.19; 0.12 | 3, 11, 34, 49, 54, 106, 127, 203, 222, 280 |
| alpA | asnC, lldR, arsR, yeiE, aaeR, cynR, nrdR, sxy, deoR, iclR, argP, ttk | 12 | 0.11; 0.19; 0.30; 0.19; 0.37; 0.21; 0.13; 0.21; 0.16; 0.18; 0.18; 0.12 | 19, 67, 68, 71, 85, 85, 110, 142, 158, 238, 241, 413 |
| alr | ybaQ | 1 | 0.17 | 311 |
| alsE-alsC-alsA-alsB | allR, yjjQ, yeiI, cbl, dicC, nac | 6 | 0.19; 0.34; 0.31; 0.12; 0.20; 0.12 | 14, 59, 99, 202, 221, 366 |
| alsE-alsC-alsA-alsB-rpiR,alsA-alsB-rpiR,alsB-rpiR,rpiR | sfsB, srlR, iclR, uxuR, fimZ, argP | 6 | 0.54; 0.12; 0.26; 0.14; 0.11; 0.11 | 18, 32, 111, 169, 296, 399 |
| alsK | cbl, ypdC, ulaR, nac | 4 | 0.44; 0.21; 0.19; 0.17 | 7, 94, 165, 221 |
| alx | ttk, matA, rutR, ybaQ, deoR | 5 | 0.47; 0.14; 0.14; 0.26; 0.13 | 23, 68, 96, 145, 259 |
| amiA-hemF | ycjW, ulaR, arsR, yidZ | 4 | 0.22; 0.15; 0.16; 0.11 | 15, 226, 233, 449 |
| amiC | argR, lldR, yeiI, envY, uxuR, fimZ, ypdC | 7 | 0.75; 0.28; 0.35; 0.11; 0.15; 0.12; 0.11 | 9, 29, 78, 128, 150, 283, 308 |
| amn | yeiI | 1 | 0.80 | 8 |
| ampC | cysB, fimZ, ybaQ | 3 | 0.17; 0.13; 0.12 | 164, 242, 494 |
| ampD-ampE | relE, argP, sfsB, aaeR, fimZ, yjjQ, ulaR, dicC | 8 | 0.22; 0.37; 0.21; 0.27; 0.16; 0.11; 0.11; 0.12 | 40, 51, 151, 152, 201, 338, 349, 436 |
| ampG | ybaQ, yagI | 2 | 0.26; 0.11 | 130, 203 |
| ampG-yajG,yajG | sfsB, hcaR, cynR, treR, ulaR | 5 | 0.81; 0.11; 0.19; 0.15; 0.12 | 4, 37, 107, 124, 301 |
| ampH | ycjW, nac | 2 | 0.26; 0.18 | 11, 197 |
| amyA | uxuR, deoR, arsR | 3 | 0.14; 0.15; 0.14 | 163, 193, 307 |
| ansA-pncA | treR, dicA, ulaR, yidZ | 4 | 0.12; 0.15; 0.13; 0.11 | 168, 209, 266, 464 |
| ansB | lldR, iclR, allR, yhaJ, mraZ, tyrR, yncC, deoR, cynR | 9 | 0.39; 0.46; 0.16; 0.11; 0.10; 0.11; 0.19; 0.11; 0.10 | 10, 18, 23, 74, 127, 168, 176, 298, 300 |
| ansP | cysB, galS, dicA, iclR, ttk, aaeR, gadW, ybaQ | 8 | 0.53; 0.12; 0.25; 0.29; 0.31; 0.31; 0.12; 0.19 | 10, 66, 74, 77, 77, 121, 125, 253 |
| apaH-apaG | modE, zur, cynR, iclR, ttk, yncC, yidZ | 7 | 0.12; 0.10; 0.19; 0.25; 0.18; 0.12; 0.12 | 7, 21, 109, 123, 221, 357, 405 |
| apaH-apaG-rsmA | aaeR, glnG, dicC, ybaQ | 4 | 0.82; 0.16; 0.32; 0.16 | 9, 58, 59, 353 |
| apaH-apaG-rsmA-pdxA,rsmA-pdxA | ybaQ, ypdC, mraZ, rutR, uxuR, ttk | 6 | 0.43; 0.22; 0.12; 0.10; 0.10; 0.13 | 39, 84, 106, 152, 278, 379 |
| apaH-apaG-rsmA-pdxA-surA,surA,rsmA-pdxA-surA | uxuR, yncC, glnG, rutR, dicC, yagI, dicA | 7 | 0.38; 0.32; 0.11; 0.10; 0.22; 0.13; 0.12 | 18, 88, 111, 150, 155, 175, 316 |
| apbE | cbl, uxuR | 2 | 0.22; 0.13 | 54, 186 |
| aphA-yjbQ-yjbR,aphA | ycjZ, cadC, yidZ, yjjQ, argP, sfsB, aaeR, ybaQ | 8 | 0.10; 0.13; 0.31; 0.21; 0.19; 0.15; 0.15; 0.15 | 37, 79, 97, 164, 219, 272, 357, 374 |
| appA | yhfR, uxuR, sfsB, nrdR, yidZ | 5 | 0.19; 0.24; 0.36; 0.12; 0.23 | 2, 55, 66, 130, 152 |
| appY | ygiT, argP, mraZ, srlR, aaeR, ulaR, cynR, gcvA, iclR | 9 | 0.17; 0.75; 0.24; 0.12; 0.47; 0.18; 0.14; 0.11; 0.14 | 6, 7, 14, 31, 34, 183, 199, 204, 373 |
| apt,apt-dnaX-ybaB | yidZ, ulaR, deoR, arsR, ttk | 5 | 0.33; 0.23; 0.16; 0.19; 0.14 | 82, 97, 160, 174, 349 |
| aqpZ | cysB, iscR, pdhR, matA, aaeR, yeiI, yidZ, argP | 8 | 0.27; 0.14; 0.10; 0.11; 0.28; 0.20; 0.15; 0.11 | 58, 83, 90, 135, 146, 199, 310, 408 |
| araC,araC-yabI | iclR, lldR, ypdC, nac, cadC, cpxR, ybaQ | 7 | 0.54; 0.25; 0.21; 0.30; 0.10; 0.11; 0.22 | 13, 43, 90, 100, 129, 133, 214 |
| araD-araA-araB,araA-araB | iclR, lldR, ypdC, nac, cadC, cpxR, ybaQ | 7 | 0.54; 0.25; 0.21; 0.30; 0.10; 0.11; 0.22 | 14, 43, 90, 99, 128, 133, 214 |
| araG-araF-araH | pdhR, kdgR, exuR, dicA, yidZ, arsR, cbl, sxy, matA, iscR, yjjQ, deoR, ypdC, ybaQ | 14 | 0.21; 0.14; 0.15; 0.29; 0.40; 0.24; 0.17; 0.21; 0.10; 0.10; 0.17; 0.12; 0.11; 0.12 | 17, 18, 34, 35, 44, 109, 115, 140, 141, 142, 207, 283, 305, 450 |
| araJ | melR, cynR, yeiE, yidZ | 4 | 0.20; 0.22; 0.12; 0.17 | 68, 78, 141, 276 |
| arcA | yciT, galS, cynR, treR, iclR | 5 | 0.11; 0.11; 0.14; 0.10; 0.14 | 52, 88, 193, 225, 379 |
| arcB | glnG, ybaQ, sxy, ypdC | 4 | 0.19; 0.32; 0.13; 0.11 | 34, 84, 282, 292 |
| arcZ | arsR, sfsB, argP, yeiI | 4 | 0.74; 0.42; 0.19; 0.11 | 4, 40, 221, 424 |
| argA | argR, lldR, yeiI, envY, uxuR, fimZ, ypdC | 7 | 0.75; 0.28; 0.35; 0.11; 0.15; 0.12; 0.11 | 9, 30, 78, 127, 149, 282, 308 |
| argC-argB-argH | argR, matA, srlR, glnG, ulaR, sfsB, yeiI | 7 | 1.00; 0.26; 0.13; 0.18; 0.21; 0.15; 0.12 | 1, 16, 26, 46, 130, 268, 374 |
| argD | ulaR, mraZ, argR, yeiI, deoR | 5 | 0.36; 0.14; 0.17; 0.16; 0.11 | 48, 73, 191, 276, 326 |
| argD-pabA,pabA | uxuR | 1 | 0.43 | 9 |
| argE | argR, srlR, glnG, ulaR, sfsB, yeiI | 6 | 1.00; 0.13; 0.18; 0.21; 0.15; 0.12 | 1, 25, 46, 130, 267, 375 |
| argG | ycjW, argR, relE, ybaQ, ulaR | 5 | 0.44; 0.68; 0.27; 0.19; 0.12 | 2, 16, 30, 259, 320 |
| argH | lldR, argR, dicC, ybaQ | 4 | 0.23; 0.15; 0.17; 0.18 | 53, 236, 274, 286 |
| argI | argR, yjjQ, nac, uxuR, yeiI, aaeR | 6 | 0.68; 0.24; 0.17; 0.11; 0.12; 0.11 | 19, 115, 213, 265, 373, 525 |
| argL | yncC, galS, argR, argP | 4 | 0.86; 0.11; 0.25; 0.21 | 10, 91, 95, 187 |
| argP | ybaQ, yncC | 2 | 0.15; 0.11 | 382, 382 |
| argQ | relE, fimZ | 2 | 1.00; 0.10 | 1, 324 |
| argQ-argZ-argY-argV-serV | relE, pspF, gadW, cpxR, uxuR, cysB | 6 | 1.00; 0.16; 0.21; 0.19; 0.11; 0.10 | 1, 8, 30, 32, 233, 367 |
| argR | cbl, argR, yafN, cysB, ulaR, gcvA, yidZ, dicC, argP | 9 | 0.41; 0.61; 0.18; 0.18; 0.19; 0.11; 0.15; 0.14; 0.12 | 10, 22, 80, 148, 149, 199, 312, 356, 365 |
| argS,argS-yecT | cusR, yhjC, argP | 3 | 0.18; 0.10; 0.27 | 13, 29, 122 |
| argU | yheO, arsR | 2 | 0.11; 0.14 | 111, 288 |
| argW | nrdR, ycjW, fimZ, argP | 4 | 0.24; 0.12; 0.14; 0.16 | 26, 75, 224, 274 |
| argX-hisR-leuT-proM | paaX, cbl, ycjW, yidZ | 4 | 0.13; 0.41; 0.14; 0.26 | 4, 12, 56, 129 |
| ariR | cbl, melR, yeiE, yeiI, sfsB, dicA, ulaR | 7 | 0.36; 0.18; 0.13; 0.25; 0.19; 0.16; 0.16 | 17, 91, 128, 142, 175, 192, 209 |
| arnB-arnC-arnA-arnD-arnT-arnF-arnE | srlR, yegW, basR, modE, ulaR, yheO, yddM, nrdR, melR, cbl, yncC, argP | 12 | 0.32; 0.12; 0.19; 0.11; 0.42; 0.13; 0.10; 0.16; 0.18; 0.14; 0.11; 0.12 | 5, 14, 17, 18, 23, 71, 73, 74, 95, 149, 367, 388 |
| aroB | iclR, yafN, argR, deoR | 4 | 0.28; 0.11; 0.12; 0.10 | 81, 223, 320, 364 |
| aroD-ydiF,aroD | allR, arsR, sfsB, yidZ | 4 | 0.11; 0.18; 0.11; 0.11 | 84, 201, 361, 444 |
| aroG | iscR, envY, yagI, dicC | 4 | 0.17; 0.11; 0.11; 0.11 | 44, 117, 204, 473 |
| aroH | trpR, mraZ, sfsB, rutR, lldR, ttk, sxy, fimZ, aaeR | 9 | 0.20; 0.21; 0.42; 0.15; 0.15; 0.23; 0.20; 0.12; 0.14 | 8, 20, 44, 73, 120, 154, 160, 279, 392 |
| aroL-yaiA-aroM,aroL-yaiA | yeiE, trpR, dicA, tyrR, ttk, lldR, yafN, yncC, argP | 9 | 0.29; 0.11; 0.28; 0.15; 0.32; 0.18; 0.16; 0.18; 0.15 | 30, 31, 42, 71, 72, 79, 117, 192, 299 |
| aroM | yfeC, tyrR, cadC | 3 | 1.00; 0.24; 0.16 | 1, 21, 47 |
| aroP | deoR, envY, tyrR, argR, iclR, sxy | 6 | 0.31; 0.19; 0.19; 0.34; 0.22; 0.13 | 27, 44, 49, 59, 155, 280 |
| arpA | matA, lldR, argP, deoR | 4 | 0.16; 0.18; 0.23; 0.12 | 56, 87, 169, 264 |
| arpB | sfsB, iclR, argP, argR, deoR, aaeR | 6 | 0.32; 0.27; 0.28; 0.15; 0.11; 0.15 | 84, 101, 112, 234, 323, 361 |
| arrS | purR, ompR, betI, matA, cynR, nrdR, cysB, sfsB, argR, aaeR | 10 | 0.16; 0.12; 0.12; 0.15; 0.20; 0.12; 0.17; 0.16; 0.13; 0.10 | 6, 16, 23, 57, 101, 139, 168, 221, 292, 539 |
| arsR-arsB-arsC | arsR, ttk, relE, iscR, rutR, yncC | 6 | 0.39; 0.42; 0.19; 0.14; 0.12; 0.15 | 30, 46, 49, 71, 118, 259 |
| artJ | yeiI, argR, lldR, nrdR, arsR, ulaR, sfsB | 7 | 0.54; 0.40; 0.19; 0.15; 0.18; 0.15; 0.11 | 28, 46, 72, 88, 191, 239, 385 |
| artM-artQ-artI-artP | argR, treR, ypdC | 3 | 0.59; 0.14; 0.11 | 24, 137, 310 |
| ascB | pdhR, yeiI, yidZ, ybaQ | 4 | 0.42; 0.52; 0.27; 0.26 | 6, 33, 119, 120 |
| ascF-ascB | ascG, ybhD, glnG, ybaQ, aaeR | 5 | 1.00; 0.13; 0.11; 0.18; 0.11 | 1, 26, 117, 290, 500 |
| ascG,hydN-ascG | ascG, ybhD, glnG, ybaQ, aaeR | 5 | 1.00; 0.13; 0.11; 0.18; 0.11 | 2, 26, 118, 290, 499 |
| aslA | lldR, yeiE, argP, iclR, yncC | 5 | 0.24; 0.19; 0.25; 0.18; 0.12 | 47, 75, 138, 241, 332 |
| aslB | paaX, cynR, melR, sfsB | 4 | 0.12; 0.29; 0.15; 0.11 | 5, 39, 142, 353 |
| asmA | ycjW | 1 | 0.17 | 33 |
| asmA-dcd,dcd | ycjW, argP, nagC | 3 | 0.17; 0.40; 0.10 | 34, 38, 66 |
| asmA-dcd-udk,dcd-udk | iclR, cbl | 2 | 0.26; 0.15 | 116, 140 |
| asnA | asnC, nac, cynR, iclR, yafN, treR, envY, matA, argR | 9 | 1.00; 0.79; 0.32; 0.29; 0.19; 0.18; 0.13; 0.12; 0.18 | 2, 4, 33, 72, 75, 87, 92, 95, 183 |
| asnS | dgsA, treR, sxy, deoR | 4 | 0.15; 0.20; 0.18; 0.10 | 51, 67, 180, 363 |
| asnT | yhaJ, argR, deoR, yidZ | 4 | 0.17; 0.43; 0.23; 0.22 | 28, 42, 64, 175 |
| asnU | argP | 1 | 0.12 | 357 |
| asnV | ygiT, iclR, glnG | 3 | 0.12; 0.37; 0.16 | 23, 35, 55 |
| asnW | matA, sfsB | 2 | 0.10; 0.16 | 142, 243 |
| aspC | yjiR, cusR, yddM, yidZ | 4 | 0.34; 0.17; 0.13; 0.13 | 4, 17, 45, 381 |
| aspC-ompF,ompF | ompR, zur, basR, nagC, yheO, nac, yeiI, deoR, cynR, dicA, dicC | 11 | 1.00; 0.14; 0.13; 0.13; 0.11; 0.27; 0.23; 0.15; 0.13; 0.10; 0.12 | 1, 15, 40, 43, 110, 120, 158, 178, 218, 353, 469 |
| aspT | cadC, dicC, relE, argP, tyrR, lldR | 6 | 0.17; 0.35; 0.19; 0.26; 0.11; 0.14 | 42, 46, 47, 127, 141, 155 |
| aspU | cbl, tyrR, lldR | 3 | 0.26; 0.11; 0.14 | 33, 144, 155 |
| aspV | argR, treR, yeiI, yidZ | 4 | 0.21; 0.10; 0.17; 0.16 | 126, 215, 267, 281 |
| asr | rstA, cpxR, yafN, iclR, aaeR | 5 | 1.00; 0.15; 0.11; 0.10; 0.11 | 1, 63, 208, 500, 521 |
| astE-astB-astD-astA-astC | glnG, iclR, argR, cysB, cynR, dicA, ulaR, aaeR | 8 | 0.25; 0.24; 0.19; 0.14; 0.10; 0.11; 0.10; 0.14 | 20, 129, 163, 226, 295, 340, 371, 399 |
| atoD-atoA-atoE-atoB | cpxR, lldR, sxy, argP | 4 | 0.19; 0.21; 0.20; 0.11 | 30, 60, 162, 415 |
| atoS-atoC | lldR, uxuR, ttk | 3 | 0.12; 0.11; 0.11 | 203, 244, 452 |
| atpA-atpH-atpF-atpE-atpB,atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB,atpH-atpF-atpE-atpB | ttk, gcvA | 2 | 0.31; 0.12 | 82, 170 |
| atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI | yheO, ttk, aaeR, lldR, yagI, yeiI | 6 | 0.13; 0.31; 0.33; 0.14; 0.12; 0.19 | 64, 83, 111, 150, 201, 214 |
| atpD | rutR, uxuR | 2 | 0.15; 0.11 | 79, 250 |
| atpG-atpA-atpH-atpF,atpA-atpH-atpF | cadC, ulaR, yjjQ, arsR | 4 | 0.15; 0.17; 0.10; 0.11 | 64, 191, 351, 405 |
| avtA | pspF, yddM, treR | 3 | 0.23; 0.11; 0.18 | 7, 64, 94 |
| azoR | yhaJ, ycjZ, rutR, melR, yeiI | 5 | 0.53; 0.10; 0.18; 0.19; 0.12 | 6, 31, 46, 79, 355 |
| bacA | ttk, hcaR, uxuR, cysB, melR, dicC, yidZ | 7 | 0.63; 0.11; 0.19; 0.17; 0.10; 0.16; 0.13 | 6, 41, 87, 170, 229, 301, 387 |
| baeR-yegP | gadW, yagI, ybaQ | 3 | 0.23; 0.17; 0.14 | 28, 117, 399 |
| baeS-baeR | gcvA, arsR, ybaQ | 3 | 0.18; 0.17; 0.18 | 85, 217, 287 |
| bamA,bamA-skp,bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE | dgoR, envY, ybaQ, sxy, dicC, yafN, dicA, iclR | 8 | 0.11; 0.15; 0.33; 0.27; 0.27; 0.13; 0.13; 0.15 | 6, 73, 77, 82, 90, 163, 265, 336 |
| bamB-yfgM,yfgM | yidZ, rutR, dicC | 3 | 0.53; 0.15; 0.11 | 19, 71, 499 |
| bamB-yfgM-hisS,hisS | rutR, sfsB, aaeR | 3 | 0.11; 0.15; 0.14 | 145, 259, 412 |
| bamD | mraZ, rutR | 2 | 0.19; 0.14 | 31, 88 |
| bamE | ttk | 1 | 0.11 | 438 |
| barA | marA, ybaQ | 2 | 0.10; 0.12 | 46, 454 |
| basS-basR,basR | pdhR, argR, yeiI, yncC | 4 | 0.10; 0.14; 0.11; 0.10 | 94, 257, 408, 410 |
| bax | yheO, ulaR, sfsB | 3 | 0.13; 0.26; 0.33 | 68, 75, 79 |
| baxL | yheO, ulaR, sfsB | 3 | 0.13; 0.26; 0.33 | 68, 73, 79 |
| bcp | betI, yfeC | 2 | 0.10; 0.12 | 34, 83 |
| bcr | uxuR | 1 | 0.43 | 10 |
| bcr-rsuA,rsuA | metR, yagI, ttk, yidZ | 4 | 0.16; 0.11; 0.14; 0.10 | 3, 209, 337, 498 |
| bcsC-bcsZ-bcsB-bcsA | sxy, yidZ, ulaR | 3 | 0.31; 0.28; 0.21 | 71, 116, 136 |
| bcsE-bcsF,bcsE-bcsF-bcsG | hcaR, iscR, cbl, yafN, iclR, aaeR | 6 | 0.14; 0.13; 0.18; 0.11; 0.18; 0.16 | 26, 89, 97, 225, 249, 331 |
| bcsQ | hcaR, cusR, iscR, cbl, yidZ, iclR, aaeR | 7 | 0.14; 0.11; 0.13; 0.18; 0.25; 0.18; 0.16 | 26, 55, 89, 96, 134, 248, 333 |
| bcsQ-yhjR,yhjR | hcaR, iscR, cbl, yafN, iclR, aaeR | 6 | 0.14; 0.13; 0.18; 0.11; 0.18; 0.16 | 26, 89, 98, 233, 249, 331 |
| bcsZ-bcsB | yncC | 1 | 0.11 | 360 |
| bdcA | ypdC, yncC, ttk, iclR | 4 | 0.19; 0.16; 0.10; 0.10 | 118, 241, 478, 505 |
| bepA-yfgD | gcvA, argR, uxuR, iclR | 4 | 0.20; 0.21; 0.15; 0.22 | 67, 118, 141, 162 |
| betA-betB-betI | betI, nrdR, lldR, cadC, yeiE, gcvA | 6 | 1.00; 0.32; 0.26; 0.16; 0.14; 0.13 | 1, 9, 37, 44, 112, 142 |
| betT | betI, lldR, glnG, yeiE, gcvA | 5 | 1.00; 0.26; 0.15; 0.14; 0.13 | 2, 38, 62, 111, 142 |
| bfr-bfd | yagI, dgsA, argP, iclR, ttk | 5 | 0.42; 0.18; 0.24; 0.16; 0.11 | 10, 30, 153, 314, 472 |
| bglA | fabR, dicA, treR, allR, melR, sfsB, dicC, arsR, yidZ | 9 | 0.69; 0.33; 0.25; 0.11; 0.16; 0.19; 0.18; 0.14; 0.16 | 3, 22, 37, 68, 121, 170, 255, 289, 291 |
| bglG,bglB-bglF-bglG | mraZ, allR, sxy, iscR, argR, argP | 6 | 0.19; 0.11; 0.23; 0.10; 0.19; 0.12 | 30, 75, 118, 136, 161, 381 |
| bglX | nac, ypdC, iclR, aaeR, gcvA, cysB | 6 | 0.36; 0.20; 0.21; 0.24; 0.10; 0.13 | 70, 112, 171, 185, 219, 275 |
| bhsA | mraZ, fimZ, cbl, yncC | 4 | 0.18; 0.23; 0.11; 0.14 | 34, 123, 230, 285 |
| bioB-bioF-bioC-bioD | yfeC, yjjQ | 2 | 0.11; 0.12 | 86, 310 |
| bioH | sxy, cysB, deoR, dicC | 4 | 0.43; 0.16; 0.13; 0.10 | 36, 191, 237, 542 |
| bisC | matA, yheO, aaeR, dicA, iscR, uxuR, yjjQ | 7 | 0.49; 0.13; 0.31; 0.19; 0.10; 0.14; 0.15 | 5, 60, 125, 132, 143, 170, 236 |
| blc | yidZ, ydjF, gcvA, gadW, sxy, iclR | 6 | 1.00; 0.11; 0.14; 0.10; 0.13; 0.12 | 1, 46, 137, 166, 268, 428 |
| blr,cnu-ydgK-rsxA-blr | aaeR | 1 | 0.19 | 283 |
| bluF | ycgE, yhfR, zur, dicC, aaeR, yncC, melR, rutR, dicA, matA, ypdC, ybaQ, arsR | 13 | 1.00; 0.17; 0.17; 0.44; 0.47; 0.51; 0.24; 0.14; 0.22; 0.12; 0.12; 0.15; 0.11 | 1, 10, 13, 21, 37, 41, 48, 97, 102, 112, 280, 367, 423 |
| bolA | sfsB, gcvA, hcaR, cynR, treR, ulaR | 6 | 0.81; 0.29; 0.11; 0.19; 0.15; 0.12 | 4, 36, 37, 107, 125, 301 |
| borD | cusR, yfeC, cysB, ulaR, cynR, nac | 6 | 0.16; 0.15; 0.24; 0.25; 0.21; 0.20 | 21, 53, 83, 83, 90, 187 |
| brnQ-proY | mraZ, treR, yagI, yidZ | 4 | 0.11; 0.13; 0.12; 0.21 | 110, 142, 199, 202 |
| bsmA | treR, yciT, ypdC, ybhD, yidZ, fimZ, cbl, nac, cysB, ybaQ | 10 | 0.40; 0.11; 0.32; 0.10; 0.20; 0.14; 0.10; 0.15; 0.11; 0.12 | 6, 43, 45, 52, 204, 237, 255, 266, 317, 470 |
| bssR | aaeR, relE | 2 | 0.87; 0.48 | 6, 11 |
| bssS | nagC, yheO, yhaJ, sfsB, uxuR, cadC, melR, arsR | 8 | 0.24; 0.19; 0.16; 0.36; 0.22; 0.13; 0.12; 0.13 | 12, 25, 32, 64, 67, 77, 184, 344 |
| btuB,btuB-murI | yidZ, trpR, ttk | 3 | 0.79; 0.18; 0.14 | 7, 10, 336 |
| btuC-ihfA,ihfA | arsR, relE, uxuR, sxy, yeiI, aaeR, ybaQ | 7 | 0.57; 0.22; 0.13; 0.10; 0.11; 0.11; 0.11 | 10, 38, 198, 360, 414, 501, 512 |
| btuD | mraZ, ycjW, yheO, relE, yafN | 5 | 0.16; 0.11; 0.11; 0.10; 0.11 | 51, 81, 96, 132, 217 |
| btuD-btuE-btuC,btuE-btuC | arsR, yjjQ, uxuR, sxy, ybaQ | 5 | 0.57; 0.23; 0.13; 0.16; 0.11 | 11, 138, 199, 228, 511 |
| btuR-yciK | cbl, yafN, aaeR | 3 | 0.31; 0.12; 0.19 | 23, 189, 276 |
| cadA | sxy, ulaR, aaeR, ttk, dicC | 5 | 0.58; 0.26; 0.21; 0.13; 0.10 | 13, 77, 227, 365, 518 |
| cadA-cadB | cadC, srlR, cbl, yagI, fimZ, yidZ, ypdC, argP | 8 | 1.00; 0.13; 0.18; 0.17; 0.22; 0.18; 0.12; 0.17 | 1, 28, 99, 111, 128, 244, 259, 266 |
| cadC | cadC, cbl, nrdR, iclR, ulaR, sxy, cynR, dicC, fimZ, deoR, argP, yncC | 12 | 0.31; 0.30; 0.19; 0.34; 0.28; 0.20; 0.13; 0.20; 0.15; 0.11; 0.12; 0.11 | 9, 25, 43, 44, 69, 146, 203, 204, 211, 319, 373, 377 |
| caiC-caiB,caiB | sxy, yeiI, arsR | 3 | 0.29; 0.14; 0.12 | 75, 315, 401 |
| caiE-caiD-caiC | cusR, yidZ, envY, yeiI | 4 | 0.18; 0.30; 0.12; 0.28 | 16, 100, 101, 122 |
| caiE-caiD-caiC-caiB-caiA-caiT | racR, dicA, ttk, mraZ, yafN, aaeR, arsR | 7 | 0.13; 0.29; 0.28; 0.11; 0.14; 0.27; 0.13 | 27, 33, 101, 120, 146, 156, 356 |
| caiF | iscR, ulaR, yjjQ, dgsA, ybaQ, nac | 6 | 0.30; 0.45; 0.32; 0.12; 0.24; 0.18 | 14, 19, 68, 106, 169, 212 |
| can | mraZ, envY, ycjW, matA, yncC, dicA, nrdR, iclR | 8 | 0.27; 0.28; 0.12; 0.14; 0.33; 0.16; 0.10; 0.10 | 8, 14, 74, 75, 85, 196, 201, 504 |
| carA,carA-carB | pepA, argR, yagI, dgsA, rutR, sfsB, ulaR, argP | 8 | 1.00; 0.95; 0.20; 0.12; 0.12; 0.24; 0.10; 0.12 | 1, 3, 72, 112, 120, 130, 370, 376 |
| carB | uxuR, yafN, deoR, argP | 4 | 0.18; 0.16; 0.11; 0.13 | 95, 102, 331, 349 |
| cbdA-cbdB-appA-cbdX | relE, yeiE, arsR | 3 | 0.19; 0.19; 0.27 | 51, 78, 83 |
| cbl | hcaR, cysB, melR, nac | 4 | 0.14; 0.25; 0.18; 0.13 | 28, 72, 87, 318 |
| cbpM-cbpA | arsR, nrdR, yjjQ, ygiT, fimZ, argR, ypdC, iclR, yeiI | 9 | 0.66; 0.36; 0.48; 0.12; 0.20; 0.19; 0.10; 0.15; 0.12 | 5, 5, 24, 26, 150, 159, 328, 333, 363 |
| cbrA | tyrR, ttk | 2 | 0.17; 0.12 | 61, 395 |
| cbrB-cbrC,cbrB | mraZ, argR | 2 | 0.13; 0.26 | 84, 87 |
| cbrC | lldR | 1 | 0.23 | 52 |
| cca | cusR, glnG, dicC, aaeR, uxuR | 5 | 1.00; 0.12; 0.24; 0.21; 0.11 | 1, 97, 119, 236, 260 |
| ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA | yhjC, yhaJ, lldR, aaeR | 4 | 0.11; 0.17; 0.10; 0.13 | 20, 31, 271, 435 |
| cdaR | yeiE, deoR, ybaQ | 3 | 0.24; 0.11; 0.11 | 44, 312, 529 |
| cdd | modE, cysB | 2 | 0.11; 0.19 | 21, 132 |
| cdh | pepA, racR, argP | 3 | 0.12; 0.12; 0.16 | 16, 34, 283 |
| cdsA | dicC, ybaQ | 2 | 0.18; 0.14 | 247, 414 |
| cedA | arsR, yagI, sxy, iclR, ttk | 5 | 0.24; 0.13; 0.17; 0.18; 0.14 | 117, 157, 206, 253, 346 |
| cfa | uvrY, racR, sxy, tyrR, dgsA, envY, treR, ulaR, argR, ttk | 10 | 0.11; 0.13; 0.25; 0.13; 0.12; 0.11; 0.12; 0.17; 0.17; 0.12 | 4, 25, 98, 103, 107, 126, 152, 185, 188, 414 |
| chaA | exuR, yjjQ, yeiE, dicC | 4 | 0.11; 0.22; 0.11; 0.12 | 79, 148, 165, 452 |
| chaB-chaC | exuR, yjjQ, yeiE, dicC | 4 | 0.11; 0.22; 0.11; 0.12 | 78, 148, 166, 453 |
| chaC | yfeC, marA, yjjQ, dicC | 4 | 0.82; 0.11; 0.22; 0.13 | 3, 42, 150, 373 |
| chbG-chbF-chbR-chbA-chbC-chbB,chbC-chbB | ypdC, argP, sxy | 3 | 0.25; 0.12; 0.10 | 67, 367, 367 |
| chbR | yhfR, allR, sfsB, cysB, arsR | 5 | 0.10; 0.12; 0.23; 0.15; 0.11 | 55, 66, 138, 210, 418 |
| cheW-cheA-motB-motA | basR, lldR, yeiI | 3 | 0.10; 0.14; 0.13 | 77, 161, 336 |
| cheZ-cheY-cheB-cheR-tap-tar | uxuR, iclR | 2 | 0.54; 0.16 | 6, 311 |
| chiA | srlR, nrdR, nagC, lldR, iclR, sfsB, dicC | 7 | 0.20; 0.31; 0.10; 0.13; 0.15; 0.11; 0.10 | 9, 10, 74, 193, 343, 383, 527 |
| chiP-chiQ | nagC, glnG, nrdR, yjjQ, lldR, yncC | 6 | 0.26; 0.31; 0.22; 0.35; 0.14; 0.14 | 10, 15, 27, 49, 167, 272 |
| chiQ | ypdC, nsrR, yjjQ | 3 | 0.59; 0.24; 0.13 | 7, 11, 284 |
| chiX | yhfR, sfsB, dgsA, glnG | 4 | 0.10; 0.34; 0.12; 0.11 | 52, 73, 100, 115 |
| cho | arsR, yheO, envY, ttk, ybaQ | 5 | 0.23; 0.10; 0.11; 0.23; 0.10 | 122, 126, 129, 150, 545 |
| chpS-chpB | yddM, sxy, yidZ, arsR, cysB | 5 | 0.27; 0.52; 0.24; 0.15; 0.11 | 5, 23, 142, 266, 331 |
| cirA | iclR, cadC, ttk, yeiI, aaeR | 5 | 0.36; 0.12; 0.12; 0.11; 0.12 | 38, 99, 412, 426, 484 |
| citA-citB | dgsA, yafN, ypdC, cynR | 4 | 0.16; 0.23; 0.25; 0.12 | 37, 48, 66, 243 |
| citB | yncC, ybcM, melR, ybaQ, ttk, argP | 6 | 0.73; 0.11; 0.24; 0.27; 0.18; 0.11 | 17, 24, 49, 119, 220, 404 |
| citG-citX-citF-citE-citD-citC | dgsA, yafN, ypdC, cynR | 4 | 0.16; 0.23; 0.25; 0.12 | 36, 47, 65, 243 |
| citT | mraZ, arsR, ybaQ | 3 | 0.20; 0.18; 0.11 | 23, 208, 508 |
| clcA-erpA,clcA | fimZ, exuR, ulaR, argP | 4 | 0.66; 0.11; 0.18; 0.19 | 13, 70, 173, 227 |
| clcB | mhpR, agaR, cbl, lldR, ulaR, yncC, sxy, ybaQ | 8 | 0.23; 0.15; 0.25; 0.15; 0.13; 0.13; 0.11; 0.14 | 3, 4, 37, 123, 287, 331, 340, 407 |
| clpA | mraZ, cynR, ttk | 3 | 0.14; 0.17; 0.12 | 69, 134, 396 |
| clpB | galS, sxy, matA, fimZ, arsR, dicA, iclR | 7 | 0.16; 0.27; 0.12; 0.21; 0.22; 0.15; 0.16 | 27, 84, 108, 136, 140, 214, 315 |
| clpP-clpX | deoR, yddM, cbl, ttk, yidZ | 5 | 0.23; 0.11; 0.10; 0.12; 0.10 | 67, 69, 252, 398, 489 |
| clpS,clpS-clpA | ypdC, cysB, iclR, nrdR, mraZ, cynR | 6 | 0.49; 0.26; 0.30; 0.17; 0.14; 0.17 | 11, 63, 65, 67, 71, 132 |
| clpX-lon,clpX | arsR, galS, tyrR | 3 | 0.38; 0.14; 0.15 | 36, 40, 76 |
| clsC | yeiE, yidZ, arsR, yncC | 4 | 0.11; 0.22; 0.14; 0.11 | 170, 177, 313, 373 |
| cmk-rpsA,cmk,cmk-rpsA-ihfB | marA, tyrR | 2 | 0.12; 0.11 | 31, 132 |
| cmoA-cmoB | yncC, allR, iclR | 3 | 0.46; 0.10; 0.16 | 50, 101, 296 |
| cmtB-tktA,tktA | uxuR | 1 | 0.12 | 202 |
| cnu | ompR, yegW | 2 | 0.15; 0.10 | 11, 48 |
| coaA | yeiE, deoR, tyrR, dicA, lldR, yidZ | 6 | 0.16; 0.20; 0.11; 0.17; 0.12; 0.13 | 91, 106, 165, 173, 225, 390 |
| cobC-nadD-holA-lptE-leuS,holA-lptE-leuS,lptE-leuS | ttk, argR, ypdC, argP | 4 | 0.30; 0.21; 0.19; 0.12 | 88, 128, 128, 370 |
| codA | treR, yagI, uxuR, aaeR | 4 | 0.18; 0.18; 0.17; 0.12 | 91, 104, 111, 459 |
| codB-codA | ybaQ, hdfR, yncC, ypdC, iclR, yeiI | 6 | 0.71; 0.10; 0.28; 0.13; 0.16; 0.12 | 11, 17, 102, 227, 301, 391 |
| cof | cpxR, relE, yagI, argR, ypdC, yncC, aaeR | 7 | 0.28; 0.18; 0.20; 0.14; 0.12; 0.13; 0.12 | 11, 53, 70, 247, 290, 303, 487 |
| cohE | ompR, cysB, cbl | 3 | 0.10; 0.27; 0.14 | 23, 48, 144 |
| copA | gadW, envY, nagC, yagI, galS, mraZ, yeiI, deoR, iclR | 9 | 0.52; 0.25; 0.16; 0.20; 0.12; 0.12; 0.18; 0.10; 0.10 | 4, 19, 31, 74, 75, 104, 255, 357, 491 |
| corA | sfsB, melR, ttk | 3 | 0.40; 0.17; 0.13 | 50, 102, 375 |
| cpdB | racR, rutR, cysB, sxy | 4 | 0.14; 0.24; 0.20; 0.23 | 22, 25, 118, 119 |
| cptA-sdhE | sxy, marA, yhfR, yidZ, ttk, yncC | 6 | 0.61; 0.11; 0.10; 0.33; 0.16; 0.12 | 9, 45, 48, 83, 276, 358 |
| cpxA-cpxR | cpxR, dicA, tyrR, gcvA, dicC | 5 | 0.46; 0.25; 0.12; 0.14; 0.24 | 4, 69, 123, 124, 125 |
| cpxP | cpxR, dicA, tyrR, dicC, gcvA | 5 | 0.46; 0.20; 0.12; 0.24; 0.14 | 3, 116, 124, 125, 125 |
| cpxQ | dicA, yidZ, dicC, iscR, yncC, cynR, nac, yeiI | 8 | 0.25; 0.29; 0.24; 0.11; 0.19; 0.12; 0.15; 0.10 | 69, 107, 125, 128, 177, 234, 256, 457 |
| creA-creB-creC,creA-creB,creA-creB-creC-creD | rutR, dgsA, fimZ, nac, deoR, aaeR, ttk | 7 | 0.23; 0.14; 0.26; 0.24; 0.15; 0.25; 0.19 | 26, 78, 97, 156, 170, 177, 207 |
| creD | trpR, yhaJ, ybaQ, yeiI, ttk, arsR | 6 | 0.18; 0.18; 0.31; 0.25; 0.15; 0.12 | 12, 26, 91, 138, 300, 402 |
| crfC-yjcZ | yddM, gcvA, iscR, cynR, dicC | 5 | 0.14; 0.14; 0.10; 0.16; 0.17 | 36, 134, 134, 158, 270 |
| croE-ymfL-ymfM-ymfN-ymfR-beeE-jayE-ymfQ-stfP-tfaP | gcvA, ompR | 2 | 0.32; 0.10 | 22, 22 |
| crp,crp-yhfK | aaeR, marA, glnG, iclR | 4 | 0.74; 0.11; 0.15; 0.21 | 16, 37, 63, 173 |
| crpT | yeiI | 1 | 0.31 | 100 |
| crr | melR, dgsA, sfsB, dicC | 4 | 0.44; 0.11; 0.12; 0.14 | 9, 137, 327, 330 |
| csdA-csdE | argR, dicA, dicC | 3 | 0.22; 0.15; 0.10 | 115, 205, 521 |
| csgA | ttk, yeiE, sfsB, argR, deoR, ulaR | 6 | 0.53; 0.22; 0.23; 0.20; 0.13; 0.12 | 15, 54, 135, 151, 247, 323 |
| csgB-csgA-csgC | ttk, sfsB, aaeR, argR, ulaR | 5 | 0.53; 0.31; 0.28; 0.20; 0.12 | 16, 87, 142, 150, 322 |
| csgC | yeiE, yeiI, nrdR | 3 | 0.22; 0.40; 0.11 | 55, 63, 150 |
| csgG-csgF-csgE-csgD,csgF-csgE-csgD | rstA, ompR, basR, aaeR, sfsB, iscR, yheO | 7 | 0.10; 0.23; 0.22; 0.60; 0.31; 0.13; 0.11 | 2, 6, 9, 22, 88, 91, 98 |
| csiD-lhgO-gabD-gabT-gabP | nac, yhfR, ompR, dicA, yeiE, cynR, sfsB | 7 | 0.69; 0.16; 0.10; 0.27; 0.17; 0.11; 0.11 | 12, 12, 31, 47, 84, 290, 373 |
| csiE | cynR, galS, yheO, fimZ, nac, yeiI | 6 | 0.43; 0.18; 0.13; 0.20; 0.24; 0.15 | 8, 21, 74, 141, 152, 298 |
| csiR | yddM, cysB, nac, sxy, aaeR, arsR | 6 | 0.27; 0.18; 0.17; 0.13; 0.15; 0.12 | 6, 145, 228, 295, 359, 396 |
| cspA-insJ-insK,cspA | ycjZ, yagI, sxy, argP, ulaR, ybaQ | 6 | 0.13; 0.13; 0.13; 0.14; 0.11; 0.11 | 17, 170, 293, 320, 352, 520 |
| cspB | iscR, nrdR, cysB, yafN | 4 | 0.18; 0.13; 0.15; 0.10 | 37, 105, 217, 242 |
| cspC-yobF | ygiT, yncC, envY, cynR | 4 | 0.16; 0.66; 0.14; 0.18 | 8, 23, 77, 126 |
| cspD | ypdC, cysB, iclR, nrdR, mraZ, cynR | 6 | 0.49; 0.26; 0.30; 0.17; 0.14; 0.17 | 11, 62, 65, 67, 71, 132 |
| cspE | melR, basR, argP, galS, sfsB | 5 | 0.37; 0.15; 0.32; 0.11; 0.13 | 14, 28, 75, 96, 311 |
| cspF | iscR, nrdR, cysB, yafN | 4 | 0.18; 0.13; 0.15; 0.10 | 37, 105, 217, 241 |
| cspG | ybaQ | 1 | 0.24 | 164 |
| cspH | ybaQ | 1 | 0.24 | 164 |
| cspI | basR, srlR, cpxR, pdhR, ypdC, ulaR, nac, sxy, dicA | 9 | 0.18; 0.11; 0.16; 0.12; 0.21; 0.20; 0.15; 0.11; 0.11 | 20, 37, 50, 69, 98, 142, 262, 338, 346 |
| csrA,argZ-argY-argV-serV-csrA | dicC, ulaR, melR, uxuR, arsR, dicA | 6 | 0.66; 0.22; 0.16; 0.11; 0.15; 0.11 | 3, 111, 125, 234, 259, 325 |
| csrA-alaS,alaS | yddM | 1 | 0.12 | 62 |
| csrC | uvrY, cbl, yddM, cpxR, matA, fimZ, aaeR, cynR, arsR, ypdC | 10 | 1.00; 0.27; 0.12; 0.16; 0.13; 0.26; 0.30; 0.12; 0.14; 0.10 | 2, 31, 51, 58, 83, 103, 133, 254, 302, 337 |
| cstA,cstA-ybdD | ybaQ, ttk | 2 | 0.22; 0.14 | 207, 331 |
| cueO | dgsA, cysB, aaeR | 3 | 0.23; 0.12; 0.11 | 18, 298, 494 |
| cueR | asnC, yafN | 2 | 0.16; 0.13 | 8, 148 |
| curA | arsR, envY, yeiI, relE | 4 | 0.62; 0.23; 0.48; 0.14 | 7, 23, 44, 89 |
| cusC-cusF,cusC-cusF-cusB-cusA | cusR, melR, deoR, fimZ, aaeR | 5 | 0.46; 0.40; 0.19; 0.25; 0.14 | 8, 11, 113, 117, 398 |
| cusS-cusR | cusR, melR, deoR, fimZ, aaeR, ttk | 6 | 0.46; 0.40; 0.19; 0.25; 0.14; 0.10 | 7, 10, 114, 116, 397, 488 |
| cutA,pheU-yjdC-dsbD-cutA | yeiI | 1 | 0.71 | 15 |
| cutA-dcuA-aspA,dcuA-aspA,aspA | yncC, nrdR, gadW, yheO, treR, dicC, argR, iclR | 8 | 0.89; 0.25; 0.15; 0.10; 0.12; 0.21; 0.12; 0.11 | 7, 19, 84, 120, 164, 183, 310, 456 |
| cutC | cusR, iclR, glnG, gcvA, treR | 5 | 0.18; 0.27; 0.12; 0.15; 0.10 | 14, 94, 98, 112, 210 |
| cutC-yecM | cusR, yhjC, argP | 3 | 0.18; 0.10; 0.27 | 14, 30, 123 |
| cvrA | yagI, arsR, melR, sxy | 4 | 0.30; 0.22; 0.14; 0.12 | 33, 141, 152, 312 |
| cvrA-ldcA,ldcA | srlR, yeiE, iclR, aaeR, yeiI | 5 | 0.16; 0.19; 0.27; 0.22; 0.11 | 19, 74, 98, 222, 412 |
| cyaA | treR, ycjW, matA, yidZ, dicC, aaeR | 6 | 1.00; 0.21; 0.20; 0.19; 0.14; 0.14 | 1, 22, 28, 241, 352, 410 |
| cyaR | basR, yidZ, allR, iscR, lldR, ttk | 6 | 0.14; 0.40; 0.10; 0.12; 0.15; 0.24 | 34, 41, 96, 105, 132, 141 |
| cyaY | yeiI, uxuR, cysB, iclR | 4 | 0.22; 0.11; 0.11; 0.13 | 179, 270, 336, 397 |
| cybB,cybB-ydcA-sokB | yciT, fimZ, cpxR, aaeR, lldR, uxuR, ybaQ | 7 | 0.14; 0.39; 0.16; 0.34; 0.13; 0.13; 0.12 | 18, 45, 56, 98, 178, 183, 467 |
| cycA | asnC, dicC, argP, sxy | 4 | 0.10; 0.25; 0.28; 0.13 | 22, 110, 111, 272 |
| cydA-cydB-ybgE-cydX,cydA-cydB,cydA-cydB-ybgE-ybgC-cydX,cydA,cydA-cydB-cydX | ompR, dicA, iscR, yafN, deoR, nrdR, yncC | 7 | 0.16; 0.38; 0.13; 0.17; 0.20; 0.12; 0.11 | 8, 17, 92, 95, 101, 129, 392 |
| cydC-cydD | dgsA, yafN, yidZ | 3 | 0.18; 0.14; 0.18 | 27, 135, 249 |
| cynR | nac, hcaR, uxuR, cynR | 4 | 0.88; 0.38; 0.38; 0.35 | 3, 7, 17, 20 |
| cynT-cynS,cynT-cynS-cynX | nac, hcaR, uxuR, cynR | 4 | 0.88; 0.38; 0.38; 0.35 | 2, 7, 16, 21 |
| cyoD-cyoC-cyoB,cyoB,cyoC-cyoB,cyoE-cyoD-cyoC-cyoB | yeiE, allR, yafN | 3 | 0.38; 0.14; 0.12 | 14, 38, 168 |
| cyoD-cyoC-cyoB-cyoA,cyoE-cyoD-cyoC-cyoB-cyoA | pdhR, exuR, cysB, ycjZ, hcaR, cynR, iclR, sfsB, argP, nac | 10 | 0.59; 0.40; 0.71; 0.11; 0.11; 0.26; 0.24; 0.21; 0.24; 0.15 | 3, 5, 6, 21, 45, 50, 138, 155, 158, 261 |
| cyoE-cyoD-cyoC,cyoD-cyoC | aaeR, yeiI | 2 | 0.42; 0.13 | 56, 346 |
| cysB | ydjF, hcaR, nrdR, deoR, sfsB, yagI, aaeR, yncC, cysB, yeiI | 10 | 0.31; 0.27; 0.20; 0.27; 0.38; 0.17; 0.28; 0.18; 0.12; 0.13 | 5, 13, 35, 37, 60, 120, 145, 194, 292, 339 |
| cysC-cysN-cysD,ftsB-ygbE-cysC-cysN-cysD | cbl, dicC, yjjQ, treR, nrdR, arsR, cysB, fimZ, ypdC | 9 | 0.39; 0.42; 0.38; 0.15; 0.11; 0.18; 0.14; 0.11; 0.10 | 16, 28, 39, 128, 182, 203, 228, 307, 332 |
| cysE | mraZ, lexA, yeiI | 3 | 0.47; 0.13; 0.14 | 2, 16, 320 |
| cysE-gpsA-secB-grxC,grxC | yeiE, matA, galS, treR, arsR, sxy | 6 | 1.00; 0.18; 0.11; 0.10; 0.16; 0.12 | 1, 39, 82, 218, 257, 304 |
| cysE-gpsA-secB-grxC-yibN,gpsA-secB-grxC-yibN,yibN | sfsB, ypdC, ybaQ | 3 | 0.20; 0.13; 0.11 | 160, 231, 542 |
| cysG | ttk, fimZ, ybaQ, aaeR | 4 | 0.61; 0.40; 0.18; 0.17 | 8, 43, 282, 318 |
| cysH | deoR, ypdC, envY | 3 | 0.20; 0.20; 0.11 | 99, 110, 137 |
| cysH-cysI-cysJ | yeiE, gadW, dicC, sfsB, cbl, nac | 6 | 0.30; 0.21; 0.41; 0.35; 0.16; 0.14 | 26, 31, 32, 68, 122, 303 |
| cysI | ttk, yafN | 2 | 0.42; 0.16 | 43, 103 |
| cysK-ptsH-ptsI-crr,cysK-ptsH,cysK | cysB, cbl, fimZ | 3 | 0.26; 0.10; 0.11 | 60, 251, 316 |
| cysM | mraZ, ygiT, treR, yidZ | 4 | 0.22; 0.13; 0.15; 0.12 | 19, 21, 122, 438 |
| cysM-cysA-cysW-cysU-cysP,cysA-cysW-cysU-cysP | cysB, cadC, yagI, tyrR, arsR | 5 | 0.53; 0.26; 0.19; 0.12; 0.12 | 12, 16, 79, 126, 381 |
| cysP-ucpA,ucpA | yjjQ, aaeR | 2 | 0.57; 0.16 | 15, 340 |
| cysQ-ytfI,cysQ | racR, cysB, sxy, aaeR | 4 | 0.14; 0.20; 0.23; 0.12 | 21, 118, 119, 458 |
| cysS | zur, iscR, nac, nrdR, yeiI, aaeR | 6 | 0.23; 0.26; 0.40; 0.17; 0.12; 0.11 | 7, 21, 40, 69, 366, 506 |
| cysT-glyW-pgsA-uvrC-uvrY,uvrC-uvrY | nrdR, ulaR, nac, cysB, argP, aaeR | 6 | 0.21; 0.37; 0.40; 0.19; 0.21; 0.21 | 34, 39, 42, 135, 190, 231 |
| cysZ,cysZ-cysK | yidZ, galS, ttk, fimZ, ypdC, yeiI, arsR, aaeR, ybaQ | 9 | 0.45; 0.14; 0.36; 0.19; 0.11; 0.12; 0.11; 0.11; 0.11 | 29, 43, 60, 160, 314, 371, 408, 504, 539 |
| dacB | treR, exuR, dicA, yncC | 4 | 0.33; 0.12; 0.11; 0.13 | 17, 64, 327, 327 |
| dacC | basR, dicA, yheO, allR, iscR, yfeC, gcvA, yidZ, aaeR | 9 | 0.29; 0.34; 0.16; 0.12; 0.14; 0.11; 0.16; 0.17; 0.14 | 4, 19, 40, 59, 78, 91, 103, 266, 405 |
| dacD,sbmC-dacD | envY, deoR, gadW, gcvA, argP, ulaR, dicC | 7 | 0.16; 0.20; 0.11; 0.11; 0.17; 0.12; 0.12 | 67, 103, 154, 215, 254, 299, 443 |
| dadA-dadX | srlR, rutR, yidZ, ypdC, ttk, ybaQ | 6 | 0.10; 0.12; 0.22; 0.15; 0.16; 0.15 | 43, 116, 172, 174, 281, 357 |
| dapB | deoR, cbl, ybaQ | 3 | 0.19; 0.13; 0.16 | 116, 173, 331 |
| dapD,yaeI-dapD,yaeH-yaeI-dapD | allR, deoR, ttk, yagI | 4 | 0.14; 0.16; 0.19; 0.11 | 34, 159, 212, 214 |
| dapD-glnD,glnD | nac, dgsA, argP, aaeR, rutR, cynR, ulaR | 7 | 0.55; 0.17; 0.31; 0.36; 0.14; 0.14; 0.15 | 24, 31, 80, 88, 89, 180, 237 |
| dapD-glnD-map,glnD-map,map | yncC, iscR, melR, cpxR, nrdR, deoR, yeiI | 7 | 0.43; 0.12; 0.16; 0.12; 0.11; 0.13; 0.17 | 59, 113, 120, 124, 161, 250, 260 |
| dapE-ypfN | matA, ybaQ | 2 | 0.41; 0.11 | 7, 499 |
| dapF-yigA-xerC-yigB-yifL,dapF-yigA-xerC-yifL | yeiI, cysB | 2 | 0.22; 0.11 | 180, 335 |
| dauA | ycjZ, exuR, dicC, yeiE, ttk | 5 | 0.10; 0.11; 0.24; 0.11; 0.18 | 34, 92, 118, 159, 231 |
| dauA-prsA,prsA | yeiI, yafN, yheO, mraZ, treR, fimZ, deoR | 7 | 0.36; 0.17; 0.12; 0.11; 0.10; 0.14; 0.12 | 76, 89, 91, 122, 223, 231, 294 |
| dauA-prsA-ispE-lolB,prsA-ispE-lolB | relE, cynR, gcvA, nac | 4 | 0.11; 0.16; 0.12; 0.17 | 117, 144, 165, 219 |
| dbpA | dicC | 1 | 0.12 | 427 |
| dcp | yidZ, cysB, sfsB, iclR | 4 | 0.41; 0.24; 0.11; 0.13 | 37, 76, 356, 414 |
| dcrB | uxuR, fimZ | 2 | 0.30; 0.19 | 29, 162 |
| dctA | iscR, yidZ, yheO, sxy, iclR | 5 | 0.33; 0.39; 0.12; 0.20; 0.21 | 13, 52, 92, 147, 184 |
| dcuC | tyrR, racR, nrdR, srlR, nsrR, glnG, mraZ, yheO, cbl, ulaR, yncC, aaeR | 12 | 0.27; 0.16; 0.20; 0.10; 0.12; 0.13; 0.13; 0.12; 0.11; 0.15; 0.13; 0.12 | 19, 20, 37, 45, 80, 87, 88, 93, 222, 231, 307, 490 |
| dcuD | tyrR, ycjZ, nrdR, dicA, argR, cynR, iclR, aaeR | 8 | 0.30; 0.10; 0.13; 0.18; 0.19; 0.11; 0.14; 0.10 | 11, 41, 121, 149, 157, 266, 376, 541 |
| dcuR | ypdC, deoR, fimZ | 3 | 0.29; 0.21; 0.17 | 52, 87, 175 |
| dcuR-dcuS | lldR, argP, arsR | 3 | 0.12; 0.16; 0.13 | 217, 289, 332 |
| ddlA | nrdR, allR, argP, nac, yncC, cynR, yjjQ, dicA, cysB, iclR | 10 | 0.27; 0.12; 0.29; 0.27; 0.21; 0.15; 0.12; 0.11; 0.11; 0.12 | 18, 65, 97, 122, 150, 167, 302, 322, 340, 432 |
| ddpF-ddpD-ddpC-ddpB-ddpA-ddpX | glnG, cbl, argP, sfsB | 4 | 0.33; 0.14; 0.20; 0.12 | 14, 157, 204, 345 |
| deaD-yrbN,yrbN | cadC, dicA, dicC, cbl, yidZ | 5 | 0.10; 0.17; 0.20; 0.11; 0.13 | 125, 174, 215, 216, 370 |
| dedA-truA-usg | racR, cynR | 2 | 0.10; 0.13 | 48, 222 |
| dedA-truA-usg-pdxB,truA-usg-pdxB,pdxB | sxy, yidZ, cysB, uxuR, nac, ttk, aaeR | 7 | 1.00; 0.74; 0.30; 0.12; 0.16; 0.13; 0.11 | 2, 8, 42, 201, 236, 358, 522 |
| dedD-folC | ybaQ, ypdC, sxy | 3 | 0.34; 0.11; 0.11 | 72, 311, 343 |
| def-fmt-rsmB,def-fmt,def-fmt-rsmB-trkA | argR, sxy, fimZ | 3 | 0.70; 0.57; 0.43 | 15, 17, 32 |
| degP | nsrR, nagC, aaeR, dicC, dicA | 5 | 0.13; 0.11; 0.23; 0.20; 0.12 | 54, 64, 203, 206, 311 |
| degQ,degQ-degS | trpR, iclR, lldR, deoR, yidZ, argP | 6 | 0.12; 0.19; 0.10; 0.10; 0.12; 0.10 | 27, 229, 265, 355, 419, 429 |
| degS | yeiE, nac, argP, yncC | 4 | 0.25; 0.22; 0.16; 0.10 | 39, 169, 278, 406 |
| deoA-deoB-deoD | mraZ, melR, cysB | 3 | 0.12; 0.14; 0.15 | 103, 149, 202 |
| deoB-deoD | uxuR, iclR | 2 | 0.25; 0.14 | 53, 378 |
| deoC-deoA,deoC-deoA-deoB,deoC-deoA-deoB-deoD | deoR, sfsB, yagI, ybaQ | 4 | 0.39; 0.30; 0.11; 0.11 | 8, 95, 226, 518 |
| deoD | cbl, lldR, cynR, yagI, yeiI, cysB, arsR | 7 | 0.32; 0.14; 0.16; 0.11; 0.19; 0.14; 0.10 | 22, 149, 152, 220, 231, 251, 448 |
| deoR | ompR, yncC | 2 | 0.10; 0.26 | 30, 117 |
| deoR-ybjG,ybjG | kdgR, yjjQ, matA, dicA, sfsB, iclR | 6 | 0.14; 0.34; 0.12; 0.16; 0.17; 0.14 | 21, 60, 92, 186, 210, 389 |
| der-bamB | nsrR, lldR, deoR, dicA | 4 | 0.13; 0.17; 0.18; 0.11 | 66, 94, 133, 337 |
| dfp,dfp-dut-ttk | sxy, ypdC, argP | 3 | 0.33; 0.22; 0.11 | 67, 85, 411 |
| dgcZ | nac, pepA, argP, cpxR, galS, dicC | 6 | 1.00; 0.10; 0.47; 0.15; 0.10; 0.13 | 1, 26, 31, 61, 106, 409 |
| dgkA,dgkA-lexA | yhjC, argR, dicA, tyrR | 4 | 0.13; 0.27; 0.23; 0.13 | 15, 82, 94, 94 |
| dgoT-dgoK-dgoA-dgoD-dgoR,dgoK-dgoA-dgoD-dgoR | dgoR, ycjZ, ygiT, yjjQ | 4 | 1.00; 0.10; 0.10; 0.20 | 1, 40, 44, 171 |
| dgsA,ynfK-dgsA | dgsA, ebgR, tyrR, melR, sxy | 5 | 0.30; 0.10; 0.11; 0.10; 0.11 | 11, 14, 136, 235, 336 |
| dgt | dicA | 1 | 0.12 | 280 |
| dhaM | melR, ycjW, treR, nac, deoR, yeiI | 6 | 0.36; 0.10; 0.12; 0.17; 0.11; 0.11 | 15, 99, 178, 222, 321, 407 |
| dhaM-dhaL-dhaK | ycjW, purR, betI, yjiR, ybiH, gadW, ybaQ, uxuR, yncC, argR | 10 | 0.41; 0.11; 0.12; 0.12; 0.11; 0.17; 0.30; 0.16; 0.18; 0.12 | 5, 16, 17, 19, 43, 58, 98, 128, 198, 312 |
| dhaR | ycjW, purR, betI, yjiR, ybiH, gadW, uxuR, ybaQ, argR | 9 | 0.41; 0.11; 0.12; 0.12; 0.11; 0.17; 0.16; 0.18; 0.12 | 4, 16, 17, 19, 42, 59, 127, 276, 313 |
| diaA-yraP,diaA | basR, cynR | 2 | 0.11; 0.12 | 60, 239 |
| dicA | dicC, dicA, uxuR, tyrR, ybaQ, deoR, ttk | 7 | 1.00; 1.00; 0.19; 0.13; 0.17; 0.10; 0.11 | 1, 2, 89, 105, 317, 349, 450 |
| dicB-ydfD-ydfE-insD-7-intQ | ygiT, racR, matA, gadW, cysB, yafN, aaeR | 7 | 0.11; 0.11; 0.17; 0.11; 0.17; 0.13; 0.10 | 35, 43, 49, 137, 161, 162, 544 |
| dicF | ygiT, ybaQ, dicC | 3 | 0.11; 0.25; 0.22 | 36, 160, 176 |
| dinB-yafN,dinB-yafN-yafO-yafP | marA, uxuR, ttk | 3 | 0.11; 0.22; 0.10 | 43, 72, 490 |
| dinD | lexA, yjiR, sxy, yidZ, ulaR, sfsB, argR | 7 | 0.23; 0.16; 0.38; 0.22; 0.12; 0.13; 0.12 | 5, 8, 49, 179, 294, 307, 322 |
| dinG | argR, sxy, nrdR, yjiR, gcvA, cysB, yagI, tyrR, mraZ, yidZ | 10 | 0.74; 0.54; 0.24; 0.12; 0.22; 0.20; 0.16; 0.11; 0.10; 0.12 | 12, 20, 21, 22, 56, 120, 124, 130, 134, 431 |
| dinI | lexA, yddM, nac, tyrR, fimZ, melR | 6 | 0.16; 0.11; 0.30; 0.10; 0.17; 0.12 | 11, 63, 94, 169, 183, 183 |
| dinI-pyrC,pyrC | yeiI, yhaJ, pdhR, dicC, envY | 5 | 0.74; 0.15; 0.10; 0.28; 0.12 | 13, 38, 83, 87, 95 |
| dinQ | relE, lexA, racR, ttk, yncC, deoR | 6 | 0.31; 0.11; 0.13; 0.25; 0.15; 0.10 | 21, 28, 31, 132, 259, 347 |
| djlA,djlA-yabP-yabQ | yddM, yncC, sxy, argP, ybaQ | 5 | 0.26; 0.17; 0.14; 0.17; 0.11 | 7, 200, 261, 267, 534 |
| dkgA | yhaJ, cadC, ybaQ | 3 | 0.33; 0.18; 0.18 | 9, 37, 284 |
| dkgB | cbl, lldR, yeiI | 3 | 0.24; 0.14; 0.14 | 42, 152, 319 |
| dksA,pcnB-gluQ-dksA,gluQ-dksA | treR, dicA, fimZ | 3 | 0.29; 0.12; 0.11 | 25, 284, 309 |
| dksA-sfsA-ligT,ligT | yegW, relE, ybaQ | 3 | 0.13; 0.13; 0.30 | 11, 92, 95 |
| dld | nac, ypdC, iclR, aaeR, cysB, gcvA | 6 | 0.36; 0.20; 0.21; 0.24; 0.16; 0.10 | 70, 111, 171, 186, 192, 219 |
| dmlA | yeaT | 1 | 1.00 | 1 |
| dmsA-dmsB-dmsC,dmsA-dmsB | yciT, exuR, yncC, envY, cadC, rutR, argR, ulaR | 8 | 0.31; 0.24; 0.70; 0.18; 0.13; 0.12; 0.11; 0.10 | 4, 17, 18, 47, 76, 129, 347, 367 |
| dmsC | cysB, cadC, lldR, yidZ | 4 | 0.51; 0.14; 0.20; 0.14 | 13, 65, 65, 338 |
| dmsD | trpR, yidZ | 2 | 0.13; 0.12 | 21, 420 |
| dnaB-alr,dnaB | yncC | 1 | 0.67 | 21 |
| dnaJ-insL-1 | arsR, uxuR, dicA, yeiI, dicC | 5 | 0.20; 0.10; 0.10; 0.12; 0.13 | 155, 287, 358, 390, 397 |
| dnaK-dnaJ-insL-1,dnaK-dnaJ,dnaK | nrdR, yheO, yncC, yjjQ, iclR, ybaQ | 6 | 0.21; 0.13; 0.14; 0.13; 0.12; 0.10 | 30, 66, 283, 290, 433, 553 |
| dnaQ-aspV,dnaQ | glnG, yeiI, iclR | 3 | 0.11; 0.13; 0.11 | 103, 348, 469 |
| dnaX-ybaB-recR,dnaX | uxuR, marA, cpxR | 3 | 0.33; 0.10; 0.14 | 22, 48, 81 |
| dosC-yddW,yddW | yidZ, ypdC | 2 | 0.36; 0.15 | 66, 193 |
| dosP-dosC,dosC | agaR, melR, argP, ybaQ | 4 | 0.10; 0.13; 0.21; 0.12 | 12, 162, 184, 457 |
| dppF-dppD-dppC-dppB-dppA,dppA,dppC-dppB-dppA | cysB, dicA, glnG, sxy | 4 | 0.34; 0.26; 0.14; 0.26 | 33, 59, 74, 88 |
| dps | yqjI, cysB, argR, cbl, ulaR, argP, yjjQ, dicC, yidZ | 9 | 0.11; 0.36; 0.18; 0.12; 0.16; 0.15; 0.11; 0.14; 0.13 | 3, 27, 185, 195, 208, 318, 348, 362, 393 |
| dsbA | cbl, yheO, ypdC, cynR, uxuR | 5 | 0.64; 0.15; 0.30; 0.17; 0.14 | 3, 47, 51, 137, 165 |
| dsbB | lldR, nac, argP | 3 | 0.46; 0.18; 0.14 | 6, 206, 329 |
| dsbB-nhaB,nhaB | ydjF, uxuR, matA, ypdC | 4 | 0.12; 0.23; 0.11; 0.14 | 34, 62, 127, 206 |
| dsbD-cutA-dcuA,cutA-dcuA,dcuA | torR, pdhR, dicA, ulaR | 4 | 0.12; 0.13; 0.15; 0.14 | 3, 55, 206, 248 |
| dsbG | yeiE, hcaR, cpxR, ttk, aaeR, dicA | 6 | 0.62; 0.28; 0.18; 0.36; 0.33; 0.12 | 4, 10, 41, 63, 108, 293 |
| dsdA | yeiI, basR, arsR, argR, dicC | 5 | 0.52; 0.12; 0.25; 0.20; 0.19 | 32, 45, 99, 148, 230 |
| dsdC | dicA, ulaR, yeiI, lldR | 4 | 0.24; 0.23; 0.19; 0.10 | 81, 94, 217, 287 |
| dsdX-dsdA | dicA, ulaR, yeiI, lldR | 4 | 0.24; 0.23; 0.19; 0.10 | 80, 95, 217, 286 |
| dsrA | dgsA, ulaR, ycjW, treR, argP, fimZ, sxy | 7 | 0.24; 0.26; 0.11; 0.19; 0.26; 0.16; 0.12 | 16, 78, 79, 80, 130, 198, 313 |
| dsrB | dicC, fimZ | 2 | 0.21; 0.16 | 190, 200 |
| dtd-yiiD | ttk, sfsB, mraZ, ulaR, arsR, ybaQ | 6 | 0.37; 0.32; 0.11; 0.12; 0.11; 0.12 | 59, 85, 126, 330, 433, 474 |
| dtpA | trpR, ompR, ypdC, matA, gadW, lldR, envY, arsR | 8 | 0.22; 0.19; 0.26; 0.13; 0.14; 0.15; 0.11; 0.12 | 5, 7, 58, 82, 93, 121, 125, 377 |
| dtpB | cbl, yeiI, cpxR, argR, lldR | 5 | 0.22; 0.37; 0.13; 0.16; 0.12 | 57, 72, 92, 205, 221 |
| dtpC | nac, ybaQ, nrdR, cysB, yjjQ, melR, fimZ, dicC, ttk | 9 | 0.44; 0.35; 0.16; 0.20; 0.22; 0.14; 0.16; 0.17; 0.11 | 33, 67, 76, 112, 145, 151, 191, 275, 467 |
| dtpD | ydfH, yeaT, argR, melR, yheO, gcvA, ybaQ | 7 | 0.14; 0.11; 0.47; 0.22; 0.10; 0.12; 0.10 | 5, 9, 29, 58, 130, 163, 548 |
| dusA-pspG,dusA | aaeR, matA, yncC, dicC, ttk, cysB, nac | 7 | 0.51; 0.17; 0.40; 0.22; 0.18; 0.13; 0.10 | 28, 48, 66, 167, 230, 274, 405 |
| dusB-fis | yciT, yhaJ, yjjQ, gcvA, sxy, glnG, ybaQ | 7 | 0.10; 0.12; 0.32; 0.16; 0.23; 0.10; 0.19 | 55, 61, 73, 105, 125, 144, 263 |
| dusC | yeiE, yjiR, arsR, ypdC | 4 | 0.35; 0.12; 0.20; 0.16 | 17, 24, 171, 172 |
| dut-ttk | allR, yhaJ, yagI, ulaR | 4 | 0.16; 0.16; 0.28; 0.23 | 27, 34, 40, 98 |
| dxr-ispU-cdsA | yhaJ, uxuR | 2 | 0.15; 0.17 | 40, 118 |
| eaeH-insE-1-insF-1-insEF1 | racR, modE, yncC, ttk, nrdR, iscR, tyrR, aaeR, dicC, argP, yagI, arsR | 12 | 0.16; 0.10; 0.63; 0.42; 0.18; 0.11; 0.11; 0.27; 0.21; 0.19; 0.10; 0.14 | 19, 25, 26, 44, 57, 131, 133, 158, 195, 216, 236, 298 |
| eamA | cysB | 1 | 0.55 | 9 |
| eamB | pepA, yagI, cadC, ypdC, ttk, aaeR | 6 | 0.19; 0.32; 0.18; 0.15; 0.16; 0.14 | 3, 22, 31, 181, 271, 408 |
| ebgA-ebgC | ebgR, trpR, lldR, yeiE, matA, argR, fimZ, iclR | 8 | 1.00; 0.12; 0.21; 0.16; 0.13; 0.17; 0.12; 0.10 | 1, 24, 58, 86, 87, 189, 265, 487 |
| ebgR | ebgR, ycgE, yheO, yafN, ttk | 5 | 0.47; 0.12; 0.17; 0.16; 0.25 | 2, 8, 33, 105, 135 |
| ecnA-ecnB | hdfR, ybaQ, dgsA, uxuR, nac | 5 | 0.50; 0.42; 0.11; 0.13; 0.17 | 3, 44, 140, 180, 226 |
| ecnB | hdfR, pepA, dgsA, nac | 4 | 0.50; 0.10; 0.11; 0.17 | 2, 27, 142, 225 |
| eco | ypdC, ybhD, dgsA, mraZ, cpxR, cynR, ttk, cbl, nac, argP | 10 | 0.38; 0.11; 0.14; 0.14; 0.12; 0.17; 0.24; 0.14; 0.16; 0.11 | 28, 38, 75, 79, 119, 139, 143, 162, 243, 422 |
| ecpA | yncC, arsR, gcvA, aaeR | 4 | 0.20; 0.20; 0.10; 0.19 | 167, 168, 232, 285 |
| ecpE-ecpD-ecpC-ecpB | cysB, cpxR, lldR, yncC | 4 | 0.83; 0.18; 0.20; 0.36 | 2, 43, 66, 80 |
| eda | yhaJ, sxy, tyrR | 3 | 0.19; 0.41; 0.18 | 23, 40, 52 |
| eda-edd | ycjZ, dgsA, yjjQ | 3 | 0.17; 0.14; 0.10 | 6, 70, 355 |
| efeO-efeB | dgsA, yagI | 2 | 0.32; 0.16 | 9, 128 |
| efeU,efeO-efeB-efeU | nagC | 1 | 0.10 | 71 |
| efp,efp-ecnA-ecnB | cbl, cysB, deoR | 3 | 0.35; 0.23; 0.14 | 19, 86, 225 |
| elaB | lldR, cysB, argP | 3 | 0.33; 0.27; 0.11 | 16, 55, 402 |
| elaD | dicC, ulaR, ypdC, ttk, nac | 5 | 0.38; 0.22; 0.18; 0.17; 0.12 | 40, 112, 141, 249, 349 |
| elfA | cysB, betI, ybiH, asnC, ycjZ, cynR, nac, lldR, sfsB, cbl, arsR, argP, aaeR | 13 | 0.66; 0.14; 0.14; 0.10; 0.11; 0.23; 0.31; 0.16; 0.17; 0.11; 0.13; 0.10; 0.13 | 7, 12, 21, 23, 25, 60, 87, 110, 214, 218, 351, 437, 443 |
| elfD-elfC-elfG-ycbU-ycbV-ycbF | sfsB, yeiE, ybiH, deoR, cynR, ypdC, ulaR, argP, yjjQ, arsR | 10 | 0.61; 0.28; 0.13; 0.26; 0.20; 0.15; 0.16; 0.16; 0.12; 0.12 | 13, 31, 32, 44, 106, 186, 219, 276, 317, 400 |
| elyC | ydjF, cbl, ttk, cynR, iclR | 5 | 0.10; 0.14; 0.19; 0.11; 0.11 | 55, 159, 199, 261, 475 |
| emrD | fimZ, cadC, nrdR, tyrR, ycjW, dicA, ttk | 7 | 0.72; 0.25; 0.22; 0.19; 0.11; 0.14; 0.14 | 6, 20, 28, 43, 94, 247, 326 |
| emrE | yfeC, yafN, dicC | 3 | 0.12; 0.14; 0.11 | 80, 136, 506 |
| emrY-emrK | pepA, yhaJ, rutR, yidZ, yeiE, nrdR, arsR, ulaR | 8 | 0.14; 0.30; 0.16; 0.34; 0.16; 0.10; 0.15; 0.13 | 8, 11, 60, 78, 88, 205, 258, 268 |
| emtA | yidZ, melR, yeiI, iclR | 4 | 0.35; 0.13; 0.11; 0.11 | 75, 169, 411, 459 |
| endA,endA-rsmE-gshB-yqgE-yqgF | mraZ, sxy, yagI, cbl, yidZ | 5 | 0.20; 0.20; 0.11; 0.10; 0.17 | 25, 154, 224, 247, 278 |
| eno | uxuR, yeiE, galS, melR, yjjQ | 5 | 0.41; 0.21; 0.12; 0.16; 0.16 | 12, 61, 70, 124, 218 |
| eno-pyrG | dicC, ypdC | 2 | 0.29; 0.12 | 79, 258 |
| entC-entE-entB-entA,entC-entE-entB-entA-entH,entC-entE-entB | cpxR, argP | 2 | 0.16; 0.20 | 53, 202 |
| entD-fepA,fepA | yfeC, ybaQ, iscR, ttk, lldR, cynR, nac | 7 | 0.16; 0.26; 0.10; 0.23; 0.11; 0.10; 0.12 | 42, 133, 146, 152, 241, 293, 361 |
| entH | mraZ, yidZ, ybaQ | 3 | 0.10; 0.19; 0.14 | 136, 224, 421 |
| entS | argR, dicC, ttk, iclR | 4 | 0.50; 0.28; 0.28; 0.16 | 26, 83, 98, 302 |
| envC-yibQ | dicC, sxy, ulaR | 3 | 0.32; 0.22; 0.12 | 61, 132, 307 |
| envR | srlR, argP, yncC, argR, nac, ulaR, sfsB | 7 | 0.18; 0.38; 0.27; 0.21; 0.14; 0.13; 0.11 | 12, 48, 108, 124, 283, 283, 363 |
| envZ-ompR,ompR | ygiT, yheO, dicC, yeiI, uxuR | 5 | 0.13; 0.14; 0.22; 0.18; 0.11 | 20, 49, 156, 234, 263 |
| epmA-yjeM-yjeN,epmA-yjeM,epmA | yeiI, yafN | 2 | 0.42; 0.16 | 57, 112 |
| epmB | cbl, ybaQ, cysB, uxuR, deoR | 5 | 0.35; 0.42; 0.23; 0.13; 0.14 | 20, 45, 87, 181, 226 |
| eptA,basS-basR-eptA | basR, cynR, yeiI | 3 | 1.00; 0.14; 0.20 | 1, 197, 206 |
| eptB | yheO, sfsB, gcvA, iclR, yidZ | 5 | 0.19; 0.40; 0.17; 0.20; 0.17 | 26, 47, 96, 212, 269 |
| eptC | basR, envY, argR, yjjQ, argP, yncC, ybaQ | 7 | 0.20; 0.15; 0.20; 0.13; 0.16; 0.13; 0.14 | 14, 72, 147, 283, 288, 322, 396 |
| erpA | yidZ, yeiE, yagI, sxy | 4 | 0.54; 0.19; 0.15; 0.10 | 16, 72, 139, 363 |
| esrE | lldR, yeiI, ybaQ | 3 | 0.11; 0.15; 0.11 | 245, 288, 532 |
| essD-rrrD-rzpD | tyrR, iclR, yagI, ttk, argR, dicA, argP | 7 | 0.13; 0.26; 0.12; 0.17; 0.13; 0.12; 0.10 | 100, 114, 187, 239, 285, 288, 431 |
| etk-etp-gfcE | deoR, iclR, yafN | 3 | 0.24; 0.23; 0.13 | 54, 142, 151 |
| ettA | yeiI, yafN, dgsA, relE, tyrR, cysB, yagI, dicC | 8 | 0.71; 0.29; 0.15; 0.16; 0.14; 0.23; 0.11; 0.12 | 18, 26, 46, 66, 83, 90, 225, 428 |
| eutA-eutH | yafN, yeiI, dicA, rutR, dicC | 5 | 0.63; 0.41; 0.23; 0.11; 0.18 | 2, 59, 86, 143, 242 |
| eutG-eutJ-eutE-eutN | mraZ | 1 | 0.17 | 43 |
| eutM-eutD-eutT-eutQ-eutP-eutS | dgsA, cynR, nrdR, yncC, yagI, nac, argP, argR, dicC | 9 | 0.48; 0.31; 0.15; 0.27; 0.15; 0.23; 0.24; 0.19; 0.14 | 3, 35, 89, 110, 133, 159, 161, 166, 346 |
| eutP-eutS-maeB,maeB | lldR, envY, argP, sfsB, ttk | 5 | 0.26; 0.10; 0.16; 0.10; 0.12 | 35, 139, 287, 404, 426 |
| eutR-eutK-eutL-eutC-eutB,eutK-eutL-eutC-eutB | yidZ, cbl, yagI | 3 | 0.63; 0.15; 0.10 | 13, 143, 246 |
| evgA-evgS,evgA | pepA, yhaJ, rutR, nrdR, ulaR, nac, arsR | 7 | 0.14; 0.30; 0.16; 0.10; 0.13; 0.13; 0.12 | 7, 11, 60, 206, 268, 332, 394 |
| evgL | pepA, yhaJ, rutR, nrdR, ulaR, nac, arsR | 7 | 0.14; 0.30; 0.16; 0.10; 0.13; 0.13; 0.12 | 9, 11, 60, 206, 267, 332, 395 |
| exbD | cbl, ycjW | 2 | 0.19; 0.10 | 91, 98 |
| exbD-exbB | yfeC, cysB | 2 | 0.12; 0.11 | 74, 346 |
| exoD | yeaM, deoR, sfsB, dicC | 4 | 0.17; 0.16; 0.16; 0.12 | 3, 154, 244, 419 |
| exoX | galS, yidZ, dicC | 3 | 0.20; 0.22; 0.10 | 12, 174, 529 |
| exuR | exuR, dicA, sfsB, yidZ, basR, ybaQ, uxuR, arsR | 8 | 0.43; 0.46; 0.47; 0.41; 0.12; 0.31; 0.11; 0.12 | 4, 11, 29, 36, 43, 86, 239, 404 |
| exuT | exuR, ybcM, dgsA, yheO, ypdC, sxy | 6 | 1.00; 0.12; 0.16; 0.15; 0.27; 0.14 | 1, 14, 38, 45, 55, 265 |
| fabA | fabR, yjiR, rutR, deoR, melR, ybaQ, gcvA, yeiI | 8 | 0.16; 0.13; 0.17; 0.23; 0.14; 0.22; 0.10; 0.10 | 8, 18, 51, 62, 156, 213, 221, 461 |
| fabA-ycbZ,ycbZ | yhjC, sxy, yheO, dicA, gcvA, argP | 6 | 0.10; 0.34; 0.12; 0.22; 0.10; 0.12 | 31, 63, 82, 100, 225, 390 |
| fabD-fabG-acpP | yegW, relE, ulaR, argR, cbl, iclR | 6 | 0.12; 0.29; 0.38; 0.30; 0.21; 0.12 | 16, 25, 35, 70, 70, 451 |
| fabF | allR, yheO, uxuR, cadC, cynR | 5 | 0.17; 0.25; 0.21; 0.12; 0.17 | 16, 16, 74, 95, 140 |
| fabG-acpP | ybaQ, argR, sfsB | 3 | 0.82; 0.18; 0.12 | 8, 169, 318 |
| fabH-fabD-fabG,fabH-fabD-fabG-acpP | trpR, allR, iclR, dicC | 4 | 0.11; 0.13; 0.18; 0.11 | 29, 49, 252, 471 |
| fabI,yciW-fabI | melR, deoR, iclR, cysB, yeiI | 5 | 0.39; 0.22; 0.20; 0.15; 0.18 | 12, 78, 202, 207, 259 |
| fabR-yijD | ydjF, yhaJ, glnG, uxuR, lldR, yncC | 6 | 0.11; 0.10; 0.12; 0.13; 0.13; 0.14 | 53, 79, 95, 187, 196, 277 |
| fabZ-lpxA-lpxB,fabZ-lpxA-lpxB-rnhB,fabZ-lpxA,fabZ | argP, dgsA, yeiI, dicA, sxy, yidZ | 6 | 0.34; 0.11; 0.23; 0.15; 0.12; 0.14 | 63, 126, 162, 210, 323, 355 |
| fadA-fadB | tyrR, dicC | 2 | 0.13; 0.11 | 102, 479 |
| fadD | exuR, ydjF, iscR, sxy, ypdC | 5 | 0.21; 0.11; 0.13; 0.20; 0.10 | 24, 51, 99, 152, 343 |
| fadD-yeaY-tsaB,yeaY-tsaB | yidZ, fimZ | 2 | 0.21; 0.16 | 185, 192 |
| fadE | kdgR, pdhR, arsR, cpxR, ybaQ | 5 | 0.17; 0.20; 0.28; 0.13; 0.25 | 10, 20, 75, 85, 151 |
| fadH | sxy, ypdC | 2 | 0.15; 0.11 | 253, 300 |
| fadJ-fadI | asnC, pdhR, ycjW, lldR, exuR, relE, uxuR | 7 | 0.12; 0.21; 0.18; 0.19; 0.11; 0.11; 0.11 | 14, 18, 32, 70, 75, 120, 230 |
| fadL | nagC, nsrR, exuR, arsR, argR | 5 | 0.14; 0.12; 0.11; 0.23; 0.14 | 35, 70, 82, 126, 266 |
| fadM | pdhR, exuR, relE, yeiI, cysB, lldR, ttk | 7 | 0.16; 0.13; 0.16; 0.39; 0.19; 0.10; 0.11 | 31, 59, 67, 67, 140, 264, 443 |
| fadR | uxuR | 1 | 0.22 | 63 |
| fbaB | yegW, allR, nagC, sfsB | 4 | 1.00; 0.13; 0.10; 0.12 | 1, 41, 72, 326 |
| fbp | ycjW, sfsB, ypdC, yjjQ, argR | 5 | 0.13; 0.35; 0.23; 0.30; 0.12 | 61, 71, 76, 82, 325 |
| fdhD | uxuR, marA, deoR, envY, treR, ypdC | 6 | 0.29; 0.11; 0.22; 0.13; 0.12; 0.12 | 31, 36, 75, 82, 172, 282 |
| fdhE | nsrR, melR, argR, dgsA, argP, yidZ | 6 | 0.12; 0.15; 0.20; 0.10; 0.20; 0.13 | 77, 144, 146, 146, 196, 366 |
| fdhE-fdoI-fdoH-fdoG,fdoH-fdoG | deoR, envY, treR, ypdC | 4 | 0.22; 0.13; 0.12; 0.12 | 75, 82, 173, 283 |
| fdhF | melR, iclR, sfsB, ttk | 4 | 0.24; 0.15; 0.11; 0.12 | 50, 334, 371, 425 |
| fdnG-fdnH-fdnI,fdnG | ttk, ulaR, yjjQ | 3 | 0.28; 0.12; 0.11 | 104, 325, 335 |
| fdoH | cusR, treR, nrdR, dicC, yagI, deoR | 6 | 0.11; 0.17; 0.11; 0.20; 0.11; 0.12 | 60, 99, 169, 211, 219, 278 |
| fdrA-ylbF-ybcF-ylbE | fimZ, matA, cynR, cysB, aaeR | 5 | 1.00; 0.17; 0.22; 0.12; 0.11 | 1, 51, 79, 302, 519 |
| feaB | nsrR, hcaR, nac, iscR, argP, aaeR, cysB, arsR, argR, iclR, yeiI | 11 | 0.26; 0.28; 0.65; 0.13; 0.21; 0.23; 0.13; 0.14; 0.12; 0.16; 0.11 | 9, 11, 14, 94, 182, 210, 281, 295, 307, 307, 430 |
| feaR | nsrR, hcaR, nac, iscR, argP, cysB, arsR, argR, iclR, yeiI | 10 | 0.26; 0.28; 0.65; 0.13; 0.21; 0.13; 0.14; 0.12; 0.16; 0.11 | 9, 12, 13, 94, 183, 281, 294, 306, 307, 431 |
| fecA-fecR-fecI,fecR-fecI | iclR, fimZ, cynR, dicA, ulaR, arsR | 6 | 0.64; 0.35; 0.22; 0.18; 0.17; 0.12 | 7, 53, 75, 150, 200, 386 |
| fecB,fecC-fecB | yciT, arsR | 2 | 0.11; 0.17 | 46, 219 |
| fecE | ybaQ | 1 | 0.12 | 478 |
| fecE-fecD-fecC-fecB-fecA,fecC-fecB-fecA,fecB-fecA | iclR | 1 | 0.24 | 128 |
| feoA-feoB-feoC | ascG, yncC, dicA, iclR, argR | 5 | 0.17; 0.27; 0.16; 0.17; 0.11 | 3, 111, 200, 271, 350 |
| fepB | cpxR, argP, ybaQ | 3 | 0.16; 0.20; 0.12 | 53, 203, 449 |
| fepC-fepG-fepD,fepG-fepD | argR, dicC, ttk, iclR, ybaQ | 5 | 0.50; 0.28; 0.28; 0.16; 0.14 | 26, 84, 99, 302, 417 |
| fes-entF-fepE-ybdZ,fes-ybdZ | yfeC, ybaQ, iscR, ttk, uxuR, lldR, cynR, nac | 8 | 0.16; 0.26; 0.10; 0.23; 0.14; 0.11; 0.10; 0.12 | 42, 132, 145, 152, 164, 242, 293, 362 |
| fetA-fetB | kdgR, nac | 2 | 0.14; 0.13 | 19, 317 |
| ffh,rpsP-ffh,rplS-trmD-rimM-rpsP-ffh | aaeR | 1 | 0.17 | 311 |
| ffs | lldR, yfeC, cysB | 3 | 0.17; 0.10; 0.20 | 96, 117, 125 |
| fhuA,fhuA-fhuC,fhuA-fhuC-fhuD,fhuA-fhuC-fhuD-fhuB | dicA, cbl, yidZ, yncC, argR, dicC | 6 | 0.48; 0.13; 0.22; 0.15; 0.14; 0.11 | 10, 169, 171, 244, 279, 472 |
| fhuC,fhuC-fhuD | nhaR, yidZ, relE, sxy, sfsB | 5 | 0.11; 0.52; 0.22; 0.17; 0.11 | 4, 24, 41, 211, 369 |
| fhuE | nhaR, arsR, argP, nsrR, tyrR, yjjQ, dicC, yncC, ybaQ, iclR, ulaR | 11 | 0.23; 0.45; 0.48; 0.16; 0.21; 0.36; 0.31; 0.27; 0.19; 0.16; 0.12 | 2, 23, 29, 30, 33, 48, 67, 105, 261, 286, 303 |
| fhuF | hcaR, mraZ, nac, yncC, yeiI, iclR | 6 | 0.11; 0.17; 0.28; 0.17; 0.15; 0.15 | 40, 41, 115, 210, 304, 325 |
| fic-yhfG-ppiA,yhfG-ppiA,ppiA | ydjF, cpxR, yjjQ, arsR | 4 | 0.14; 0.13; 0.28; 0.12 | 18, 88, 89, 392 |
| fieF-pfkA,fieF | dicA, yidZ, iscR, uxuR, yncC, cynR, nac, yeiI | 8 | 0.25; 0.29; 0.11; 0.14; 0.19; 0.12; 0.15; 0.10 | 69, 106, 127, 162, 178, 234, 255, 457 |
| fimA-fimI-fimC,fimA,fimA-fimI-fimC-fimD-fimF-fimG-fimH | ycjW, rutR, ybcM, yfeC, hcaR, cbl, ypdC, dicA | 8 | 0.26; 0.25; 0.10; 0.16; 0.11; 0.10; 0.12; 0.12 | 9, 18, 26, 39, 46, 246, 260, 306 |
| fimA3p | dicA, argR, cysB, yjjQ, arsR, yidZ, cbl, dicC | 8 | 0.63; 0.29; 0.24; 0.28; 0.24; 0.23; 0.11; 0.18 | 4, 76, 79, 96, 105, 160, 226, 244 |
| fimB | dicA, gcvA, cysB, yjjQ, argP, yidZ, dicC | 7 | 0.63; 0.19; 0.24; 0.28; 0.27; 0.23; 0.18 | 5, 71, 78, 95, 121, 159, 245 |
| fimE | yoeB, modE, yncC, yeiE, cynR, nrdR, aaeR, sfsB | 8 | 0.11; 0.12; 0.57; 0.21; 0.23; 0.13; 0.19; 0.11 | 4, 9, 34, 59, 62, 115, 269, 374 |
| fimZ | yheO | 1 | 0.11 | 111 |
| fixA-fixB-fixC,fixA-fixB-fixC-fixX | racR, dicA, ttk, yafN, cbl, ypdC, aaeR, arsR | 8 | 0.13; 0.29; 0.28; 0.14; 0.14; 0.16; 0.20; 0.13 | 28, 34, 102, 147, 148, 170, 265, 355 |
| fklB,fklB-cycA | dicC, nac, cynR, cysB | 4 | 0.23; 0.23; 0.13; 0.11 | 151, 161, 211, 323 |
| flc | sfsB, yncC, yeiI, yidZ | 4 | 0.21; 0.21; 0.17; 0.17 | 153, 155, 263, 268 |
| fldB | yhaJ, ulaR, cysB, yafN, ybaQ | 5 | 0.10; 0.19; 0.17; 0.11; 0.17 | 75, 164, 171, 227, 320 |
| flgB-flgC-flgD-flgE-flgF,flgB-flgC-flgD-flgE-flgF-flgG-flgH-flgI-flgJ | mraZ, iclR, ybaQ | 3 | 0.16; 0.15; 0.15 | 46, 324, 370 |
| flgK-flgL | nrdR, sxy, yncC, dicC | 4 | 0.14; 0.22; 0.22; 0.11 | 97, 127, 140, 505 |
| flgN-flgM | ybaQ, ypdC, uxuR, yjjQ | 4 | 0.32; 0.18; 0.12; 0.15 | 85, 142, 207, 228 |
| flgN-flgM-flgA | mraZ, iclR, ybaQ | 3 | 0.16; 0.15; 0.15 | 46, 323, 369 |
| flhC-flhD | ebgR, cysB, ybaQ, yjjQ | 4 | 0.10; 0.43; 0.22; 0.11 | 16, 17, 217, 343 |
| flhE-flhA-flhB | iscR, treR, gcvA | 3 | 0.14; 0.18; 0.13 | 76, 96, 149 |
| fliC | yeiE, yafN | 2 | 0.12; 0.12 | 154, 181 |
| fliD-fliS-fliT | yeiE, yafN | 2 | 0.12; 0.12 | 154, 181 |
| fliE | matA, dicA | 2 | 0.19; 0.22 | 33, 96 |
| fliF-fliG-fliH-fliI-fliJ-fliK | matA, dicA | 2 | 0.19; 0.22 | 34, 96 |
| fliL-fliM-fliN-fliO-fliP-fliQ-fliR | ttk, sfsB, ypdC, tyrR, nsrR, yagI | 6 | 0.46; 0.43; 0.23; 0.14; 0.10; 0.12 | 25, 39, 75, 85, 110, 188 |
| fliY-fliZ-fliA | mraZ, lldR, melR, gcvA, dicC, deoR, dicA, ypdC, iclR | 9 | 0.22; 0.20; 0.15; 0.11; 0.18; 0.13; 0.12; 0.11; 0.14 | 18, 63, 131, 197, 246, 258, 318, 318, 354 |
| flk | sxy, yidZ, cysB, pdhR, allR, uxuR, nac, iclR, ttk | 9 | 1.00; 0.74; 0.30; 0.11; 0.10; 0.12; 0.16; 0.17; 0.13 | 1, 9, 42, 74, 93, 200, 237, 263, 357 |
| flu | ybaQ, yhjC, uxuR, yeiE, nrdR, yafN | 6 | 0.47; 0.10; 0.19; 0.16; 0.13; 0.12 | 25, 27, 85, 93, 118, 174 |
| flxA | gadW, ygiT, tyrR, argP, ybaQ, yjjQ | 6 | 0.23; 0.11; 0.16; 0.29; 0.17; 0.10 | 26, 43, 68, 95, 308, 364 |
| fmt-rsmB | pdhR, sxy, yeiI, arsR, iclR | 5 | 0.19; 0.27; 0.22; 0.13; 0.14 | 21, 81, 170, 348, 383 |
| fnrS | pepA, yegW, nagC, dicC, envY, cynR | 6 | 0.12; 0.10; 0.10; 0.24; 0.11; 0.14 | 17, 41, 70, 114, 121, 177 |
| folA | yhfZ, dicA, ttk, sfsB | 4 | 0.14; 0.19; 0.18; 0.13 | 4, 128, 222, 299 |
| folB,bacA-folB | ycjW, yidZ, sfsB, ttk | 4 | 0.22; 0.13; 0.10; 0.12 | 21, 388, 396, 419 |
| folC-accD-dedA,accD-dedA | nsrR, cysB, gadW, yafN | 4 | 0.11; 0.20; 0.10; 0.11 | 106, 113, 164, 234 |
| folK-pcnB | yafN, matA | 2 | 0.30; 0.14 | 20, 72 |
| folP-ftsH,ftsH | yjiR, lldR, envY, glnG | 4 | 0.15; 0.20; 0.14; 0.10 | 9, 64, 76, 139 |
| folX-yfcH | melR, yagI, yafN, cynR, aaeR, yjjQ, yeiI, deoR, yncC | 9 | 0.25; 0.20; 0.12; 0.13; 0.21; 0.14; 0.13; 0.10; 0.12 | 40, 73, 187, 209, 249, 269, 330, 341, 356 |
| fpr | yidZ | 1 | 0.29 | 108 |
| fpr-glpX,glpX | arsR, lldR | 2 | 0.26; 0.16 | 90, 112 |
| frc | zur, yeiE, dicC, melR, dicA, ulaR | 6 | 0.12; 0.22; 0.27; 0.17; 0.11; 0.11 | 17, 53, 95, 100, 326, 331 |
| frdD-frdC-frdB-frdA,frdB-frdA | yeiI, yafN | 2 | 0.42; 0.16 | 56, 113 |
| fre | basR, ypdC, sxy, yafN, arsR | 5 | 0.18; 0.25; 0.27; 0.14; 0.13 | 19, 68, 87, 140, 359 |
| frlA-frlB-frlD-yhfR-frlC | yhfR, gcvA, ybaQ, tyrR, yeiI, argR, nac, deoR, iclR | 9 | 1.00; 0.45; 0.45; 0.15; 0.23; 0.18; 0.14; 0.12; 0.14 | 1, 12, 33, 75, 159, 187, 279, 282, 360 |
| frmB-frmA-frmR | dgoR, nrdR, ybaQ, yncC | 4 | 0.13; 0.11; 0.20; 0.10 | 3, 185, 243, 396 |
| frr-dxr,frr-dxr-ispU-cdsA,frr-dxr-ispU,frr | yafN, cysB, ybaQ | 3 | 0.61; 0.38; 0.19 | 4, 21, 271 |
| frsA,frsA-crl | yeiI, dicC | 2 | 0.15; 0.11 | 301, 508 |
| fruA-fruK-fruB | uxuR, yagI, yhaJ, tyrR, ypdC, cbl | 6 | 0.29; 0.29; 0.12; 0.13; 0.16; 0.11 | 33, 37, 59, 92, 158, 214 |
| fruR,fruR-mraZ-rsmH-ftsL | rutR, yeiI, yjjQ, nrdR, sfsB, iclR | 6 | 0.16; 0.33; 0.20; 0.10; 0.12; 0.12 | 56, 90, 168, 188, 335, 439 |
| frvR-frvX-frvB-frvA | sfsB, fimZ, glnG, yncC, yafN, sxy | 6 | 0.53; 0.25; 0.11; 0.20; 0.10; 0.10 | 20, 110, 123, 164, 249, 356 |
| frwC-frwB | yijO, cadC, fimZ, deoR, sxy, yidZ, argR | 7 | 1.00; 0.16; 0.34; 0.22; 0.22; 0.19; 0.10 | 1, 53, 57, 81, 129, 235, 368 |
| frwD | fimZ, ttk, yidZ | 3 | 0.33; 0.11; 0.10 | 60, 444, 490 |
| fryA-ypdE-ypdF-fryC-fryB | cusR, ypdC, ybaQ | 3 | 0.12; 0.21; 0.13 | 48, 99, 443 |
| fsaA | yciT, hdfR, ypdC, arsR | 4 | 1.00; 0.17; 0.41; 0.16 | 2, 4, 19, 250 |
| fsr | arsR, yjiR, yhfR, yagI, matA, yncC, deoR, iclR, aaeR, ypdC | 10 | 0.52; 0.11; 0.11; 0.22; 0.15; 0.16; 0.13; 0.16; 0.18; 0.11 | 17, 29, 41, 58, 60, 224, 246, 277, 291, 313 |
| ftnA | cysB, envY, fimZ, iscR, uxuR, cbl, gcvA, argP, yncC | 9 | 0.50; 0.18; 0.26; 0.11; 0.16; 0.12; 0.10; 0.14; 0.11 | 14, 46, 99, 122, 124, 200, 233, 319, 378 |
| ftnB | yjjQ, dicA, nac, argR, yeiI, cysB, sxy, melR, dicC, ypdC | 10 | 0.41; 0.29; 0.38; 0.29; 0.30; 0.21; 0.21; 0.14; 0.18; 0.11 | 33, 35, 58, 77, 108, 111, 139, 155, 258, 304 |
| ftsA-ftsZ | rutR | 1 | 0.21 | 36 |
| ftsB,truD-ispF-ispD-ftsB,umpG-truD-ispF-ispD-ftsB,pcm-umpG-truD-ispF-ispD-ftsB | cpxR, lldR, envY, glnG, yeiI, sfsB | 6 | 0.27; 0.31; 0.21; 0.10; 0.18; 0.12 | 15, 19, 29, 137, 250, 339 |
| ftsH-rlmE,rlmE | glpR, treR, nsrR, yncC, envY, yjjQ, yidZ, aaeR, iclR | 9 | 0.13; 0.37; 0.15; 0.35; 0.10; 0.18; 0.19; 0.17; 0.13 | 10, 10, 35, 82, 138, 186, 231, 310, 403 |
| ftsK | yjjQ, galS, yeiI | 3 | 0.39; 0.13; 0.11 | 35, 49, 437 |
| ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC | rutR | 1 | 0.28 | 15 |
| ftsN-cytR,cytR | yidZ, ybcM, sxy, fimZ | 4 | 0.88; 0.13; 0.25; 0.23 | 5, 11, 100, 125 |
| ftsP | yjjQ, galS, ypdC, uxuR, yidZ, sxy | 6 | 0.56; 0.11; 0.19; 0.15; 0.22; 0.17 | 18, 98, 122, 144, 178, 208 |
| ftsP-plsC,plsC | aaeR, yeiI | 2 | 0.47; 0.44 | 36, 53 |
| ftsQ-ftsA,ftsQ-ftsA-ftsZ,ftsQ | dicC, ttk | 2 | 0.20; 0.11 | 220, 453 |
| ftsX-ftsE-ftsY | nagC, yeiI, aaeR, arsR | 4 | 0.16; 0.43; 0.18; 0.13 | 28, 55, 304, 328 |
| ftsZ,ftsZ-lpxC-secM,ftsZ-lpxC | arsR, uxuR, sfsB, fimZ, lldR | 5 | 0.26; 0.17; 0.22; 0.15; 0.10 | 92, 113, 148, 207, 266 |
| fucI | yfeC, ypdC, yeiI | 3 | 0.11; 0.13; 0.16 | 93, 243, 281 |
| fucO-fucA | fucR, hcaR, dgsA, ulaR, deoR, yeiE, lldR, ttk, yidZ, aaeR | 10 | 1.00; 0.15; 0.14; 0.23; 0.18; 0.12; 0.11; 0.17; 0.13; 0.11 | 1, 21, 56, 105, 123, 157, 243, 258, 369, 513 |
| fucP-fucI-fucK-fucU-fucR | fucR, hcaR, dgsA, ulaR, deoR, gcvA, iclR, ttk, nac, yidZ, aaeR | 11 | 1.00; 0.15; 0.14; 0.23; 0.18; 0.14; 0.21; 0.17; 0.14; 0.10; 0.11 | 2, 20, 56, 106, 124, 138, 175, 257, 282, 497, 514 |
| fucR | yddM, yncC, sxy, dicC | 4 | 0.10; 0.15; 0.12; 0.10 | 71, 255, 315, 538 |
| fucU | yagI, yddM | 2 | 0.21; 0.10 | 65, 72 |
| fumA,fumC-fumA | allR, cynR, ttk | 3 | 0.11; 0.14; 0.13 | 69, 190, 392 |
| fumB | yidZ, sxy, treR | 3 | 0.40; 0.24; 0.12 | 45, 107, 170 |
| fumB-dcuB | argP, cbl, dicA, yagI, fimZ, arsR, ybaQ | 7 | 0.37; 0.22; 0.20; 0.16; 0.17; 0.14; 0.17 | 50, 55, 119, 123, 182, 311, 312 |
| fumC | basR, iclR | 2 | 0.12; 0.15 | 41, 339 |
| fur | cpxR, yeiI, cadC, yafN, yidZ, ybaQ | 6 | 0.15; 0.39; 0.10; 0.11; 0.16; 0.15 | 64, 65, 118, 216, 284, 375 |
| fur-fldA-uof,fldA | ulaR | 1 | 0.15 | 233 |
| fur-fldA-ybfE-uof,ybfE | argP, melR, yidZ | 3 | 0.29; 0.15; 0.11 | 98, 138, 457 |
| fur-uof | cpxR, yfeC, yeiI, cadC, yidZ, ybaQ | 6 | 0.15; 0.14; 0.39; 0.10; 0.16; 0.15 | 64, 64, 65, 119, 285, 375 |
| fxsA | yncC, nrdR, gadW, yheO, treR, dicC, argR, iclR | 8 | 0.89; 0.25; 0.15; 0.10; 0.12; 0.21; 0.12; 0.11 | 7, 20, 83, 120, 164, 183, 310, 456 |
| G0-10706 | cpxR, iscR, lldR, envY, exuR, nrdR, yafN | 7 | 0.40; 0.34; 0.19; 0.13; 0.10; 0.13; 0.15 | 5, 11, 75, 86, 93, 111, 124 |
| gabD-gabT-gabP | nac | 1 | 0.41 | 38 |
| gadC | treR, galS, yagI, dicC, yeiI, sfsB, yncC, iclR | 8 | 0.33; 0.13; 0.17; 0.22; 0.21; 0.17; 0.13; 0.10 | 18, 50, 116, 177, 190, 216, 302, 502 |
| gadC-gadB | srlR, gadW, cbl, dgsA, cysB, yeiI, nac | 7 | 0.16; 0.19; 0.17; 0.10; 0.15; 0.13; 0.12 | 20, 40, 109, 153, 212, 334, 345 |
| gadE-gadF,gadE-mdtE-mdtF-gadF | purR, ompR, betI, matA, cynR, nrdR, cysB, sfsB, argR, aaeR | 10 | 0.16; 0.12; 0.12; 0.15; 0.20; 0.12; 0.17; 0.16; 0.13; 0.10 | 6, 16, 23, 57, 100, 139, 169, 221, 293, 539 |
| gadW | gadW, yncC, ydjF, nac, tyrR, aaeR, cysB, yidZ, dicA, dicC | 10 | 0.40; 0.58; 0.11; 0.31; 0.12; 0.23; 0.14; 0.15; 0.11; 0.14 | 6, 27, 48, 89, 118, 205, 240, 304, 320, 357 |
| gadX,gadW-gadX | purR, cadC, yncC, cynR, yafN, cysB, aaeR, yeiI | 8 | 0.15; 0.20; 0.43; 0.20; 0.16; 0.12; 0.15; 0.12 | 8, 26, 60, 99, 114, 308, 383, 388 |
| gadX-gadA | aaeR, ybaQ, yncC | 3 | 0.41; 0.22; 0.12 | 57, 216, 341 |
| gadY | gadW, yncC, ydjF, nac, tyrR, aaeR, cysB, dicA, dicC | 9 | 0.40; 0.58; 0.11; 0.31; 0.12; 0.23; 0.14; 0.14; 0.14 | 6, 27, 49, 89, 118, 206, 240, 242, 358 |
| galK | uxuR, iclR | 2 | 0.15; 0.12 | 143, 438 |
| galM-galK-galT-galE,galK-galT-galE,galT-galE,galE | galR, galS, ycjW, yeiE, nsrR, cbl, yncC, yeiI, sxy | 9 | 1.00; 0.22; 0.16; 0.21; 0.10; 0.12; 0.15; 0.15; 0.12 | 1, 9, 40, 63, 113, 203, 268, 307, 327 |
| galP | galS, galR, nagC, deoR, yjjQ, yhfR, dicA, yidZ, dgsA, yeiI, iclR, aaeR | 12 | 1.00; 0.46; 0.63; 0.34; 0.51; 0.10; 0.24; 0.28; 0.11; 0.21; 0.20; 0.22 | 1, 2, 3, 18, 23, 53, 85, 114, 115, 193, 204, 211 |
| galR | galR, yegW, ompR, mraZ, yidZ, ybaQ, iclR | 7 | 0.15; 0.12; 0.10; 0.15; 0.37; 0.31; 0.14 | 7, 19, 27, 59, 61, 89, 387 |
| galS | galR, marA, deoR, iclR, nac | 5 | 0.12; 0.16; 0.29; 0.34; 0.10 | 13, 16, 30, 41, 392 |
| galU | yddM, ttk, yjjQ, uxuR, argP, sfsB, yncC | 7 | 0.14; 0.19; 0.15; 0.11; 0.17; 0.13; 0.10 | 39, 206, 232, 252, 265, 300, 408 |
| gapA,gapA-yeaD | fimZ, treR, deoR, yncC, dicC | 5 | 0.25; 0.15; 0.15; 0.13; 0.11 | 114, 120, 198, 315, 511 |
| gapC | yciT, fimZ, cpxR, aaeR, uxuR, ybaQ | 6 | 0.14; 0.39; 0.16; 0.34; 0.13; 0.12 | 19, 44, 56, 98, 182, 467 |
| garD | yhaJ, arsR, dicA, dicC | 4 | 0.11; 0.19; 0.14; 0.10 | 73, 187, 252, 526 |
| garR | aaeR, sxy, yncC | 3 | 0.22; 0.15; 0.12 | 215, 256, 335 |
| gatC-gatB-gatA | yfeC, argP, yidZ | 3 | 0.12; 0.15; 0.11 | 69, 315, 446 |
| gatD-gatC-gatB-gatA-gatZ,gatC-gatB-gatA-gatZ,gatB-gatA-gatZ | gadW, treR, yeiI | 3 | 0.10; 0.11; 0.13 | 161, 190, 341 |
| gatD-gatC-gatB-gatA-gatZ-gatY,gatC-gatB-gatA-gatZ-gatY,gatB-gatA-gatZ-gatY | hdfR, lldR | 2 | 0.16; 0.14 | 7, 160 |
| gcd | argP, arsR, ybaQ, cynR | 4 | 0.38; 0.20; 0.22; 0.12 | 44, 158, 203, 255 |
| gcl-hyi-glxR-ybbW-allB-ybbY-glxK | allR, yheO, ulaR, yhaJ, ybaQ, yjjQ, iclR, arsR, sxy | 9 | 1.00; 0.38; 0.80; 0.16; 0.27; 0.22; 0.17; 0.14; 0.11 | 1, 5, 6, 35, 114, 139, 264, 306, 333 |
| gcvB | gcvA, galS, tyrR, dgsA | 4 | 0.30; 0.15; 0.17; 0.11 | 26, 31, 62, 122 |
| gcvH-gcvT,gcvP-gcvH-gcvT | gcvA, cynR, basR, nac, cbl, deoR, yeiE, fimZ, dicA | 9 | 0.96; 0.30; 0.12; 0.38; 0.20; 0.19; 0.11; 0.13; 0.12 | 2, 36, 46, 56, 72, 119, 173, 238, 309 |
| gcvP | dicC, glnG, uxuR, relE, ttk, fimZ | 6 | 0.38; 0.17; 0.24; 0.13; 0.28; 0.22 | 39, 54, 56, 94, 103, 132 |
| gcvR-bcp,gcvR | yafN | 1 | 0.11 | 222 |
| gdhA | cbl, gadW, nac, yagI, dicC, yjjQ, cysB, sfsB | 8 | 1.00; 0.25; 0.33; 0.17; 0.22; 0.17; 0.12; 0.12 | 1, 14, 76, 114, 158, 214, 289, 323 |
| gfcA | dgsA, uxuR | 2 | 0.12; 0.11 | 110, 229 |
| gfcD-gfcC | cysB, pspF, cpxR, cbl, gcvA, uxuR | 6 | 0.43; 0.10; 0.20; 0.14; 0.12; 0.11 | 16, 23, 29, 147, 176, 276 |
| gfcD-gfcC-gfcB | ygiT, cysB, exuR, yidZ, yeiE, cbl | 6 | 0.19; 0.42; 0.22; 0.33; 0.15; 0.13 | 4, 19, 23, 80, 101, 180 |
| ggt | melR, basR, lldR | 3 | 0.27; 0.10; 0.13 | 32, 75, 179 |
| ghoS-ghoT | glnG, cysB, arsR | 3 | 0.19; 0.12; 0.13 | 33, 306, 330 |
| ghrA,ghrA-ycdX-ycdY-ycdZ,ghrA-ycdX-ycdY | pdhR, yheO, yeiI, argP | 4 | 0.22; 0.12; 0.33; 0.13 | 14, 87, 89, 351 |
| ghrB | yjjQ, cbl, sfsB, argR, cynR, ybaQ, ypdC | 7 | 0.59; 0.19; 0.18; 0.15; 0.13; 0.20; 0.12 | 12, 84, 189, 224, 230, 240, 289 |
| ghxP-yjcE,ghxP | cusR, rutR, nsrR, yidZ, aaeR | 5 | 0.15; 0.17; 0.11; 0.24; 0.26 | 24, 52, 88, 146, 166 |
| glcA-glcB | ttk, basR, gadW, iclR | 4 | 0.52; 0.11; 0.12; 0.15 | 17, 57, 117, 349 |
| glcA-glcB-glcG-glcD-glcF-glcE | pdhR, exuR, deoR, ybaQ, sfsB, yeiI | 6 | 0.30; 0.11; 0.14; 0.19; 0.14; 0.10 | 7, 84, 219, 266, 287, 452 |
| glcB-glcG | ttk, basR, arsR, gadW, ypdC, iclR, argR, yidZ | 8 | 0.48; 0.11; 0.30; 0.12; 0.14; 0.15; 0.11; 0.13 | 22, 57, 67, 116, 220, 350, 355, 374 |
| glcC | pdhR, exuR, deoR, ybaQ, sfsB, dicC, yeiI | 7 | 0.30; 0.11; 0.14; 0.19; 0.14; 0.13; 0.10 | 7, 84, 220, 266, 286, 393, 452 |
| gldA-fsaB-frwA | yijO, cadC, fimZ, deoR, sxy, yidZ, argR | 7 | 1.00; 0.16; 0.34; 0.22; 0.22; 0.19; 0.10 | 2, 53, 58, 81, 128, 234, 368 |
| glgB-asd,asd | ybhD, envY, ypdC, argP, fimZ, yjjQ | 6 | 0.23; 0.16; 0.24; 0.22; 0.16; 0.14 | 8, 62, 74, 171, 188, 268 |
| glgP-glgA,glgA | yegW, yagI | 2 | 0.21; 0.13 | 3, 154 |
| glgP-glgA-glgC,glgC | cysB, deoR | 2 | 0.16; 0.10 | 182, 338 |
| glgP-glgA-glgC-glgX-glgB,glgB | uxuR, sxy, argR, dicC | 4 | 0.25; 0.23; 0.18; 0.15 | 51, 121, 172, 316 |
| glgS | yhaJ, tyrR, cbl, deoR, yjjQ, yncC, aaeR | 7 | 0.10; 0.11; 0.13; 0.13; 0.15; 0.11; 0.14 | 77, 138, 165, 234, 245, 390, 393 |
| glk | iclR, cysB, yagI, sxy | 4 | 0.31; 0.21; 0.13; 0.10 | 59, 109, 163, 365 |
| glmM-folP | ypdC, sxy, melR | 3 | 0.34; 0.37; 0.18 | 37, 57, 99 |
| glmS | nrdR, uxuR, arsR | 3 | 0.12; 0.15; 0.19 | 128, 136, 176 |
| glmS-glmU | nagC, basR, yagI, sxy, fimZ, arsR | 6 | 0.26; 0.17; 0.19; 0.16; 0.11; 0.13 | 11, 21, 78, 233, 297, 347 |
| glmZ | argP, iclR, yncC | 3 | 0.25; 0.18; 0.12 | 139, 241, 333 |
| glnA3p | iscR, argR | 2 | 0.15; 0.14 | 58, 252 |
| glnB | uxuR, aaeR | 2 | 0.16; 0.20 | 126, 256 |
| glnB-yfhA,yfhA | envY, uxuR | 2 | 0.36; 0.28 | 6, 35 |
| glnE-ygiF | iclR, ybaQ, nac, gcvA, arsR | 5 | 0.43; 0.31; 0.22; 0.12; 0.13 | 23, 88, 165, 180, 334 |
| glnG-glnL | glnG, exuR, yjjQ | 3 | 0.52; 0.12; 0.14 | 8, 68, 259 |
| glnG-glnL-glnA-yshB,glnG-glnL-glnA,glnL-glnA,glnA | glnG, yhaJ, ttk, deoR, dicC | 5 | 0.63; 0.12; 0.18; 0.13; 0.14 | 3, 57, 224, 242, 347 |
| glnK-amtB | glnG, ybaQ, argR | 3 | 0.27; 0.26; 0.19 | 19, 128, 165 |
| glnQ | yhaJ, mraZ, ybaQ | 3 | 0.13; 0.14; 0.15 | 51, 77, 360 |
| glnQ-glnP-glnH,glnH | glnG, cadC, ypdC, arsR | 4 | 1.00; 0.17; 0.32; 0.17 | 1, 43, 47, 211 |
| glnS | nsrR, treR, yncC | 3 | 0.11; 0.13; 0.18 | 98, 151, 188 |
| glnU-leuW-metT-asnB,asnB,glnW-glnU-leuW-metT-asnB | asnC, sfsB, cadC, lldR, mraZ, yagI, yncC | 7 | 0.33; 0.39; 0.12; 0.16; 0.11; 0.12; 0.14 | 3, 53, 97, 109, 115, 197, 293 |
| glnX-glnV-metU-glnW | dicC, sxy | 2 | 0.17; 0.13 | 282, 284 |
| glnX-glnV-metU-glnW-glnU-leuW-metT | yhaJ, dicC, sxy | 3 | 0.25; 0.17; 0.13 | 15, 283, 283 |
| gloA-rnt,gloA | yeiE, cysB, melR, ybaQ, argR | 5 | 0.39; 0.23; 0.17; 0.22; 0.10 | 13, 89, 101, 211, 362 |
| gloB | yddM, yidZ, melR, yncC | 4 | 0.11; 0.36; 0.11; 0.10 | 68, 68, 219, 407 |
| glpA-glpB,glpA-glpB-glpC | glpR, yfeC, deoR, yheO, dicC, ulaR, aaeR | 7 | 0.51; 0.24; 0.25; 0.10; 0.24; 0.20; 0.12 | 4, 13, 47, 113, 117, 140, 472 |
| glpD | glpR, ydjF, tyrR, dicC | 4 | 1.00; 0.35; 0.22; 0.14 | 1, 4, 29, 339 |
| glpK | yciT, ycjW, yncC, yidZ, lldR, ttk | 6 | 0.11; 0.14; 0.26; 0.25; 0.11; 0.11 | 48, 49, 120, 137, 227, 455 |
| glpQ | mraZ, argR | 2 | 0.20; 0.27 | 24, 83 |
| glpR | yeiI, ypdC, galS, uxuR | 4 | 0.79; 0.48; 0.16; 0.13 | 9, 13, 25, 196 |
| glpR-glpG | ydjF, tyrR | 2 | 0.35; 0.22 | 2, 30 |
| glpR-glpG-glpE | glpR, ydjF, tyrR, dicC | 4 | 1.00; 0.35; 0.22; 0.14 | 2, 3, 28, 340 |
| glpX-glpK-glpF,glpK-glpF | ybhD, glpR, srlR, arsR, cynR | 5 | 0.24; 0.12; 0.12; 0.18; 0.13 | 7, 12, 34, 195, 207 |
| glrK | sfsB, basR, gcvA, iscR, uxuR, yidZ, nac, dicC | 8 | 0.43; 0.11; 0.16; 0.11; 0.15; 0.15; 0.10; 0.11 | 38, 54, 107, 129, 147, 309, 400, 494 |
| glsA-ybaT | gadW, envY, nagC, yagI, galS, mraZ, yeiI, deoR, iclR | 9 | 0.52; 0.25; 0.16; 0.20; 0.12; 0.12; 0.18; 0.10; 0.10 | 4, 19, 31, 74, 75, 104, 255, 357, 491 |
| gltA | nac, nrdR, cynR, gcvA, yfeC, iclR, dicA, dicC | 8 | 0.79; 0.18; 0.23; 0.17; 0.11; 0.22; 0.14; 0.14 | 6, 49, 67, 92, 96, 168, 243, 334 |
| gltB-gltD-gltF | lldR, iclR, argR, nac, yeiI | 5 | 0.38; 0.32; 0.33; 0.10; 0.11 | 12, 52, 61, 411, 422 |
| gltF | gcvA, nagC, yjiR, yncC, arsR, ttk, aaeR | 7 | 0.41; 0.16; 0.10; 0.39; 0.14; 0.14; 0.15 | 15, 30, 38, 70, 321, 339, 366 |
| gltK-gltJ-gltI-insH-3,gltJ-gltI-insH-3,insH-3 | glnG, dgsA, dicC, yagI, ybaQ, argP | 6 | 0.37; 0.16; 0.35; 0.19; 0.18; 0.15 | 11, 40, 51, 94, 288, 317 |
| gltL-gltK-gltJ-gltI-sroC,gltL-gltK-gltJ-gltI | ycjW, uxuR, cysB | 3 | 0.14; 0.16; 0.14 | 50, 120, 236 |
| gltP | nac, argR, ulaR, arsR, argP | 5 | 0.55; 0.47; 0.25; 0.25; 0.18 | 25, 31, 80, 98, 253 |
| gltS | yfeC, dicC, galS, ulaR, cynR, sfsB, arsR, yidZ | 8 | 0.21; 0.37; 0.13; 0.14; 0.11; 0.12; 0.11; 0.11 | 23, 43, 51, 251, 264, 330, 417, 450 |
| gltT | ycjW, treR, gadW, sxy, sfsB | 5 | 0.18; 0.23; 0.11; 0.17; 0.16 | 30, 43, 147, 218, 231 |
| gltU | ycjW, treR, gadW, argR, sxy, sfsB | 6 | 0.18; 0.23; 0.11; 0.17; 0.17; 0.16 | 31, 47, 147, 194, 216, 227 |
| gltW | ycjW, treR, yncC, gadW, sxy, sfsB | 6 | 0.18; 0.23; 0.23; 0.11; 0.17; 0.16 | 26, 44, 133, 150, 219, 227 |
| gltW-rrsG,rrsG,rrfG-rrlG-gltW-rrsG | yciT, arsR | 2 | 0.13; 0.18 | 29, 190 |
| gltX | relE, matA, ttk, tyrR, nrdR | 5 | 0.50; 0.22; 0.26; 0.11; 0.12 | 7, 20, 126, 131, 134 |
| glvG-glvB-glvC | deoR, iscR, yjjQ, argR, lldR | 5 | 0.20; 0.11; 0.18; 0.14; 0.11 | 94, 118, 181, 241, 252 |
| glxK | pdhR, yncC, iclR | 3 | 0.12; 0.17; 0.13 | 65, 218, 410 |
| glyA | nsrR, nagC, yeiI, iclR | 4 | 0.38; 0.16; 0.12; 0.11 | 5, 24, 382, 478 |
| glyS-glyQ | galS, yjjQ, gadW, envY, cynR | 5 | 0.32; 0.83; 0.21; 0.12; 0.12 | 4, 5, 35, 102, 250 |
| glyT-thrT-tufB-secE-nusG,glyT-thrT-tufB | pepA, mraZ, relE, argP, tyrR, ttk, lldR, deoR | 8 | 0.14; 0.23; 0.31; 0.24; 0.11; 0.19; 0.12; 0.11 | 4, 16, 24, 150, 164, 198, 222, 316 |
| glyU | tyrR, uxuR, yidZ, ttk | 4 | 0.14; 0.12; 0.19; 0.16 | 81, 220, 239, 261 |
| glyV-glyX-glyY | tyrR, relE, ypdC, yafN, melR | 5 | 0.33; 0.39; 0.36; 0.19; 0.11 | 8, 17, 33, 72, 200 |
| gmhA,gmhA-yafJ | kdgR, pdhR, arsR, cpxR, ybaQ, gcvA | 6 | 0.17; 0.20; 0.28; 0.13; 0.25; 0.11 | 9, 19, 74, 85, 151, 192 |
| gmhB-rrsH,gmhB | allR, uxuR, yjjQ, argR | 4 | 0.14; 0.23; 0.20; 0.11 | 35, 61, 165, 344 |
| gmk-rpoZ-spoT-trmH,gmk | sxy, yafN, yeiI, treR, glnG, deoR, aaeR | 7 | 0.58; 0.32; 0.49; 0.16; 0.11; 0.13; 0.12 | 14, 18, 36, 107, 128, 252, 471 |
| gmr,gmr-yciZ | yfeC, treR, cadC, yagI, sxy | 5 | 0.15; 0.19; 0.10; 0.11; 0.13 | 55, 78, 117, 206, 277 |
| gnd | tyrR, ulaR, deoR, argR, iclR, ttk, dicC | 7 | 0.13; 0.22; 0.15; 0.14; 0.13; 0.11; 0.10 | 93, 113, 200, 258, 409, 474, 539 |
| gndA | ulaR, argR, ttk, iclR, dicC | 5 | 0.22; 0.14; 0.11; 0.10; 0.10 | 113, 259, 475, 482, 540 |
| gnsA | deoR, nagC, matA, ttk | 4 | 0.46; 0.17; 0.20; 0.40 | 6, 23, 25, 50 |
| gnsB | galS, ycgE, ydjF, yheO, argR, rutR, aaeR | 7 | 0.31; 0.10; 0.13; 0.10; 0.21; 0.11; 0.28 | 5, 10, 26, 123, 133, 144, 150 |
| gntK,gntK-gntU | sfsB, gadW, yidZ | 3 | 0.49; 0.12; 0.20 | 27, 126, 217 |
| gntK-gntR-gntU,gntK-gntR,gntR | treR, cysB, argR | 3 | 0.26; 0.31; 0.14 | 31, 38, 256 |
| gntP | uxuR, exuR, ypdC, iclR, ulaR, cbl, yeiI, deoR, argP | 9 | 1.00; 0.22; 0.32; 0.29; 0.21; 0.13; 0.20; 0.12; 0.12 | 2, 20, 43, 75, 126, 181, 205, 295, 375 |
| gntT | nrdR | 1 | 0.11 | 155 |
| gntX-nfuA | sxy, cysB, dicC | 3 | 0.43; 0.16; 0.10 | 37, 190, 541 |
| gor-agrA,gor | deoR | 1 | 0.14 | 231 |
| gpmA | ttk, ascG, srlR, sfsB, yidZ, relE, fimZ, yeiI, dicC | 9 | 1.00; 0.14; 0.17; 0.38; 0.37; 0.12; 0.13; 0.11; 0.11 | 1, 4, 16, 56, 62, 105, 261, 413, 486 |
| gpmA-galM | dicA | 1 | 0.30 | 32 |
| gpmM-envC,gpmM-envC-yibQ,gpmM | sfsB, ypdC, arsR | 3 | 0.20; 0.13; 0.16 | 161, 231, 256 |
| gpp | ulaR, iclR, aaeR, ybaQ, cadC, uxuR | 6 | 0.45; 0.42; 0.35; 0.29; 0.10; 0.13 | 17, 26, 91, 102, 126, 175 |
| gpp-rhlB,rhlB | purR, arsR, relE, ybaQ, deoR | 5 | 0.12; 0.36; 0.16; 0.27; 0.15 | 15, 40, 68, 115, 189 |
| gpr | yfeC, gadW, cadC, cbl | 4 | 0.17; 0.17; 0.12; 0.14 | 32, 61, 103, 156 |
| gpsA-secB,cysE-gpsA-secB | yjjQ, matA, exuR, ypdC, arsR, treR, sxy | 7 | 0.39; 0.18; 0.12; 0.25; 0.24; 0.10; 0.12 | 36, 40, 63, 64, 119, 219, 303 |
| gpt-frsA,gpt | allR, yciT, arsR, yeiI, sfsB, aaeR | 6 | 0.16; 0.13; 0.29; 0.15; 0.13; 0.15 | 24, 30, 71, 299, 301, 378 |
| grcA | pdhR, gcvA, sfsB, iclR, lldR | 5 | 0.57; 0.44; 0.22; 0.22; 0.14 | 4, 14, 144, 151, 163 |
| greB-yhgF,greB | ygiT, yheO, dicC, yeiI, uxuR, deoR, ttk | 7 | 0.13; 0.14; 0.22; 0.18; 0.11; 0.11; 0.10 | 19, 49, 156, 235, 261, 299, 487 |
| groL | ttk | 1 | 0.14 | 319 |
| groS-groL,groS-groL-yjeI | glnG, nac, yheO, dicC, ttk | 5 | 0.34; 0.33; 0.10; 0.18; 0.14 | 12, 74, 117, 239, 321 |
| grpE | iclR, ybaQ, yidZ | 3 | 0.39; 0.24; 0.11 | 29, 166, 463 |
| grxA | matA, cbl, galS, melR, ttk, yncC | 6 | 0.20; 0.19; 0.11; 0.16; 0.17; 0.13 | 29, 86, 95, 109, 260, 319 |
| grxD | argP, nsrR, ypdC, yhaJ | 4 | 0.90; 0.47; 0.22; 0.10 | 2, 4, 81, 86 |
| gshB-yqgE-yqgF | betI, yeiI, iclR, deoR | 4 | 0.10; 0.24; 0.22; 0.15 | 39, 153, 164, 177 |
| gsk | racR, ycjW, dicA, yagI, dicC | 5 | 0.10; 0.13; 0.17; 0.10; 0.12 | 49, 63, 165, 237, 463 |
| gspB-gspA | yeiE, aaeR, nrdR, cynR, yncC, lldR, cbl, arsR, argP | 9 | 0.25; 0.37; 0.13; 0.16; 0.18; 0.11; 0.10; 0.14; 0.13 | 42, 81, 113, 142, 186, 246, 264, 308, 354 |
| gspC-gspD-gspE-gspF-gspG-gspH-gspI-gspJ-gspK-gspL-gspM-gspO | yeiE, aaeR, treR, nrdR, cynR, yncC, lldR, cbl, arsR, argP | 10 | 0.25; 0.37; 0.19; 0.13; 0.16; 0.18; 0.11; 0.10; 0.14; 0.13 | 41, 81, 81, 114, 141, 186, 246, 264, 308, 353 |
| gss | hcaR, yncC, pdhR, nac, sfsB, ttk, dicC | 7 | 0.12; 0.55; 0.12; 0.13; 0.11; 0.11; 0.10 | 34, 38, 59, 331, 367, 447, 530 |
| gstA | gadW, ttk, ybaQ | 3 | 0.11; 0.13; 0.12 | 128, 378, 472 |
| gstB | basR, dicA, yheO, allR, iscR, yfeC, gcvA, yidZ, aaeR | 9 | 0.29; 0.34; 0.16; 0.12; 0.14; 0.11; 0.16; 0.17; 0.14 | 3, 19, 41, 59, 78, 90, 103, 265, 405 |
| gtrA-gtrB-gtrS | melR, ttk, yagI, dicC, ybaQ | 5 | 0.30; 0.44; 0.13; 0.20; 0.17 | 25, 29, 165, 222, 328 |
| guaA | cusR, ycjW, gadW, yeiI, treR | 5 | 0.14; 0.12; 0.15; 0.25; 0.10 | 28, 73, 79, 143, 217 |
| guaA-guaB | marA, yjjQ, ybaQ | 3 | 0.14; 0.21; 0.16 | 24, 159, 352 |
| guaC | fimZ, cynR | 2 | 0.33; 0.13 | 62, 206 |
| guaD-ghxQ | yheO, fimZ, gcvA, arsR, aaeR | 5 | 0.16; 0.24; 0.12; 0.20; 0.15 | 43, 118, 155, 160, 386 |
| gudD-gudX-gudP | yeiI | 1 | 0.57 | 25 |
| gyrA | relE, yidZ, lldR, yncC, dicC | 5 | 0.12; 0.25; 0.14; 0.12; 0.12 | 111, 130, 147, 346, 446 |
| hcaE-hcaF-hcaC-hcaB-hcaD | hcaR, gadW, nac, yagI, yeiI | 5 | 1.00; 0.15; 0.19; 0.11; 0.19 | 1, 86, 193, 210, 222 |
| hcaR | hcaR, gadW | 2 | 1.00; 0.15 | 1, 85 |
| hcaR-iroK | sxy, relE, nrdR, argR, aaeR | 5 | 0.26; 0.10; 0.11; 0.14; 0.14 | 93, 139, 151, 271, 420 |
| hcaT | sxy, fimZ, argR, aaeR | 4 | 0.26; 0.17; 0.14; 0.15 | 94, 174, 272, 370 |
| hchA | gcvA, aaeR, dicC, argP | 4 | 0.29; 0.31; 0.16; 0.10 | 33, 120, 295, 430 |
| hcr | deoR, yidZ, yeiI, dicC | 4 | 0.20; 0.23; 0.12; 0.13 | 100, 150, 362, 394 |
| hda | rutR, envY, matA, aaeR | 4 | 0.15; 0.11; 0.10; 0.12 | 70, 134, 144, 479 |
| hda-uraA-upp,uraA-upp,upp | sfsB, cynR, sxy, ttk, nac | 5 | 0.24; 0.17; 0.19; 0.18; 0.13 | 121, 127, 165, 233, 307 |
| hdeD | srlR, fimZ, argR, yafN, cbl, yjjQ | 6 | 0.32; 0.41; 0.18; 0.11; 0.10; 0.11 | 8, 39, 179, 210, 257, 326 |
| hdfR | galS, yhaJ, lldR, argP, cysB | 5 | 0.18; 0.12; 0.19; 0.17; 0.12 | 19, 55, 71, 272, 291 |
| hdhA,uidR-hdhA | nrdR, rutR, yidZ, ulaR, yncC, dicA, aaeR | 7 | 0.19; 0.13; 0.19; 0.12; 0.12; 0.10; 0.13 | 42, 103, 236, 312, 344, 356, 429 |
| helD | ybaQ, cynR, gadW | 3 | 0.91; 0.23; 0.15 | 6, 69, 76 |
| hemA,hemA-prfA-prmC | relE, cynR, gcvA, nac | 4 | 0.11; 0.16; 0.12; 0.17 | 116, 144, 164, 218 |
| hemB | ybiH, cynR, lldR, cusR, dicC, argP, yeiI | 7 | 0.14; 0.33; 0.25; 0.10; 0.30; 0.23; 0.10 | 17, 30, 42, 62, 72, 163, 467 |
| hemE-nfi-yjaG-hupA-yjaH,hemE-nfi-yjaG-hupA | yhjC | 1 | 0.11 | 23 |
| hemF | matA, arsR | 2 | 0.77; 0.11 | 3, 438 |
| hemH | mlrA, yeiE, pdhR, envY, matA, argP, arsR | 7 | 0.12; 0.25; 0.13; 0.18; 0.12; 0.19; 0.12 | 6, 37, 48, 50, 98, 217, 399 |
| hemL | fimZ, exuR, ulaR, argP | 4 | 0.66; 0.11; 0.18; 0.19 | 13, 71, 174, 227 |
| hemN | treR, lldR, arsR, yidZ | 4 | 0.16; 0.16; 0.18; 0.17 | 109, 114, 189, 261 |
| hemY-hemX | sfsB, aaeR, glpR, ypdC, lldR | 5 | 0.56; 0.75; 0.11; 0.13; 0.11 | 14, 15, 16, 241, 254 |
| hemY-hemX-hemD-hemC,hemD-hemC,hemX-hemD-hemC | matA, yidZ, dicC, aaeR | 4 | 0.20; 0.19; 0.14; 0.14 | 27, 241, 353, 411 |
| hflD-mnmA-nudJ | allR, cynR | 2 | 0.15; 0.27 | 32, 48 |
| hfq-hflX-hflK,hfq,hfq-hflX-hflK-hflC,hfq-hflX | hdfR, fabR, treR, uxuR, sfsB | 5 | 1.00; 0.12; 0.21; 0.18; 0.27 | 1, 12, 59, 98, 105 |
| hha-tomB | ygbI, ydjF, argR, dicA, yjjQ, sfsB, aaeR, dicC, yidZ, ttk, argP | 11 | 0.14; 0.12; 0.23; 0.20; 0.23; 0.20; 0.22; 0.17; 0.15; 0.14; 0.12 | 4, 30, 110, 124, 135, 162, 225, 266, 317, 353, 364 |
| higA-higB | yhjC, gcvA, yidZ, sxy, aaeR | 5 | 0.14; 0.27; 0.33; 0.23; 0.20 | 10, 42, 85, 115, 261 |
| hinT-ycfL-lpoB-thiK-nagZ,hinT-ycfL-lpoB-thiK-nagZ-ycfP | nhaR, arsR, argP, tyrR, yjjQ, dicC, yncC, ybaQ, iclR, ulaR | 10 | 0.23; 0.45; 0.48; 0.21; 0.36; 0.31; 0.27; 0.19; 0.16; 0.12 | 3, 24, 28, 33, 47, 67, 104, 260, 285, 304 |
| hisB-hisH-hisA-hisF-hisI | yidZ, uxuR, sfsB | 3 | 0.21; 0.11; 0.15 | 188, 247, 257 |
| hisL-hisG-hisD-hisC-hisB-hisH-hisA-hisF-hisI,hisL | yoeB, ybiH, relE, argR, deoR, aaeR, yeiE, ulaR, iclR | 9 | 1.00; 0.14; 0.18; 0.30; 0.21; 0.28; 0.10; 0.13; 0.16 | 1, 23, 59, 72, 91, 148, 181, 263, 280 |
| hisP-hisM-hisQ-hisJ | glnG, yafN, argR, ulaR, arsR, aaeR | 6 | 0.71; 0.20; 0.28; 0.13; 0.10; 0.10 | 2, 59, 80, 274, 449, 535 |
| hisP-hisM-hisQ-hisJ-argT,hisM-hisQ-hisJ-argT,hisJ-argT,argT | glnG, srlR, ycjW, treR, argR | 5 | 0.38; 0.17; 0.14; 0.16; 0.14 | 9, 17, 53, 108, 269 |
| hisS-ispG-yfgA,yfgA | ompR, yncC, glnG, cpxR, dicA, ttk, uxuR, ulaR | 8 | 0.16; 0.38; 0.12; 0.12; 0.19; 0.24; 0.12; 0.10 | 9, 71, 94, 101, 138, 146, 208, 369 |
| hiuH,hiuH-yedY-yedZ,hiuH-yedY-yedZ-zinT | cusR, deoR, pdhR, basR, yeiE, iclR, dgsA, argR, yidZ, arsR, dicC, ybaQ, aaeR | 13 | 0.56; 0.39; 0.15; 0.11; 0.14; 0.26; 0.11; 0.20; 0.14; 0.13; 0.13; 0.14; 0.13 | 2, 10, 40, 64, 116, 118, 134, 140, 336, 338, 391, 404, 451 |
| hldD-waaF-waaC,hldD-waaF-waaC-waaL | nrdR, argP, yafN | 3 | 0.12; 0.24; 0.10 | 142, 156, 252 |
| hldE,hldE-sibD-sibE,hldE-sibE | ybaQ, nrdR, treR | 3 | 0.66; 0.24; 0.15 | 13, 23, 123 |
| hlyE | lexA, aaeR, kdgR, gadW, yeiI, yafN, argP | 7 | 0.19; 0.75; 0.12; 0.17; 0.20; 0.10; 0.12 | 9, 13, 29, 54, 197, 247, 391 |
| hmp | nsrR, nagC, yeiI, iclR | 4 | 0.38; 0.16; 0.12; 0.11 | 5, 24, 382, 478 |
| hns | yhaJ, fimZ, yafN, nsrR, treR, argP, dicA, ybaQ | 8 | 0.16; 0.35; 0.21; 0.11; 0.13; 0.23; 0.15; 0.19 | 36, 56, 58, 94, 144, 165, 212, 273 |
| hofC-hofB-ppdD | mraZ, sxy, deoR, yjjQ | 4 | 0.37; 0.13; 0.12; 0.12 | 4, 290, 293, 298 |
| hofP-hofO-hofN-hofM | ompR, sxy, yafN, iclR, ttk | 5 | 0.12; 0.44; 0.20; 0.24; 0.10 | 14, 33, 68, 137, 481 |
| hofQ | cadC, dicA, ybaQ | 3 | 0.19; 0.26; 0.16 | 30, 58, 333 |
| hokA | mlrA, allR, yafN, iclR, aaeR, ybaQ, sfsB | 7 | 0.10; 0.13; 0.20; 0.27; 0.23; 0.22; 0.10 | 9, 44, 63, 107, 194, 202, 393 |
| hokB | nagC, sxy | 2 | 0.11; 0.16 | 63, 224 |
| hokD | yhfZ, yidZ | 2 | 0.10; 0.16 | 6, 288 |
| hokE | lexA, nac, ulaR, cynR, lldR, treR | 6 | 0.12; 0.56; 0.29; 0.21; 0.15; 0.12 | 20, 20, 64, 89, 117, 176 |
| holC | ttk | 1 | 0.19 | 213 |
| holD-rimI-yjjG-prfC,holD-rimI-yjjG | cysB, yidZ | 2 | 0.30; 0.14 | 40, 340 |
| holE,holE-yobB-exoX | nac, gcvA, cysB, yeiI | 4 | 0.37; 0.12; 0.16; 0.18 | 62, 173, 179, 254 |
| hpf-ptsN-yhbJ-npr | ycgE, yegW, aaeR, yheO, nac | 5 | 0.10; 0.12; 0.57; 0.11; 0.16 | 11, 24, 25, 94, 235 |
| hpt,hpt-yadG-yadH,hpt-yadG-yadH-yadI | argP, arsR, ybaQ, cynR | 4 | 0.38; 0.20; 0.22; 0.12 | 43, 157, 204, 256 |
| hrpA | yhaJ, ycjZ, melR, yeiI, nac, yidZ | 6 | 0.53; 0.10; 0.19; 0.12; 0.10; 0.12 | 6, 32, 80, 356, 406, 418 |
| hrpB | yegW, relE, ybaQ | 3 | 0.13; 0.13; 0.13 | 12, 93, 440 |
| hscA,iscX-fdx-hscA | ttk, allR, yagI, cysB, iclR | 5 | 0.45; 0.13; 0.13; 0.16; 0.17 | 28, 52, 177, 196, 270 |
| hscA-hscB-iscA | basR, lldR, ybaQ, cbl, argP, iclR | 6 | 0.13; 0.25; 0.38; 0.18; 0.17; 0.14 | 36, 40, 57, 95, 258, 362 |
| hscB-iscA-iscU-iscS-iscR,iscA-iscU-iscS-iscR | lldR, melR, sfsB, aaeR | 4 | 0.18; 0.16; 0.13; 0.13 | 81, 117, 302, 453 |
| hscC | gcvA, treR, melR | 3 | 0.31; 0.18; 0.10 | 25, 95, 239 |
| hscC-rihA,rihA | sxy | 1 | 0.24 | 105 |
| hsdS-hsdM,hsdM | aaeR | 1 | 0.10 | 530 |
| hsdS-hsdM-hsdR,hsdR | trpR, deoR, lldR, nac | 4 | 0.12; 0.17; 0.10; 0.12 | 26, 141, 285, 356 |
| hslJ | yjjQ, aaeR, ypdC, dicA | 4 | 0.29; 0.27; 0.11; 0.11 | 84, 153, 297, 338 |
| hslJ-ldhA,ldhA | yheO, tyrR, yagI, fimZ, argR, nac | 6 | 0.65; 0.34; 0.21; 0.12; 0.14; 0.10 | 3, 5, 64, 277, 278, 397 |
| hslO | iclR, ybaQ | 2 | 0.14; 0.12 | 352, 491 |
| hslR-hslO | relE, ulaR, yagI, ttk, ybaQ | 5 | 0.23; 0.15; 0.11; 0.17; 0.12 | 37, 229, 230, 240, 492 |
| hslU | yhaJ, relE, yidZ, argP, sfsB | 5 | 0.21; 0.15; 0.16; 0.16; 0.12 | 19, 72, 280, 284, 316 |
| hslV-ftsN,hslU-hslV-ftsN | yjjQ, dicA | 2 | 0.45; 0.12 | 26, 281 |
| hspQ | ygiT, relE, nac, sfsB, deoR, ulaR, ybaQ | 7 | 0.11; 0.11; 0.21; 0.15; 0.12; 0.12; 0.12 | 38, 114, 171, 253, 269, 309, 448 |
| hspQ-rlmI,rlmI | ydjF, yfeC, treR, arsR, rutR, yidZ, lldR | 7 | 0.11; 0.13; 0.16; 0.24; 0.11; 0.20; 0.10 | 43, 66, 110, 116, 142, 212, 275 |
| hsrA-yieP | tyrR, gadW, cysB | 3 | 0.20; 0.12; 0.11 | 35, 121, 320 |
| htpG,htpG-adk | fimZ, ypdC, melR, yeiI | 4 | 0.29; 0.17; 0.11; 0.12 | 83, 144, 211, 395 |
| htpX | yeiE, nac, aaeR, ulaR, arsR, yeiI | 6 | 0.13; 0.15; 0.20; 0.12; 0.10; 0.10 | 125, 251, 259, 306, 453, 454 |
| htrE-yadV | dicA, argP, argR, dicC, ulaR | 5 | 0.29; 0.28; 0.21; 0.23; 0.11 | 37, 108, 130, 143, 348 |
| hupA,hupA-yjaH | cusR, exuR, fimZ, argP, rutR, yidZ, nac, ttk | 8 | 0.14; 0.13; 0.32; 0.28; 0.13; 0.23; 0.16; 0.12 | 26, 56, 65, 102, 112, 153, 239, 401 |
| hupB,hupB-ppiD | sfsB, ybaQ, cbl, yidZ, ttk | 5 | 0.56; 0.32; 0.19; 0.23; 0.15 | 15, 82, 93, 158, 291 |
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | iscR, iclR, dgsA, cbl, allR, lldR | 6 | 0.25; 0.37; 0.14; 0.22; 0.10; 0.12 | 26, 36, 59, 62, 88, 213 |
| hyaD-hyaE | ybaQ, lldR | 2 | 0.23; 0.12 | 192, 206 |
| hybB-hybA-hybO-yghW,yghW | modE, deoR, yncC, yafN, nac, ttk | 6 | 1.00; 0.17; 0.21; 0.11; 0.14; 0.11 | 1, 144, 147, 212, 298, 434 |
| hybG-hybF-hybE-hybD | pdhR, rutR, dicC, ybaQ | 4 | 0.14; 0.14; 0.14; 0.16 | 44, 91, 341, 350 |
| hybG-hybF-hybE-hybD-hybC | ybaQ, dicC, cbl, dgsA, ycjW, melR, iclR, fimZ | 8 | 1.00; 0.55; 0.33; 0.15; 0.14; 0.21; 0.19; 0.11 | 1, 10, 21, 47, 54, 60, 215, 312 |
| hybG-hybF-hybE-hybD-hybC-hybB-hybA-hybO,hybB-hybA-hybO,hybA-hybO | iscR, modE, deoR, argP, yncC, fimZ | 6 | 0.54; 0.11; 0.17; 0.22; 0.16; 0.10 | 3, 10, 143, 180, 228, 325 |
| hycI | ycjW, sxy | 2 | 0.15; 0.22 | 46, 130 |
| hycI-hycH-hycG-hycF-hycE-hycD-hycC-hycB-hycA | fimZ, deoR, aaeR, ybaQ | 4 | 0.61; 0.14; 0.19; 0.18 | 15, 203, 279, 300 |
| hyfA-hyfB-hyfC-hyfD-hyfE-hyfF-hyfG-hyfH-hyfI-hyfJ-hyfR-focB | gadW, ttk, yidZ | 3 | 0.15; 0.21; 0.14 | 78, 172, 346 |
| hypA-hypB-hypC-hypD-hypE-fhlA,hypA-hypB-hypC-hypD-hypE | fimZ, deoR, aaeR | 3 | 0.61; 0.14; 0.19 | 16, 202, 279 |
| hypB-hypC-hypD-hypE-fhlA,hypB-hypC-hypD-hypE | fimZ, yidZ, ybaQ, aaeR | 4 | 0.61; 0.53; 0.35; 0.19 | 16, 22, 68, 281 |
| hypE | asnC | 1 | 0.13 | 11 |
| hypF-hydN | hdfR, yhfR, yeiI, glnG, dgsA, nac | 6 | 0.13; 0.13; 0.54; 0.12; 0.12; 0.12 | 13, 27, 29, 102, 104, 363 |
| hyuA | lldR, ybaQ, aaeR | 3 | 0.22; 0.15; 0.10 | 55, 365, 548 |
| iaaA-gsiA,iaaA-gsiA-gsiB-gsiC-gsiD | cbl, galR, ycjW, argR, uxuR, ybaQ | 6 | 0.44; 0.11; 0.17; 0.16; 0.11; 0.11 | 5, 19, 37, 206, 246, 523 |
| iadA-yjiG-yjiH | cusR, relE, glnG, iscR, dgsA, rutR, melR, yidZ | 8 | 0.38; 0.19; 0.18; 0.16; 0.14; 0.14; 0.11; 0.14 | 9, 46, 48, 50, 68, 81, 216, 363 |
| iap | cbl, dicC, yjjQ, treR, nrdR, arsR, cysB, fimZ, ypdC, yidZ | 10 | 0.39; 0.42; 0.38; 0.15; 0.11; 0.18; 0.14; 0.11; 0.10; 0.12 | 15, 28, 40, 127, 183, 203, 228, 307, 332, 415 |
| ibaG-mlaB-mlaC-mlaD-mlaE | treR, dicA | 2 | 0.26; 0.26 | 35, 62 |
| ibaG-mlaB-mlaC-mlaD-mlaE-mlaF,mlaB-mlaC-mlaD-mlaE-mlaF,mlaC-mlaD-mlaE-mlaF | basR, rutR, ulaR | 3 | 0.28; 0.25; 0.19 | 5, 23, 154 |
| ibpA,ibpB-ibpA | marA, ybaQ, melR, sxy, dicC | 5 | 1.00; 0.76; 0.28; 0.15; 0.11 | 1, 9, 28, 251, 476 |
| ibpB | relE, ttk, cynR, dicC | 4 | 0.50; 0.35; 0.12; 0.18 | 6, 66, 251, 256 |
| ibsA | ttk, sxy | 2 | 0.21; 0.16 | 176, 237 |
| ibsB | yddM, nsrR, sxy, ttk | 4 | 0.15; 0.13; 0.17; 0.17 | 27, 52, 213, 245 |
| ibsD | aaeR, cbl, ttk, sfsB | 4 | 0.49; 0.10; 0.14; 0.10 | 33, 261, 316, 401 |
| ibsE | cbl, dicC, ttk, sfsB | 4 | 0.10; 0.17; 0.15; 0.10 | 263, 285, 306, 402 |
| icd | aaeR, gcvA, melR, yafN | 4 | 0.26; 0.12; 0.12; 0.11 | 162, 168, 195, 229 |
| icdC | betI, nsrR, dicA, glnG, nac, dicC, arsR | 7 | 0.11; 0.15; 0.28; 0.10; 0.14; 0.14; 0.12 | 31, 37, 43, 132, 292, 338, 383 |
| iclR | iclR, dicC, fimZ, sxy, yidZ | 5 | 0.89; 0.58; 0.25; 0.17; 0.14 | 3, 8, 108, 198, 353 |
| idi | yhjC, iclR, ulaR, cynR | 4 | 0.16; 0.27; 0.21; 0.16 | 6, 99, 128, 151 |
| idnK | yjjQ, dicC, argR, sfsB | 4 | 0.14; 0.15; 0.11; 0.11 | 263, 319, 338, 355 |
| idnR | iscR, sfsB | 2 | 0.14; 0.18 | 72, 197 |
| idnR-idnT-idnO-idnD | betI, yjjQ, argR | 3 | 0.14; 0.14; 0.11 | 9, 264, 337 |
| ihfA-pheT-pheS-pheM,pheM | trpR, fimZ, yafN, tyrR, cadC, cbl | 6 | 0.14; 0.55; 0.23; 0.17; 0.11; 0.13 | 19, 21, 43, 60, 112, 176 |
| ihfA-pheT-pheS-pheM-rplT-rpmI-infC-thrS,pheM-rplT-rpmI-infC-thrS,rplT-rpmI-infC-thrS,thrS,infC-thrS | nac, iclR, argP, argR, deoR, aaeR | 6 | 0.53; 0.27; 0.28; 0.13; 0.11; 0.15 | 26, 102, 113, 297, 323, 360 |
| ihfB | sfsB, argR | 2 | 0.20; 0.16 | 167, 202 |
| ileS-lspA,ileS-lspA-fkpB-ispH,ileS,ileS-lspA-fkpB | iclR, dicC | 2 | 0.28; 0.10 | 85, 519 |
| ileT-alaT | ycjW, ttk, treR, gadW, dicC, sxy, sfsB | 7 | 0.18; 0.44; 0.23; 0.11; 0.22; 0.17; 0.16 | 28, 31, 47, 147, 163, 216, 227 |
| ileU | ycjW, ttk, treR, gadW, dicC, sxy, sfsB | 7 | 0.18; 0.44; 0.23; 0.11; 0.22; 0.17; 0.16 | 26, 35, 44, 150, 160, 220, 231 |
| ileV-alaV,ileV | ycjW, ttk, treR, gadW, dicC, sxy, sfsB | 7 | 0.18; 0.44; 0.23; 0.11; 0.22; 0.17; 0.16 | 28, 31, 47, 147, 163, 216, 227 |
| ileX | yidZ, yncC, ybaQ, uxuR, ttk | 5 | 0.91; 0.77; 0.46; 0.17; 0.17 | 2, 16, 27, 108, 255 |
| ileY | zur, iclR, cadC, yncC, yeiI, arsR, yjjQ, cynR, deoR, aaeR | 10 | 0.10; 0.38; 0.16; 0.24; 0.22; 0.19; 0.13; 0.11; 0.12; 0.15 | 22, 32, 57, 127, 181, 182, 281, 285, 286, 373 |
| ilvA | ybaQ, yidZ, fimZ, dicA | 4 | 0.46; 0.44; 0.25; 0.18 | 28, 30, 111, 145 |
| ilvC | deoR | 1 | 0.21 | 89 |
| ilvE-ilvD,ilvE-ilvD-ilvA | dgsA, ttk, rutR, yheO, fimZ, yidZ, nac, ybaQ | 8 | 0.27; 0.48; 0.15; 0.13; 0.29; 0.20; 0.14; 0.14 | 13, 20, 64, 77, 82, 215, 299, 392 |
| ilvI-ilvH,ilvI-ilvH-fruR | galS, yeiI, ypdC, gadW | 4 | 0.12; 0.26; 0.17; 0.11 | 78, 135, 154, 155 |
| ilvL-ilvM-ilvE-ilvD-ilvA-ilvG-ilvX,ilvL,ilvL-ilvM-ilvE-ilvG-ilvX | pdhR, iclR, yeiE, aaeR, dicC | 5 | 0.16; 0.34; 0.23; 0.39; 0.15 | 33, 42, 46, 61, 320 |
| ilvY | deoR, ybaQ | 2 | 0.21; 0.16 | 90, 342 |
| inaA | yciT, yjjQ, ybaQ | 3 | 0.11; 0.25; 0.13 | 41, 108, 422 |
| inaA-glpQ-glpT,glpQ-glpT | glpR, yfeC, deoR, yheO, dicC, ulaR, aaeR | 7 | 0.51; 0.24; 0.25; 0.10; 0.24; 0.20; 0.12 | 3, 13, 48, 113, 116, 140, 472 |
| infB | gcvA, sfsB, ybaQ | 3 | 0.80; 0.30; 0.25 | 5, 97, 157 |
| infB-nusA | betI, ulaR, envY, dicA, yeiI, yeiE, sfsB, yagI, argR, aaeR | 10 | 0.14; 0.30; 0.16; 0.25; 0.35; 0.13; 0.19; 0.13; 0.18; 0.23 | 8, 57, 64, 71, 81, 121, 174, 174, 177, 200 |
| infB-nusA-rimP,nusA-rimP | nac, relE, argR, cysB, ulaR, dicA, sfsB, yeiI | 8 | 0.51; 0.27; 0.41; 0.27; 0.30; 0.25; 0.19; 0.14 | 29, 29, 45, 50, 58, 72, 173, 318 |
| insA-1-rpsT,rpsT | tyrR, gcvA, argP, nrdR | 4 | 0.19; 0.15; 0.25; 0.11 | 47, 122, 148, 173 |
| insA-7 | iclR, fimZ, cynR, dicA, ulaR, arsR | 6 | 0.64; 0.35; 0.22; 0.18; 0.17; 0.12 | 5, 51, 76, 151, 200, 386 |
| insA9 | racR, iclR, cynR | 3 | 0.10; 0.20; 0.11 | 46, 193, 274 |
| insB-1-insA-1-insAB1 | yhfZ, iscR, cbl, gadW, fimZ, yncC | 6 | 0.14; 0.21; 0.23; 0.10; 0.11; 0.11 | 2, 32, 50, 169, 313, 376 |
| insB-3-insA-3-insAB3 | rutR, nrdR, argR | 3 | 0.25; 0.11; 0.14 | 22, 179, 249 |
| insB-4-insA-4-insAB4 | ygiT, exuR, yidZ | 3 | 0.15; 0.22; 0.33 | 9, 22, 80 |
| insB-5-insA-5-insAB5 | gadW, ulaR, dgsA, dicC, argP | 5 | 0.24; 0.40; 0.17; 0.21; 0.13 | 21, 25, 34, 202, 335 |
| insB9 | iclR, yeiI, uxuR | 3 | 0.20; 0.18; 0.10 | 194, 245, 291 |
| insC-1-insD-1 | dgsA, iscR, aaeR, yncC, yidZ | 5 | 0.15; 0.10; 0.23; 0.14; 0.12 | 42, 139, 198, 280, 421 |
| insC-1-insD-1-insCD1 | dgsA, iscR, aaeR, yncC, yidZ | 5 | 0.15; 0.10; 0.23; 0.14; 0.12 | 42, 139, 198, 280, 421 |
| insC-5-insD-5-yqiH-yqiI-insCD5 | ycjZ, iscR, argP, nac | 4 | 0.11; 0.18; 0.25; 0.10 | 27, 40, 145, 398 |
| insC-6-insD-6-insCD6 | lldR, treR, sfsB, aaeR, ypdC, dicC | 6 | 0.16; 0.12; 0.13; 0.17; 0.11; 0.14 | 113, 177, 296, 307, 316, 370 |
| insD-2-insC-2-insCD2 | yeiE, yjjQ, melR, yagI, arsR | 5 | 0.12; 0.18; 0.12; 0.12; 0.10 | 146, 191, 192, 192, 446 |
| insE-1-insF-1 | deoR | 1 | 0.16 | 154 |
| insE-3-insF-3-emrE | yeaM, deoR, sfsB, dicC | 4 | 0.17; 0.16; 0.16; 0.12 | 5, 154, 246, 421 |
| insE-3-insF-3-insEF3 | yeaM, deoR, sfsB, dicC | 4 | 0.17; 0.16; 0.16; 0.12 | 5, 154, 246, 421 |
| insE-5-insF-5-insEF5 | yegW, deoR, iclR, argR, dicC | 5 | 0.20; 0.16; 0.19; 0.15; 0.18 | 4, 154, 221, 237, 264 |
| insF-2-insE-2-insEF2 | gcvA, yagI, deoR, dicA, yidZ | 5 | 0.55; 0.18; 0.16; 0.16; 0.20 | 6, 108, 149, 180, 209 |
| insF-4-insE-4-insEF4 | nsrR, nac, deoR, ttk, cysB | 5 | 0.29; 0.25; 0.16; 0.17; 0.13 | 8, 138, 149, 253, 261 |
| insG | exuR, deoR, yafN, galS, lldR, nac, arsR | 7 | 0.27; 0.33; 0.23; 0.11; 0.10; 0.14; 0.10 | 13, 21, 40, 85, 281, 291, 452 |
| insH-1 | exuR, yagI, ybaQ | 3 | 0.11; 0.19; 0.13 | 91, 94, 428 |
| insH-10 | gadW, yagI, aaeR, yafN, dicA, fimZ | 6 | 0.17; 0.19; 0.22; 0.10; 0.13; 0.10 | 65, 94, 223, 254, 266, 323 |
| insH-11 | dicC, yagI, aaeR, iclR, sxy | 5 | 0.32; 0.19; 0.26; 0.17; 0.13 | 58, 94, 168, 266, 297 |
| insH-2-nmpC,insH-2 | ypdC, yhaJ, yagI, cadC, yheO, cynR, ulaR, ttk | 8 | 0.36; 0.11; 0.19; 0.10; 0.10; 0.15; 0.18; 0.12 | 32, 68, 94, 115, 124, 172, 181, 404 |
| insH-4,insH-4-ynaJ | yagI, matA, iclR, dicC, ybaQ | 5 | 0.19; 0.11; 0.14; 0.13; 0.15 | 99, 120, 356, 378, 379 |
| insH-5 | cynR, yidZ | 2 | 0.11; 0.14 | 275, 344 |
| insH-6 | ygbI, yncC, yafN, iscR, uxuR | 5 | 0.16; 0.58; 0.26; 0.11; 0.14 | 3, 29, 34, 117, 157 |
| insH-7 | sfsB, cadC, glnG, yagI, argR, dicC, argP, yeiI | 8 | 0.53; 0.21; 0.22; 0.19; 0.24; 0.21; 0.13; 0.10 | 21, 24, 24, 94, 99, 193, 345, 444 |
| insH-8 | treR, ycjW, yagI, iscR | 4 | 0.27; 0.11; 0.19; 0.11 | 28, 82, 94, 124 |
| insH-9 | iscR, deoR, yagI, ybaQ | 4 | 0.19; 0.26; 0.19; 0.15 | 34, 45, 100, 379 |
| insH21 | deoR, yjjQ, yagI, treR, cysB, ybaQ, iclR, aaeR | 8 | 0.44; 0.56; 0.19; 0.11; 0.15; 0.15; 0.11; 0.11 | 7, 19, 100, 182, 216, 379, 466, 502 |
| insI-1 | ybhD, yncC, melR, yagI | 4 | 0.13; 0.37; 0.12; 0.12 | 33, 75, 192, 192 |
| insI-1-insN-eyeA | ybaQ, ybhD, arsR | 3 | 0.58; 0.13; 0.23 | 20, 31, 124 |
| insI-2 | yncC, yjjQ, melR, yagI | 4 | 0.37; 0.18; 0.12; 0.12 | 74, 191, 192, 192 |
| insI-3 | melR, yagI, yncC, ypdC, ttk | 5 | 0.16; 0.12; 0.17; 0.12; 0.12 | 123, 194, 216, 249, 399 |
| insJ | mlrA, allR, sfsB, yafN, iclR, aaeR, ybaQ | 7 | 0.10; 0.13; 0.38; 0.20; 0.27; 0.23; 0.22 | 7, 45, 58, 64, 104, 192, 200 |
| insJK | mlrA, allR, sfsB, yafN, iclR, aaeR, ybaQ | 7 | 0.10; 0.13; 0.38; 0.20; 0.27; 0.23; 0.22 | 7, 45, 58, 64, 104, 192, 200 |
| insK | cpxR, iclR, argP, sfsB | 4 | 0.14; 0.27; 0.25; 0.10 | 77, 106, 149, 392 |
| insL-1 | yhfR, arsR, ttk, melR, treR | 5 | 0.13; 0.38; 0.24; 0.14; 0.12 | 21, 35, 145, 150, 171 |
| insL-2 | lexA, yhfR, lldR, treR | 4 | 0.12; 0.13; 0.15; 0.12 | 20, 22, 119, 175 |
| insL-3 | yhfR, treR, yddM, glnG, cysB, yjjQ | 6 | 0.13; 0.26; 0.12; 0.14; 0.12; 0.10 | 20, 32, 55, 77, 310, 354 |
| insO | pdhR, yncC, sxy, yeiI, gcvA, cbl, ybaQ | 7 | 0.12; 0.27; 0.19; 0.22; 0.11; 0.11; 0.18 | 61, 112, 174, 176, 195, 208, 294 |
| insQ | dgsA, ydjF, nac, ypdC, sfsB | 5 | 0.17; 0.11; 0.19; 0.13; 0.12 | 35, 50, 195, 242, 334 |
| insZ | uxuR, ybaQ, lldR, yjjQ | 4 | 0.30; 0.42; 0.15; 0.11 | 30, 41, 133, 346 |
| intA | aaeR, cadC, argP, relE, ulaR | 5 | 0.88; 0.35; 0.38; 0.14; 0.15 | 4, 7, 45, 88, 235 |
| intB | betI, deoR, rutR, dicC | 4 | 0.13; 0.22; 0.13; 0.14 | 13, 73, 113, 342 |
| intD | arsR, yjjQ, yeiI, aaeR, ybaQ | 5 | 0.23; 0.11; 0.10; 0.12; 0.11 | 127, 322, 459, 461, 517 |
| intE-xisE-ymfH | yheO, yncC, lexA, trpR, ulaR, nrdR, ypdC, iclR, dicC | 9 | 0.29; 0.84; 0.12; 0.10; 0.28; 0.11; 0.11; 0.11; 0.10 | 12, 13, 24, 37, 67, 153, 325, 477, 517 |
| intF | iscR, yciT, fabR, ybhD, relE, tyrR, glnG, yafN, argR, sxy, yagI, gcvA, iclR, dicA, yidZ | 15 | 0.41; 0.15; 0.10; 0.14; 0.12; 0.12; 0.11; 0.14; 0.20; 0.18; 0.12; 0.10; 0.18; 0.12; 0.15 | 6, 15, 17, 25, 109, 114, 127, 132, 143, 184, 189, 229, 257, 299, 322 |
| intG | galR, ybiH, nac, matA, gcvA, gadW, melR, yeiE, deoR | 9 | 0.13; 0.15; 0.43; 0.14; 0.15; 0.12; 0.16; 0.12; 0.12 | 12, 12, 36, 64, 116, 118, 128, 148, 270 |
| intK-ydfX-dicC | dicA, dicC, tyrR, ybaQ | 4 | 1.00; 1.00; 0.13; 0.17 | 1, 2, 106, 316 |
| intR-ydaQ-ydaC-ralR-recT-recE | yeiE, rutR, dicA | 3 | 0.22; 0.13; 0.11 | 57, 114, 333 |
| intS-gtrA,intS-gtrA-gtrB,intS | ycjW, fimZ, argP | 3 | 0.12; 0.14; 0.16 | 76, 225, 275 |
| intZ | yagI | 1 | 0.10 | 247 |
| ipeX | envY, argP, deoR | 3 | 0.15; 0.17; 0.12 | 69, 260, 276 |
| iraD-idlP | cynR, kdgR, yjjQ, dgsA, matA, yfeC, dicC, nac, ulaR, yidZ | 10 | 0.40; 0.10; 0.34; 0.12; 0.12; 0.10; 0.24; 0.14; 0.12; 0.11 | 12, 39, 56, 95, 114, 114, 131, 287, 317, 462 |
| iraD-ytiD-idlP | cynR, kdgR, yjjQ, dgsA, yfeC, dicC, cbl, nac, ulaR | 9 | 0.40; 0.10; 0.34; 0.12; 0.10; 0.24; 0.11; 0.14; 0.12 | 13, 37, 58, 97, 113, 129, 236, 287, 318 |
| iraM | cynR, nrdR, dgsA, yafN, yjjQ, dicC | 6 | 0.28; 0.18; 0.12; 0.13; 0.16; 0.13 | 41, 45, 103, 157, 217, 411 |
| iraP-phoA,iraP | nrdR, yfeC, allR, argP, nac, yncC, cynR, yjjQ, dicA, cysB, ybaQ | 11 | 0.27; 0.20; 0.12; 0.29; 0.27; 0.21; 0.15; 0.12; 0.11; 0.11; 0.12 | 17, 26, 64, 96, 121, 149, 168, 300, 323, 339, 481 |
| IS129 | sfsB, sxy, arsR, aaeR, dicC | 5 | 0.34; 0.26; 0.16; 0.14; 0.12 | 76, 97, 248, 396, 461 |
| iscA-iscU-iscS | dicA, ybaQ, aaeR | 3 | 0.15; 0.18; 0.13 | 216, 283, 454 |
| iscA-iscU-iscS-iscR-trmJ,trmJ,iscR-trmJ | iclR, cysB, yeiI | 3 | 0.16; 0.11; 0.13 | 312, 344, 350 |
| iscX-fdx-hscA-hscB | basR, ybaQ, rutR, iclR | 4 | 0.13; 0.38; 0.12; 0.14 | 37, 58, 125, 361 |
| ispB | nac, yidZ, ybaQ, arsR | 4 | 0.11; 0.12; 0.13; 0.10 | 370, 409, 435, 450 |
| ispF-ispD | cpxR, lldR, nac, glnG, ybaQ | 5 | 0.27; 0.31; 0.28; 0.10; 0.18 | 15, 19, 112, 137, 304 |
| ispU-cdsA-rseP,ispU-cdsA | cysB, sfsB, cbl, yidZ | 4 | 0.77; 0.20; 0.12; 0.14 | 3, 157, 191, 331 |
| isrC,flu-isrC | ybaQ, ycjW, uxuR, yeiE, nrdR, yafN, yidZ | 7 | 0.47; 0.16; 0.19; 0.16; 0.13; 0.12; 0.12 | 26, 41, 84, 93, 119, 174, 404 |
| istR | lexA, cadC, yeiE, ybaQ, ycjW, yafN, argR, ttk | 8 | 0.19; 0.25; 0.34; 0.39; 0.11; 0.11; 0.15; 0.14 | 6, 18, 19, 52, 93, 206, 229, 324 |
| ivy | lldR, yegW, ulaR, ypdC, nac | 5 | 0.34; 0.11; 0.15; 0.13; 0.14 | 13, 25, 224, 245, 301 |
| katE | gcvA, arsR, yagI, iclR | 4 | 0.46; 0.24; 0.13; 0.18 | 10, 118, 156, 254 |
| katG,katG-yijE | arsR, cysB, ybaQ | 3 | 0.26; 0.16; 0.16 | 88, 185, 343 |
| kbaZ-agaV-agaW-agaA | agaR, iclR, ttk, uxuR, ypdC, yafN, sfsB, dicC | 8 | 1.00; 0.57; 0.34; 0.12; 0.13; 0.10; 0.13; 0.13 | 2, 11, 68, 224, 225, 237, 303, 401 |
| kch | glnG, argR, gcvA, yafN, yeiI | 5 | 0.13; 0.24; 0.13; 0.12; 0.11 | 85, 103, 153, 172, 418 |
| kdgK | kdgR, basR, rutR, yagI, uxuR, tyrR, yncC, deoR | 8 | 0.39; 0.15; 0.15; 0.19; 0.19; 0.10; 0.16; 0.10 | 3, 30, 76, 82, 92, 176, 239, 339 |
| kdgR | kdgR, ydjF, ttk, cadC, aaeR, yeiI | 6 | 0.18; 0.26; 0.43; 0.12; 0.30; 0.11 | 7, 7, 38, 100, 134, 399 |
| kdgT | kdgR, dgsA, cusR, ybaQ, treR, yhaJ, yagI, yjjQ, arsR | 9 | 1.00; 0.21; 0.13; 0.38; 0.20; 0.10; 0.10; 0.11; 0.11 | 1, 21, 32, 59, 62, 78, 242, 323, 421 |
| kdpC-kdpB-kdpA-kdpF | dgsA, dicA, argP | 3 | 0.38; 0.21; 0.11 | 7, 110, 423 |
| kdpE | yciT, yagI, rutR, treR, yeiI, lldR, aaeR | 7 | 0.11; 0.17; 0.12; 0.13; 0.23; 0.10; 0.10 | 53, 109, 128, 148, 168, 276, 527 |
| kdpE-kdpD,kdpD | yncC, uxuR, nac | 3 | 0.64; 0.13; 0.17 | 24, 178, 215 |
| kdsA,kdsA-rdlA | asnC, marA, dicC | 3 | 0.13; 0.14; 0.14 | 12, 25, 365 |
| kdsC-lptC,kdsC-lptC-lptA-lptB | gcvA, arsR, ybaQ | 3 | 0.10; 0.11; 0.11 | 231, 431, 528 |
| kduD | yciT, nsrR, glnG, cadC, deoR, sfsB, nac | 7 | 0.12; 0.14; 0.14; 0.12; 0.12; 0.12; 0.11 | 35, 43, 75, 96, 271, 320, 378 |
| kduI | kdgR, ybiH, yeiI, cadC, uxuR, cynR, aaeR, iclR | 8 | 0.52; 0.26; 0.49; 0.16; 0.15; 0.14; 0.21; 0.14 | 2, 3, 39, 50, 137, 195, 242, 375 |
| kefB-kefG-yheV,kefG | matA, melR, yidZ, cysB, dicA, cynR, sfsB | 7 | 0.13; 0.11; 0.19; 0.13; 0.12; 0.10; 0.11 | 80, 207, 223, 265, 282, 297, 380 |
| kefF-kefC,kefF-kefC-folA | mraZ, cynR, arsR, yncC, fimZ | 5 | 0.11; 0.17; 0.22; 0.16; 0.12 | 123, 135, 137, 222, 280 |
| kgtP | gcvA, lldR | 2 | 0.39; 0.14 | 16, 158 |
| kilR-ydaE | dicC, yncC, ttk, aaeR | 4 | 0.31; 0.36; 0.17; 0.17 | 65, 76, 241, 325 |
| kptA | cusR, relE, glnG, iscR, dgsA, rutR, melR, yidZ | 8 | 0.38; 0.19; 0.18; 0.16; 0.14; 0.14; 0.11; 0.14 | 10, 45, 49, 50, 67, 81, 215, 363 |
| kup | allR, mraZ, argP, dicC | 4 | 0.13; 0.15; 0.18; 0.14 | 53, 53, 236, 366 |
| lacA-lacY | sfsB, gadW, melR, sxy, yjjQ, arsR | 6 | 0.54; 0.12; 0.13; 0.18; 0.14; 0.13 | 19, 108, 167, 189, 250, 327 |
| lacI | arsR, aaeR, yidZ, deoR, ybaQ | 5 | 0.30; 0.27; 0.23; 0.14; 0.19 | 70, 160, 164, 221, 275 |
| lacI-mhpR | mhpR, ybaQ, rutR, yhaJ, dicA | 5 | 1.00; 0.94; 0.31; 0.19; 0.27 | 1, 5, 8, 24, 45 |
| lacY-lacZ,lacA-lacY-lacZ | lacI, treR, mraZ, yidZ, sxy, deoR | 6 | 1.00; 0.16; 0.11; 0.28; 0.13; 0.11 | 1, 105, 113, 115, 270, 311 |
| lafU | yeiI, aaeR, gcvA, sxy | 4 | 0.30; 0.29; 0.12; 0.13 | 104, 140, 167, 287 |
| ldcC | yhaJ, cysB | 2 | 0.10; 0.19 | 88, 144 |
| ldrA | gcvA, ulaR | 2 | 0.29; 0.11 | 29, 336 |
| ldrB | gcvA, trpR, argP | 3 | 0.29; 0.10; 0.22 | 28, 36, 176 |
| ldrC | ulaR, gcvA, argP, ttk, yncC, yidZ | 6 | 0.45; 0.29; 0.20; 0.14; 0.12; 0.12 | 18, 29, 207, 330, 342, 426 |
| ldrD | sxy | 1 | 0.20 | 151 |
| ldtA | dicC, hcaR, dicA, gcvA, yafN, ybaQ | 6 | 0.65; 0.14; 0.30; 0.14; 0.13; 0.12 | 4, 24, 31, 131, 158, 479 |
| ldtA-cobT-cobS-cobU,cobT-cobS-cobU,cobS-cobU | racR, argR, ybaQ, argP | 4 | 0.10; 0.38; 0.23; 0.11 | 47, 49, 195, 420 |
| ldtB | lldR, allR, nsrR, rutR, treR, yeiI, cysB, argR, arsR | 9 | 0.41; 0.10; 0.10; 0.10; 0.12; 0.22; 0.16; 0.11; 0.11 | 9, 102, 114, 147, 167, 171, 183, 336, 427 |
| ldtC | iscR, yheO, fimZ, cadC, yidZ, argP | 6 | 0.64; 0.14; 0.26; 0.11; 0.15; 0.14 | 2, 56, 100, 114, 303, 323 |
| ldtD-ycbK-ycbL,ldtD | glnG, aaeR, yafN | 3 | 0.14; 0.30; 0.13 | 83, 130, 167 |
| ldtE | cadC, iclR, rutR, argP, yidZ | 5 | 0.13; 0.28; 0.14; 0.24; 0.11 | 83, 92, 94, 155, 454 |
| lepA,lepB-lepA | pdhR, yjjQ, ypdC | 3 | 0.18; 0.15; 0.12 | 25, 248, 262 |
| leuB-leuA | mngR, marA, dicA, uxuR | 4 | 0.11; 0.15; 0.17; 0.12 | 5, 18, 168, 204 |
| leuD-leuC-leuB-leuA-leuL,leuL | mngR, marA, ybhD, iscR, ypdC, dicA, uxuR, ulaR | 8 | 0.11; 0.15; 0.16; 0.15; 0.18; 0.17; 0.12; 0.14 | 4, 17, 17, 64, 139, 167, 205, 247 |
| leuE | argR | 1 | 0.14 | 255 |
| leuO | mngR, ybhD, iscR, ypdC, arsR, dicA, cynR, ulaR | 8 | 0.11; 0.16; 0.15; 0.18; 0.19; 0.16; 0.14; 0.14 | 3, 16, 63, 140, 180, 194, 196, 246 |
| leuU | trpR, lldR, gcvA, treR, argP, iclR | 6 | 0.13; 0.15; 0.12; 0.12; 0.20; 0.16 | 22, 115, 156, 160, 213, 283 |
| leuU-secG,secG | argP, iclR | 2 | 0.20; 0.16 | 214, 283 |
| leuU-secG-glmM,glmM | ybaQ, uxuR, argR | 3 | 0.41; 0.13; 0.10 | 46, 193, 363 |
| leuV | yidZ, ybhD, cbl | 3 | 0.53; 0.11; 0.17 | 21, 42, 108 |
| leuV-leuP-leuQ | yidZ, ybhD, cbl, ttk, ybaQ, sxy | 6 | 0.53; 0.11; 0.17; 0.26; 0.22; 0.11 | 20, 41, 107, 125, 209, 345 |
| leuX | deoR, treR | 2 | 0.22; 0.11 | 72, 204 |
| leuZ-cysT-glyW-pgsA,pgsA | arsR, deoR, yncC, yidZ | 4 | 0.37; 0.23; 0.20; 0.12 | 39, 66, 171, 417 |
| lexA-dinF-yjbJ,lexA,lexA-dinF | tyrR, yhjC, lexA, uxuR, sxy | 5 | 0.31; 0.13; 0.14; 0.21; 0.19 | 10, 13, 14, 75, 178 |
| lfhA | arsR, uxuR, aaeR, gcvA, sxy | 5 | 0.26; 0.18; 0.29; 0.12; 0.13 | 84, 105, 139, 166, 288 |
| lgoD | ybhD, ttk, cynR, deoR, iclR | 5 | 0.20; 0.26; 0.16; 0.13; 0.17 | 13, 120, 161, 254, 272 |
| lgoT | ybiH, dgsA, aaeR | 3 | 0.12; 0.12; 0.26 | 35, 113, 171 |
| lgt,ppdA-thyA-lgt,thyA-lgt | matA, yncC | 2 | 0.14; 0.16 | 67, 234 |
| lgt-ptsP-rppH,ptsP-rppH | sgcR, lldR, cynR, argR, sxy | 5 | 0.11; 0.23; 0.11; 0.13; 0.11 | 2, 48, 269, 286, 344 |
| lhr | uxuR | 1 | 0.13 | 174 |
| ligA-ypeB | ybaQ | 1 | 0.19 | 247 |
| ligA-zipA-ypeB,ligA-zipA,zipA | yidZ, galS, ttk, fimZ, ypdC, yeiI, arsR, aaeR | 8 | 0.45; 0.14; 0.36; 0.19; 0.11; 0.12; 0.11; 0.11 | 28, 43, 61, 161, 314, 370, 407, 505 |
| ligB | sxy, yafN, yeiI, glnG, deoR, aaeR | 6 | 0.58; 0.32; 0.49; 0.11; 0.13; 0.12 | 14, 17, 36, 128, 252, 470 |
| lipA | yhfR, iclR, dicA, matA, dgsA, deoR, yidZ | 7 | 0.16; 0.27; 0.22; 0.12; 0.11; 0.13; 0.11 | 11, 103, 105, 115, 135, 257, 478 |
| lipB | uxuR, relE, fimZ, dicA, lldR, dicC | 6 | 0.22; 0.15; 0.25; 0.18; 0.13; 0.12 | 65, 70, 106, 141, 183, 425 |
| lipB-ybeD,ybeD | ydjF, uxuR, dicA, dicC | 4 | 0.11; 0.22; 0.18; 0.15 | 45, 64, 142, 326 |
| lipB-ybeD-dacA,dacA | melR, glnG, sxy, deoR | 4 | 0.24; 0.13; 0.20; 0.12 | 45, 86, 163, 287 |
| lit | hdfR, dicC, ybiH, cadC, yheO, lldR, arsR, melR, yafN, iclR, yjjQ, cysB, ulaR, deoR, dicA, yeiI | 16 | 0.15; 0.40; 0.10; 0.15; 0.13; 0.17; 0.25; 0.18; 0.16; 0.23; 0.15; 0.14; 0.14; 0.12; 0.12; 0.12 | 8, 37, 44, 60, 73, 92, 96, 97, 115, 141, 239, 255, 256, 272, 317, 378 |
| livF-livG-livM-livH-livK,livG-livM-livH-livK,livM-livH-livK | yeiE, iclR, gcvA, fimZ | 4 | 0.23; 0.25; 0.13; 0.11 | 49, 119, 145, 314 |
| livJ | dgsA, yidZ, uxuR, gcvA, arsR, yeiI | 6 | 0.21; 0.42; 0.17; 0.10; 0.12; 0.11 | 23, 35, 112, 227, 378, 428 |
| lldP-lldR-lldD | lldR, ompR, exuR, pdhR, dicC, deoR, yafN, argP | 8 | 1.00; 0.11; 0.16; 0.13; 0.31; 0.20; 0.12; 0.10 | 1, 18, 32, 56, 63, 104, 173, 444 |
| lnt-ybeX,ybeX | dicC, dicA, yjjQ, ttk, deoR | 5 | 0.28; 0.18; 0.16; 0.14; 0.11 | 81, 157, 223, 314, 330 |
| lnt-ybeX-ybeY-ybeZ,ybeX-ybeY-ybeZ,ybeY-ybeZ | envY, sxy, sfsB, cysB, aaeR | 5 | 0.12; 0.21; 0.20; 0.14; 0.13 | 111, 144, 158, 238, 427 |
| loiP | uxuR | 1 | 0.12 | 203 |
| lolA-rarA | ulaR, uxuR, gcvA, argR, ybaQ, yeiI, iclR, yidZ | 8 | 0.50; 0.20; 0.16; 0.15; 0.19; 0.13; 0.12; 0.10 | 15, 79, 110, 233, 272, 351, 423, 484 |
| lolC-lolD-lolE,lolC-lolD-lolE-nagK | rutR, yncC, fimZ, sfsB | 4 | 0.12; 0.19; 0.13; 0.13 | 123, 182, 250, 297 |
| lomR | arsR, dgsA, argR, yeiI | 4 | 0.61; 0.10; 0.15; 0.16 | 9, 143, 226, 284 |
| lon-hupB,lon | fimZ, yafN, gcvA, yncC, yeiI, aaeR, sfsB | 7 | 0.40; 0.18; 0.16; 0.13; 0.13; 0.14; 0.10 | 42, 77, 99, 312, 343, 387, 391 |
| lpd | yheO, ttk, ybaQ, aaeR | 4 | 0.26; 0.51; 0.17; 0.12 | 14, 19, 325, 475 |
| lplA-ytjB | melR, cpxR, cusR, sxy, rutR, treR | 6 | 0.30; 0.17; 0.12; 0.34; 0.13; 0.11 | 24, 44, 44, 60, 108, 188 |
| lplT-aas | yegW, cbl, ompR, mraZ, yidZ, yheO, allR, lldR, melR, iclR | 10 | 0.12; 0.28; 0.10; 0.15; 0.37; 0.12; 0.10; 0.15; 0.10; 0.16 | 19, 26, 27, 58, 59, 89, 97, 136, 227, 293 |
| lpoA-yraN-diaA,lpoA,lpoA-yraN-diaA-yraP | exuR, aaeR, ulaR, cysB | 4 | 0.13; 0.20; 0.11; 0.11 | 52, 264, 334, 349 |
| lpp | nrdR, ttk, melR, gcvA, deoR, aaeR | 6 | 0.27; 0.38; 0.15; 0.12; 0.12; 0.14 | 15, 56, 129, 175, 277, 415 |
| lptA-lptB,lptA-lptB-rpoN,lptA-lptB-rpoN-hpf | yhaJ, yddM, gcvA, yeiE, dicC | 5 | 0.22; 0.14; 0.13; 0.10; 0.18 | 18, 37, 144, 190, 241 |
| lptB-rpoN-hpf-ptsN-yhbJ | galS, argP | 2 | 0.10; 0.18 | 104, 234 |
| lptE | yddM, ybaQ | 2 | 0.20; 0.10 | 13, 556 |
| lptF,lptF-lptG | envY, dicA | 2 | 0.17; 0.17 | 53, 163 |
| lpxA-lpxB,lpxA-lpxB-rnhB,lpxA | yegW, relE, ypdC, dgsA, yidZ | 5 | 0.14; 0.20; 0.21; 0.11; 0.20 | 8, 44, 105, 127, 219 |
| lpxC,lpxC-secM | gadW, yjjQ, lldR | 3 | 0.11; 0.15; 0.11 | 152, 244, 250 |
| lpxD | envY, ypdC, iclR, matA, fimZ, sxy, ttk, yeiI | 8 | 0.24; 0.28; 0.25; 0.11; 0.14; 0.16; 0.14; 0.12 | 21, 53, 122, 132, 228, 234, 347, 384 |
| lpxM | cusR, arsR, ttk, lldR, cynR, ybaQ | 6 | 0.27; 0.37; 0.20; 0.11; 0.11; 0.18 | 11, 37, 184, 228, 277, 285 |
| lpxM-mepM,mepM | basR, yagI, argP, sxy | 4 | 0.23; 0.32; 0.31; 0.11 | 8, 21, 82, 335 |
| lpxP | yjiR, yciT, yjjQ, ypdC, dicA, ttk | 6 | 0.13; 0.11; 0.32; 0.15; 0.14; 0.16 | 15, 47, 71, 176, 226, 263 |
| lpxT | ybaQ, matA, cpxR, yncC | 4 | 0.38; 0.13; 0.14; 0.13 | 60, 78, 83, 321 |
| lrhA | yhfR, iscR, glnG, ulaR, gcvA, nsrR, dicC, yncC, arsR, dicA, sxy, lldR, iclR | 13 | 0.13; 0.18; 0.17; 0.33; 0.22; 0.12; 0.27; 0.31; 0.25; 0.15; 0.17; 0.12; 0.18 | 23, 39, 50, 53, 54, 73, 88, 91, 95, 202, 202, 214, 239 |
| lrp | argR, yjjQ, nsrR, yeiI, iclR, yeiE, argP, sfsB, ybaQ | 9 | 0.44; 0.32; 0.12; 0.34; 0.22; 0.11; 0.17; 0.11; 0.12 | 40, 70, 83, 88, 167, 177, 269, 378, 463 |
| lspA-fkpB-ispH | ycjW, ybaQ, lldR, yagI, ypdC, argR, yidZ, ttk | 8 | 0.23; 0.55; 0.18; 0.10; 0.12; 0.13; 0.15; 0.11 | 14, 22, 90, 231, 272, 282, 323, 451 |
| lsrA-lsrC-lsrD-lsrB-lsrF-lsrG-tam | aaeR, argP, relE, dicC | 4 | 0.34; 0.28; 0.10; 0.18 | 93, 104, 141, 262 |
| lsrK | asnC, nsrR, cadC, cysB, nac | 5 | 0.17; 0.15; 0.11; 0.15; 0.12 | 7, 36, 110, 209, 353 |
| lsrR,lsrK-lsrR | aaeR, argP, relE, dicC | 4 | 0.34; 0.28; 0.10; 0.18 | 92, 104, 140, 262 |
| luxS | yheO, yddM, gcvA, ybhD, melR, yeiI, yjjQ, treR | 8 | 0.31; 0.17; 0.29; 0.10; 0.18; 0.29; 0.18; 0.10 | 11, 22, 34, 54, 93, 112, 200, 207 |
| luxS-gshA,gshA | ygiT, yidZ, yafN | 3 | 0.12; 0.32; 0.12 | 24, 93, 200 |
| luxS-gshA-yqaA-yqaB,yqaA-yqaB | relE, ybaQ, yjjQ | 3 | 1.00; 0.33; 0.11 | 3, 76, 344 |
| lysA | ybaQ, yeiI, sfsB | 3 | 0.59; 0.23; 0.16 | 18, 167, 220 |
| lysC5p | envY, melR, uxuR, nsrR, yjjQ, yeiE, cbl, argP | 8 | 0.19; 0.23; 0.22; 0.11; 0.23; 0.13; 0.13; 0.19 | 41, 53, 66, 96, 130, 137, 167, 231 |
| lysP | yddM, argP, arsR, ttk | 4 | 0.19; 0.37; 0.27; 0.12 | 17, 49, 79, 420 |
| lysP-yeiE,yeiE | yeiE, betI, yeiI, allR, ttk, cysB, argR, sfsB, argP, aaeR | 10 | 0.75; 0.10; 0.45; 0.11; 0.22; 0.15; 0.11; 0.11; 0.12; 0.11 | 2, 35, 47, 79, 168, 220, 345, 376, 385, 491 |
| lysQ | mraZ, yeiE | 2 | 0.26; 0.16 | 11, 99 |
| lysR | ybaQ, sfsB | 2 | 0.59; 0.16 | 17, 219 |
| lysS-prfB | yhaJ, ttk, uxuR | 3 | 0.15; 0.26; 0.14 | 39, 122, 166 |
| lysT-valT-lysW-valZ-lysY-lysZ-lysQ,lysT-valT-lysW | basR, yncC, aaeR | 3 | 0.11; 0.26; 0.15 | 52, 118, 362 |
| lysU | basR, arsR, ttk, yidZ | 4 | 0.10; 0.16; 0.12; 0.10 | 68, 238, 407, 495 |
| lysZ | mraZ, relE, yeiE, ttk | 4 | 0.26; 0.50; 0.16; 0.22 | 10, 10, 98, 162 |
| maa | hdfR, treR, cusR, deoR, ycjW, yncC, sxy | 7 | 0.11; 0.32; 0.12; 0.24; 0.14; 0.27; 0.12 | 15, 21, 40, 53, 55, 113, 310 |
| maa-hha | hdfR, ydjF, argR, sfsB, dicA, ypdC, sxy, yidZ | 8 | 0.11; 0.12; 0.23; 0.20; 0.16; 0.11; 0.12; 0.15 | 14, 29, 109, 163, 191, 294, 311, 316 |
| macA-macB | cynR, argP, dicC, arsR, yeiI | 5 | 0.27; 0.22; 0.19; 0.14; 0.10 | 45, 179, 233, 285, 463 |
| macB | envY, ybaQ, sfsB, lldR | 4 | 0.39; 0.46; 0.26; 0.14 | 5, 29, 106, 164 |
| mak | envY | 1 | 0.19 | 43 |
| malF-malE,malG-malF-malE | yjjQ, deoR | 2 | 0.13; 0.11 | 276, 301 |
| malI | hdfR, hcaR, iclR, yidZ, nac, arsR, argP | 7 | 0.17; 0.19; 0.28; 0.31; 0.24; 0.18; 0.20 | 6, 17, 83, 98, 153, 193, 212 |
| malK,malK-lamB-malM | yjjQ, deoR | 2 | 0.13; 0.11 | 277, 301 |
| malQ-malP,malP | relE, ycjW, dicA, yafN, ulaR, sfsB, dicC | 7 | 0.21; 0.12; 0.24; 0.11; 0.13; 0.12; 0.13 | 42, 67, 84, 213, 284, 343, 388 |
| malS | yheO, ulaR, sfsB | 3 | 0.13; 0.26; 0.33 | 68, 73, 79 |
| malT | dgsA, ttk, ulaR, sfsB, dicC, ybaQ | 6 | 0.18; 0.31; 0.13; 0.12; 0.13; 0.10 | 28, 76, 285, 344, 389, 564 |
| malX-malY | hdfR, hcaR, iclR, nac, arsR, argP | 6 | 0.17; 0.19; 0.28; 0.24; 0.18; 0.20 | 5, 16, 84, 153, 192, 211 |
| malY | cysB, nac | 2 | 0.38; 0.30 | 24, 98 |
| malZ | ycjZ, cadC, cbl, yafN, ybaQ | 5 | 0.14; 0.28; 0.19; 0.13; 0.11 | 11, 13, 90, 152, 541 |
| manA,manA-ydgA | allR, cynR, ttk | 3 | 0.11; 0.14; 0.13 | 69, 191, 392 |
| manX-manY-manZ,manX-manY-manZ-yobD | cusR, dgsA, betI, gadW, nsrR, tyrR, aaeR | 7 | 0.49; 0.46; 0.10; 0.15; 0.11; 0.13; 0.14 | 4, 5, 42, 81, 90, 109, 423 |
| marC | marA, yegW, relE, yeiI, uxuR, sfsB, aaeR | 7 | 0.18; 0.10; 0.11; 0.24; 0.14; 0.18; 0.14 | 10, 46, 122, 146, 156, 191, 417 |
| marR-marA-marB | marA, yeiI, sfsB, aaeR | 4 | 0.18; 0.24; 0.18; 0.14 | 9, 145, 190, 418 |
| matA | matA, yjjQ, ydjF, cbl, yeiE, fimZ, nac, dicA, aaeR | 9 | 1.00; 0.58; 0.16; 0.16; 0.12; 0.15; 0.16; 0.14; 0.20 | 1, 13, 14, 125, 151, 209, 232, 241, 260 |
| matP | yhjC, sxy, yheO, dicA, gcvA | 5 | 0.10; 0.34; 0.12; 0.22; 0.10 | 31, 62, 82, 100, 225 |
| mazF-mazE-relA-rlmD,mazE-relA-rlmD,rlmD | yncC, sxy, ybaQ | 3 | 0.20; 0.12; 0.12 | 158, 316, 453 |
| mbiA | ulaR, rutR, ypdC | 3 | 0.57; 0.13; 0.14 | 10, 101, 196 |
| mcaS | sfsB, ybcM, yhfR, envY, argR, argP, yeiI | 7 | 0.74; 0.11; 0.13; 0.21; 0.45; 0.29; 0.14 | 7, 17, 25, 28, 37, 99, 327 |
| mcbA | yhjC, yhaJ, iclR, gadW, ypdC, sxy, yjjQ | 7 | 0.13; 0.15; 0.34; 0.16; 0.16; 0.15; 0.13 | 16, 41, 45, 68, 165, 246, 286 |
| mcrA | cadC, matA, ybiH, exuR, tyrR, yeiI, ulaR | 7 | 0.20; 0.20; 0.13; 0.13; 0.11; 0.20; 0.13 | 25, 26, 31, 47, 135, 200, 276 |
| mcrC-mcrB | ygiT, melR, uxuR, yidZ, iclR | 5 | 0.13; 0.25; 0.11; 0.14; 0.10 | 16, 41, 231, 357, 499 |
| mdaB,mdaB-ygiN | srlR, nsrR, cbl, yheO, yncC, nac, argP, yeiI, arsR, ypdC | 10 | 0.33; 0.16; 0.23; 0.14; 0.40; 0.25; 0.23; 0.19; 0.15; 0.10 | 3, 27, 46, 52, 68, 135, 167, 228, 284, 340 |
| mdfA | kdgR, yjjQ, matA, dicA, sfsB, iclR | 6 | 0.14; 0.34; 0.12; 0.16; 0.17; 0.14 | 21, 60, 92, 185, 210, 389 |
| mdh | cbl, argR, yafN, cysB, ulaR, gcvA, dicC, argP | 8 | 0.41; 0.61; 0.18; 0.18; 0.19; 0.11; 0.14; 0.12 | 10, 22, 80, 147, 148, 199, 355, 366 |
| mdlA-mdlB | ulaR, nac | 2 | 0.13; 0.11 | 259, 374 |
| mdtA,mdtA-mdtB-mdtC-iceT-baeS-baeR | yddM, nsrR, ttk, sxy | 4 | 0.15; 0.13; 0.21; 0.17 | 27, 52, 175, 213 |
| mdtE-mdtF | dgsA, sfsB, yjjQ, argR, iclR | 5 | 0.10; 0.15; 0.11; 0.11; 0.11 | 154, 260, 339, 351, 470 |
| mdtG | marA, ybaQ, deoR, argP, yidZ, ttk | 6 | 0.11; 0.24; 0.12; 0.12; 0.13; 0.11 | 40, 168, 275, 359, 386, 461 |
| mdtH | cysB, aaeR, yeiI, yjjQ, ybaQ | 5 | 0.20; 0.26; 0.22; 0.17; 0.11 | 116, 172, 183, 202, 503 |
| mdtI-mdtJ | yjjQ, dicC, iclR, ttk, yncC | 5 | 0.33; 0.26; 0.21; 0.15; 0.13 | 66, 106, 176, 290, 330 |
| mdtK | gcvA, yidZ, dicC | 3 | 0.26; 0.21; 0.14 | 47, 195, 336 |
| mdtL | yidZ, arsR | 2 | 0.53; 0.13 | 18, 342 |
| mdtP-mdtO-mdtN | gcvA, yncC, arsR | 3 | 0.25; 0.29; 0.14 | 49, 101, 317 |
| melA-melB | melR, envY, yidZ, ybaQ | 4 | 0.48; 0.17; 0.19; 0.18 | 7, 54, 225, 279 |
| melR | melR, envY, yidZ, ybaQ | 4 | 0.48; 0.17; 0.19; 0.18 | 6, 55, 226, 279 |
| menE-menC-menB | yafN, ulaR, lldR, yjjQ, yeiI, arsR | 6 | 0.36; 0.22; 0.11; 0.14; 0.13; 0.12 | 13, 115, 260, 266, 344, 397 |
| menE-menC-menB-menH-menD,menB-menH-menD | gcvA, melR, argP, sxy | 4 | 0.20; 0.15; 0.15; 0.10 | 62, 132, 313, 349 |
| menE-menC-menB-menH-menD-menF,menH-menD-menF,menD-menF | lldR, deoR, argP | 3 | 0.33; 0.28; 0.11 | 17, 32, 403 |
| menF-elaB-elaA,elaB-elaA,elaA | yfeC, ybaQ, cysB, sfsB | 4 | 0.43; 0.56; 0.27; 0.15 | 4, 21, 53, 269 |
| mepH | argP, nsrR, yhaJ | 3 | 0.90; 0.47; 0.10 | 2, 3, 86 |
| mepM-znuA,znuA | zur, aaeR, ulaR, deoR, sxy, sfsB, ybaQ | 7 | 0.27; 0.32; 0.17; 0.14; 0.14; 0.10; 0.13 | 6, 113, 199, 213, 258, 398, 441 |
| mepS | ybhD, yagI, yeiI, yncC, yeiE, sfsB, cynR, yidZ | 8 | 0.30; 0.28; 0.45; 0.46; 0.12; 0.22; 0.16; 0.14 | 4, 39, 48, 49, 139, 149, 154, 342 |
| metA | tyrR, iclR, yagI, yeiI, yafN, cysB, yjjQ | 7 | 0.13; 0.24; 0.13; 0.20; 0.10; 0.10; 0.10 | 90, 133, 160, 204, 257, 356, 366 |
| metB-metL | yncC, nagC, rutR, matA, cynR, yeiI, deoR, ttk | 8 | 0.99; 0.20; 0.14; 0.12; 0.14; 0.19; 0.13; 0.14 | 2, 14, 92, 105, 201, 223, 262, 341 |
| metC,metC-yghB | yfeC, cysB | 2 | 0.12; 0.11 | 75, 346 |
| metE | metR, cynR, yeiI, fimZ, nac, argR, sxy | 7 | 1.00; 0.34; 0.18; 0.13; 0.15; 0.14; 0.12 | 1, 22, 236, 254, 257, 261, 305 |
| metF | nsrR, cadC, gadW, yeiE, ulaR, yncC, ttk | 7 | 0.14; 0.12; 0.12; 0.14; 0.14; 0.14; 0.15 | 44, 93, 107, 115, 249, 286, 313 |
| metG | yciT, gcvA, ycjW, galS, treR, ttk, dicC | 7 | 0.16; 0.27; 0.16; 0.12; 0.17; 0.20; 0.18 | 12, 41, 42, 71, 101, 192, 260 |
| metH | iclR, dicC, fimZ | 3 | 0.89; 0.58; 0.25 | 2, 7, 108 |
| metK | cpxR, ydjF, cynR, argR, dicC | 5 | 0.21; 0.11; 0.13; 0.12; 0.12 | 25, 37, 213, 315, 447 |
| metL | yidZ, dgsA, aaeR | 3 | 0.40; 0.12; 0.19 | 47, 105, 273 |
| metQ | cpxR | 1 | 0.25 | 19 |
| metR | metR, cynR, yeiI, fimZ, nac, argR, sxy | 7 | 1.00; 0.34; 0.18; 0.13; 0.15; 0.14; 0.12 | 2, 22, 237, 253, 258, 261, 305 |
| metZ-metW-metV | relE, yafN, allR, yidZ | 4 | 0.52; 0.60; 0.12; 0.21 | 4, 5, 61, 200 |
| mfd | arsR, cysB, yjjQ, ybaQ | 4 | 0.47; 0.21; 0.13; 0.12 | 22, 103, 280, 459 |
| mglC-mglA | glnG, lldR, argP, aaeR | 4 | 0.14; 0.14; 0.18; 0.18 | 79, 138, 247, 300 |
| mglC-mglA-mglB,mglA-mglB | galR, galS, deoR, ygiT, yddM, cpxR, sfsB, arsR | 8 | 0.11; 0.17; 0.32; 0.11; 0.12; 0.11; 0.11; 0.10 | 17, 23, 24, 33, 54, 140, 372, 444 |
| mgrR | exuR, matA, argR, fimZ, deoR | 5 | 0.13; 0.16; 0.29; 0.18; 0.14 | 53, 53, 75, 168, 227 |
| mgsA | ypdC, melR, yeiI | 3 | 1.00; 0.11; 0.11 | 1, 213, 410 |
| mgtA-mgtL | yegW, cysB, ypdC, fimZ, ttk | 5 | 0.10; 0.26; 0.16; 0.17; 0.15 | 36, 68, 161, 173, 286 |
| mgtA5p | racR, iclR, yagI, ypdC, aaeR, ttk | 6 | 0.12; 0.20; 0.11; 0.13; 0.15; 0.12 | 33, 210, 221, 230, 356, 429 |
| mgtT | argP, exuR, matA, argR, arsR | 5 | 0.74; 0.13; 0.16; 0.29; 0.18 | 8, 49, 54, 74, 198 |
| mhpA-mhpB-mhpC-mhpD-mhpF-mhpE | mhpR, ybaQ, yhaJ, dicA | 4 | 1.00; 0.94; 0.19; 0.27 | 2, 4, 25, 46 |
| mhpT | nhaR, ypdC, nac | 3 | 0.10; 0.14; 0.11 | 5, 219, 369 |
| miaA-hfq-hflX,miaA-hfq-hflX-hflK-hflC | yciT, srlR, yeiE, deoR, dicC | 5 | 0.12; 0.11; 0.10; 0.14; 0.14 | 37, 39, 180, 216, 329 |
| micA | yheO, gcvA, ybhD, melR, yeiI, yjjQ, treR | 7 | 0.31; 0.29; 0.10; 0.18; 0.29; 0.18; 0.10 | 10, 35, 53, 92, 113, 199, 208 |
| micC | ebgR, pepA, yjjQ, iclR, dicA, yeiI | 6 | 0.11; 0.11; 0.37; 0.20; 0.14; 0.11 | 11, 21, 44, 195, 255, 405 |
| micF | ompR, yeiI, dicA, marA, deoR, argP, cpxR, ulaR, cysB, aaeR | 10 | 0.56; 0.63; 0.28; 0.10; 0.23; 0.30; 0.11; 0.18; 0.16; 0.22 | 3, 22, 40, 49, 69, 90, 128, 178, 186, 219 |
| micL | iclR, iscR, yidZ, argR, nrdR, arsR, sxy, cysB, ulaR, nac | 10 | 0.39; 0.17; 0.34; 0.19; 0.11; 0.19; 0.18; 0.16; 0.15; 0.11 | 27, 49, 77, 152, 163, 181, 196, 200, 238, 381 |
| minE-minD | gcvA, nac, melR, deoR, dicC, aaeR | 6 | 0.14; 0.25; 0.13; 0.13; 0.15; 0.12 | 132, 142, 160, 245, 328, 467 |
| minE-minD-minC | racR, gadW, iscR, yeiI, argR, melR, dicC, gcvA, aaeR | 9 | 0.21; 0.18; 0.16; 0.30; 0.23; 0.12; 0.21; 0.12; 0.12 | 7, 49, 52, 103, 107, 180, 182, 188, 463 |
| mipA | ybiH, yeiI, yncC, arsR, ulaR, cynR, aaeR, sfsB | 8 | 0.14; 0.52; 0.20; 0.20; 0.16; 0.11; 0.17; 0.12 | 19, 34, 160, 165, 216, 278, 321, 342 |
| mlaA | marA, uxuR | 2 | 0.16; 0.18 | 14, 96 |
| mliC | aaeR, ybhD, yidZ, dicC | 4 | 0.60; 0.11; 0.31; 0.12 | 20, 40, 96, 466 |
| mlrA | glnG | 1 | 0.54 | 5 |
| mltA | relE, yafN, allR, yidZ, ulaR | 5 | 0.52; 0.60; 0.12; 0.21; 0.11 | 4, 6, 62, 199, 351 |
| mltD | yeiE, iscR, yafN, yncC, tyrR, arsR, aaeR | 7 | 0.43; 0.13; 0.15; 0.22; 0.11; 0.14; 0.15 | 11, 85, 123, 139, 156, 287, 355 |
| mltF | purR, nac, dicC | 3 | 0.11; 0.24; 0.13 | 21, 143, 413 |
| mmuM | pepA, yeaT | 2 | 0.13; 0.11 | 10, 11 |
| mmuP-mmuM | yagI, exuR | 2 | 0.19; 0.10 | 94, 97 |
| mngA-mngB | mngR, ypdC, treR, arsR, sfsB | 5 | 1.00; 0.33; 0.22; 0.18; 0.17 | 1, 38, 54, 197, 207 |
| mngB | cbl, lldR, yagI, treR, arsR | 5 | 0.20; 0.18; 0.15; 0.13; 0.13 | 80, 86, 132, 145, 362 |
| mngR | mngR, ypdC, treR, arsR, sfsB, ttk | 6 | 1.00; 0.33; 0.22; 0.18; 0.17; 0.13 | 2, 39, 55, 196, 207, 362 |
| mnmC | fabR, ybcM, sfsB, yafN, melR, argR | 6 | 1.00; 0.13; 0.71; 0.27; 0.13; 0.14 | 1, 8, 9, 32, 170, 250 |
| mnmE | aaeR, yeiI | 2 | 0.24; 0.10 | 182, 456 |
| mnmG-mioC-asnC,mioC-asnC,asnC | asnC, nac, cynR, iclR, treR, envY, matA, argR | 8 | 1.00; 0.79; 0.32; 0.29; 0.18; 0.13; 0.12; 0.18 | 1, 5, 32, 72, 86, 91, 94, 184 |
| mnmH,ylbG-mnmH | yheO, yeiI, hcaR, yddM, fimZ, arsR, melR, uxuR, deoR, sxy | 10 | 0.20; 0.57; 0.11; 0.12; 0.17; 0.19; 0.12; 0.13; 0.11; 0.12 | 19, 24, 42, 49, 178, 184, 185, 185, 305, 330 |
| mntH | yijO, hcaR, deoR, nac, gadW, cpxR, ttk, iclR | 8 | 0.13; 0.39; 0.35; 0.44; 0.14; 0.11; 0.14; 0.15 | 3, 5, 16, 35, 94, 137, 322, 337 |
| mntP | yfeC, cynR, gadW, yheO, ulaR, dicC | 6 | 0.27; 0.28; 0.13; 0.11; 0.16; 0.14 | 9, 42, 101, 105, 204, 331 |
| mntR,mntR-ybiR | mlrA, fimZ, ulaR, nac, yncC | 5 | 0.13; 0.27; 0.21; 0.26; 0.14 | 4, 94, 124, 133, 296 |
| moaA-moaB-moaC-moaD-moaE | iclR, gadW, sxy, glnG, cysB | 5 | 0.31; 0.17; 0.27; 0.11; 0.13 | 58, 67, 85, 106, 258 |
| moaB-moaC-moaD-moaE | ulaR | 1 | 0.17 | 186 |
| mobB-mobA | nac, fimZ | 2 | 0.31; 0.12 | 92, 272 |
| mocA | yfeT, deoR, cpxR | 3 | 0.13; 0.32; 0.11 | 5, 26, 126 |
| modA-modB-modC,modA | nrdR, lldR, dicA, ybaQ, yidZ | 5 | 0.15; 0.17; 0.14; 0.17; 0.14 | 83, 91, 236, 310, 350 |
| modB-modC | uxuR, ttk | 2 | 0.14; 0.11 | 153, 437 |
| modF | yeiI, treR | 2 | 0.29; 0.13 | 111, 147 |
| modF-modE,modE | nrdR, sfsB, dicA, yidZ | 4 | 0.15; 0.24; 0.14; 0.14 | 85, 127, 237, 349 |
| moeB-moeA | cbl, galR, ycjW, argR, ybaQ | 5 | 0.44; 0.11; 0.17; 0.16; 0.11 | 5, 18, 36, 206, 522 |
| mog | pdhR, yfeC, dicA, melR, aaeR | 5 | 0.10; 0.10; 0.21; 0.11; 0.17 | 85, 106, 108, 223, 306 |
| mokB | nagC, sxy | 2 | 0.14; 0.16 | 37, 224 |
| mokC-hokC | rutR, nsrR, yhjC, basR, sxy, treR, sfsB, argP, ttk, dicC | 10 | 0.36; 0.19; 0.11; 0.17; 0.37; 0.19; 0.22; 0.15; 0.14; 0.10 | 4, 17, 21, 23, 55, 71, 146, 311, 340, 534 |
| mpaA | yeiE, cbl, yidZ, fimZ, arsR, iclR, nac, dicC | 8 | 0.33; 0.20; 0.27; 0.18; 0.17; 0.19; 0.12; 0.11 | 23, 78, 120, 167, 214, 236, 360, 498 |
| mpaA-ycjY-ymjC-ymjD,ycjY | ycjZ, gcvA, argP, aaeR | 4 | 1.00; 0.11; 0.19; 0.12 | 1, 202, 229, 456 |
| mpaA-ymjC | yeiE, cbl, arsR, iclR, nac, dicC | 6 | 0.33; 0.20; 0.17; 0.19; 0.12; 0.11 | 22, 78, 215, 237, 359, 497 |
| mpl | sfsB, yjjQ, argR | 3 | 0.35; 0.30; 0.12 | 70, 82, 324 |
| mppA | yeiE, cynR, cbl | 3 | 0.21; 0.15; 0.10 | 62, 176, 253 |
| mprA-emrA-emrB | argR, lldR, sxy, yeiI, ypdC, aaeR | 6 | 0.32; 0.13; 0.16; 0.15; 0.11; 0.11 | 63, 174, 230, 290, 320, 516 |
| mqo | yeiE, cpxR, yidZ, nac | 4 | 0.27; 0.14; 0.29; 0.16 | 33, 82, 104, 229 |
| mraZ-rsmH-ftsL,mraZ-rsmH-ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC | mraZ, deoR, yeiI, pdhR, gadW, sfsB, lldR | 7 | 1.00; 0.25; 0.44; 0.11; 0.11; 0.19; 0.11 | 1, 50, 51, 80, 138, 184, 239 |
| mrcA | ompR, sxy, yafN, iclR | 4 | 0.12; 0.44; 0.20; 0.24 | 14, 33, 67, 136 |
| mrcB | arsR, yheO, cysB | 3 | 0.39; 0.17; 0.21 | 28, 32, 107 |
| mrdA-rlmH-rsfS,rlmH-rsfS,mrdB-mrdA-rlmH-rsfS,rlpA-mrdB-mrdA-rlmH-rsfS | lldR, nac | 2 | 0.22; 0.16 | 56, 245 |
| mreB-csrD,csrD | deoR, yjjQ | 2 | 0.27; 0.10 | 39, 353 |
| mreD-mreC | treR, nac, lldR, yagI, yidZ, ybaQ, yeiI | 7 | 0.30; 0.39; 0.18; 0.17; 0.22; 0.18; 0.10 | 22, 53, 78, 110, 167, 306, 451 |
| mreD-mreC-mreB,yhdE-mreD-mreC-mreB,mreB | cpxR, fimZ, aaeR, yjjQ, treR, deoR, ttk | 7 | 0.24; 0.48; 0.31; 0.23; 0.11; 0.14; 0.16 | 20, 28, 115, 123, 206, 223, 269 |
| mrr | trpR, deoR, lldR, nac | 4 | 0.12; 0.17; 0.10; 0.12 | 25, 142, 284, 355 |
| msbA-lpxK-ycaQ-ycaR,msbA-lpxK | kdgR, aaeR, sxy | 3 | 0.12; 0.43; 0.13 | 33, 47, 301 |
| mscK | zur, argR, yncC, iclR | 4 | 0.17; 0.17; 0.17; 0.10 | 10, 195, 208, 498 |
| mscL | dgsA, galS, argP, gcvA, sfsB, yeiE, cynR, fimZ, aaeR, yidZ | 10 | 0.23; 0.15; 0.38; 0.14; 0.20; 0.11; 0.12; 0.12; 0.17; 0.13 | 20, 30, 46, 126, 156, 175, 245, 264, 319, 399 |
| mscM-psd,psd | paaX, deoR, yagI | 3 | 0.11; 0.17; 0.10 | 6, 138, 239 |
| msrA | ulaR, ybaQ, argR, cynR | 4 | 0.29; 0.26; 0.16; 0.11 | 60, 125, 213, 280 |
| msyB | yafN, treR, gcvA, yeiI | 4 | 0.42; 0.35; 0.11; 0.13 | 8, 14, 208, 349 |
| msyB-mdtG-lpxL,lpxL | cusR, dgsA, gcvA, dicC, exuR, nac, glnG, yeiE, yeiI, ybaQ | 10 | 0.13; 0.15; 0.19; 0.30; 0.11; 0.28; 0.10; 0.12; 0.21; 0.20 | 33, 48, 69, 73, 77, 108, 133, 142, 188, 245 |
| mtfA-asnT,mtfA | yciT, melR, ypdC | 3 | 0.24; 0.20; 0.11 | 6, 70, 317 |
| mtgA-elbB | arsR, yhfZ, sfsB, argP, yeiI | 5 | 0.74; 0.11; 0.42; 0.19; 0.11 | 3, 5, 40, 222, 425 |
| mtlA,mtlA-mtlD-mtlR | deoR, nac, cadC, nrdR, fimZ, gadW | 6 | 0.47; 0.61; 0.14; 0.15; 0.19; 0.11 | 5, 16, 69, 87, 156, 156 |
| mtr | trpR, ybaQ, glnG, mraZ, yidZ, deoR, yeiI | 7 | 1.00; 0.42; 0.18; 0.14; 0.26; 0.11; 0.11 | 1, 42, 43, 66, 125, 304, 429 |
| mtr-deaD,deaD | cadC, cbl, dicA, dicC, yidZ | 5 | 0.10; 0.13; 0.17; 0.20; 0.13 | 124, 170, 174, 215, 370 |
| mug | yidZ, yncC, ttk | 3 | 0.91; 0.77; 0.17 | 3, 15, 255 |
| mug-yqjH,yqjH | yqjI, nsrR, gcvA, iclR, yncC, sfsB, aaeR | 7 | 1.00; 0.14; 0.12; 0.21; 0.20; 0.12; 0.11 | 1, 41, 157, 170, 172, 321, 520 |
| mukF-mukE | rutR, sfsB, uxuR, treR, aaeR, dicC, yidZ, ybaQ | 8 | 0.17; 0.25; 0.13; 0.11; 0.23; 0.18; 0.10; 0.10 | 49, 115, 192, 193, 204, 261, 488, 552 |
| murA | yncC, dicA, ttk | 3 | 0.47; 0.13; 0.10 | 46, 270, 482 |
| murA-ibaG,ibaG | yncC, ttk | 2 | 0.47; 0.15 | 47, 289 |
| murA-ibaG-mlaB-mlaC,mlaB-mlaC | aaeR | 1 | 0.18 | 299 |
| murB-birA | lldR, ypdC, arsR | 3 | 0.14; 0.16; 0.11 | 152, 166, 422 |
| murI,murI-rrsB-gltT | gadW, exuR, aaeR, ttk, yeiI, lldR | 6 | 0.24; 0.15; 0.42; 0.33; 0.36; 0.17 | 22, 37, 52, 71, 77, 103 |
| murJ | yidZ, rutR, ybaQ, treR, ulaR, argP | 6 | 0.89; 0.33; 0.37; 0.19; 0.11; 0.13 | 4, 7, 63, 70, 340, 356 |
| murQ-murP-yfeW,murQ-murP | yfeT, aaeR, yjjQ, yncC | 4 | 1.00; 0.36; 0.18; 0.18 | 1, 87, 195, 195 |
| mutH | iclR, mraZ, ulaR, argR, deoR | 5 | 0.35; 0.10; 0.19; 0.13; 0.10 | 39, 131, 161, 287, 359 |
| mutL-miaA-hfq-hflX-hflK-hflC,mutL-miaA-hfq | yeiE, argR, ybaQ, gcvA | 4 | 0.25; 0.23; 0.25; 0.12 | 40, 105, 159, 160 |
| mutM | yddM, glnG, ttk, dicC | 4 | 0.12; 0.11; 0.15; 0.11 | 48, 121, 287, 503 |
| mutM-rpmG-rpmB,rpmG-rpmB | aaeR, yddM, cbl, ttk, yeiI | 5 | 0.59; 0.12; 0.19; 0.16; 0.11 | 23, 47, 83, 278, 432 |
| mutM-rpmG-rpmB-yicR,rpmG-rpmB-yicR | sxy, ypdC, argP | 3 | 0.33; 0.22; 0.11 | 66, 85, 410 |
| mutS-pphB,mutS | yeiI, sxy, ypdC, cynR, cbl | 5 | 0.91; 0.33; 0.21; 0.16; 0.11 | 3, 65, 102, 156, 240 |
| mutY-yggX-mltC,mutY-yggX-mltC-nupG,mutY-yggX | exuR, uxuR, ybaQ | 3 | 0.11; 0.18; 0.14 | 86, 107, 387 |
| nac | ygiT, iclR, glnG | 3 | 0.12; 0.37; 0.16 | 22, 34, 55 |
| nadA-pnuC | ydjF, sfsB | 2 | 0.13; 0.44 | 25, 37 |
| nadB | nsrR, ttk, deoR | 3 | 0.13; 0.31; 0.10 | 61, 79, 333 |
| nadC | relE, argP, iscR, aaeR, sfsB, ttk, dicC | 7 | 0.22; 0.37; 0.13; 0.27; 0.21; 0.16; 0.12 | 39, 52, 93, 151, 152, 277, 437 |
| nadE,nadE-cho | pspF, aaeR, yeiE, lldR, yncC | 5 | 0.10; 0.39; 0.13; 0.10; 0.11 | 22, 64, 132, 262, 362 |
| nadK-recN,nadK | iclR, yncC, ybaQ | 3 | 0.39; 0.22; 0.24 | 30, 142, 166 |
| nagC-nagA,nagA | cpxR, yagI, deoR, yeiI | 4 | 0.16; 0.21; 0.15; 0.17 | 47, 63, 194, 273 |
| nagE | nagC, basR, lldR, deoR, fimZ, ybaQ, iclR, cysB | 8 | 0.35; 0.16; 0.21; 0.22; 0.24; 0.26; 0.19; 0.11 | 9, 25, 61, 79, 121, 121, 226, 337 |
| nagK-cobB | dicA, sxy | 2 | 0.23; 0.12 | 87, 318 |
| nagZ-ycfP | yddM | 1 | 0.17 | 24 |
| nanR | tyrR, ycjZ, nrdR, dicA, argR, cynR, iclR, aaeR | 8 | 0.30; 0.10; 0.13; 0.18; 0.19; 0.11; 0.14; 0.10 | 11, 42, 120, 148, 158, 266, 377, 541 |
| nanS | argR, cysB, iclR, deoR, lldR | 5 | 0.22; 0.18; 0.21; 0.14; 0.11 | 113, 155, 188, 224, 229 |
| nanS-nanM-nanC,nanM-nanC,nanC | exuR, glnG, tyrR, ulaR, arsR, iclR | 6 | 0.31; 0.21; 0.11; 0.12; 0.13; 0.12 | 8, 30, 167, 298, 331, 454 |
| napC-napB-napH-napG-napA-napD-napF,ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA-napC-napB-napH-napG-napA-napD-napF,napA-napD-napF | ypdC, ybhD, dgsA, melR, mraZ, cpxR, cynR, ttk, nac, argP | 10 | 0.38; 0.11; 0.14; 0.19; 0.14; 0.12; 0.17; 0.24; 0.16; 0.11 | 27, 38, 75, 78, 80, 119, 138, 142, 244, 421 |
| narG,narG-narH-narJ-narI | ttk, yjjQ, cynR, gadW | 4 | 0.59; 0.40; 0.21; 0.13 | 10, 34, 91, 104 |
| narK | argP, gadW, lldR, aaeR | 4 | 0.86; 0.26; 0.28; 0.22 | 4, 12, 32, 218 |
| narL-narX | argP, gadW, aaeR | 3 | 0.86; 0.26; 0.22 | 4, 12, 217 |
| naRNA1 | yddM, cadC, ybaQ, dicC, ttk | 5 | 0.14; 0.11; 0.26; 0.17; 0.13 | 32, 108, 136, 268, 383 |
| naRNA2 | yddM, cadC, ybaQ, dicC, ttk | 5 | 0.14; 0.11; 0.26; 0.17; 0.13 | 32, 109, 140, 268, 383 |
| naRNA3 | yddM, cadC, ybaQ, nrdR, ttk | 5 | 0.15; 0.11; 0.26; 0.11; 0.13 | 30, 106, 140, 175, 383 |
| naRNA4 | cadC, ybaQ, nrdR, ttk | 4 | 0.11; 0.26; 0.11; 0.13 | 106, 138, 176, 383 |
| naRNA5 | cadC, ybaQ, nrdR, ttk | 4 | 0.11; 0.26; 0.11; 0.13 | 106, 138, 177, 386 |
| naRNA6 | ybaQ, nrdR, yjjQ, sfsB, ttk | 5 | 0.26; 0.11; 0.14; 0.13; 0.15 | 138, 177, 261, 294, 296 |
| narP | treR, ycjW, yagI, iscR, argR | 5 | 0.27; 0.11; 0.19; 0.11; 0.17 | 29, 84, 88, 124, 199 |
| narQ | argP, deoR, yeiI | 3 | 0.49; 0.21; 0.27 | 25, 85, 128 |
| narU | yddM, gcvA, cysB, yidZ, nac | 5 | 0.10; 0.17; 0.20; 0.14; 0.10 | 77, 95, 128, 361, 403 |
| narV-narW | envY, uxuR, nrdR, ypdC, argR | 5 | 0.19; 0.23; 0.13; 0.16; 0.13 | 38, 59, 122, 160, 300 |
| narV-narW-narY-narZ | gadW, yfeC, yeiI, aaeR, yidZ, ybaQ | 6 | 0.17; 0.11; 0.31; 0.29; 0.19; 0.15 | 52, 95, 97, 136, 227, 377 |
| nc1 | fabR, ybhD, relE, glnG, yafN, argR, yagI, fimZ, gcvA, yidZ, iclR | 11 | 0.10; 0.14; 0.12; 0.11; 0.14; 0.20; 0.12; 0.15; 0.10; 0.15; 0.12 | 16, 24, 107, 126, 131, 142, 190, 217, 228, 321, 445 |
| nc10 | yhjC, nrdR, deoR | 3 | 0.10; 0.17; 0.11 | 33, 60, 306 |
| nc2 | yeiE, pdhR, rutR, matA, sfsB, arsR | 6 | 0.25; 0.13; 0.17; 0.12; 0.17; 0.12 | 37, 49, 50, 97, 202, 398 |
| nc3 | arsR, dicA, uxuR | 3 | 0.38; 0.18; 0.14 | 33, 155, 160 |
| nc4 | yncC, melR, cynR, ulaR | 4 | 0.32; 0.16; 0.15; 0.15 | 89, 116, 164, 222 |
| nc6 | modE, rutR, dicC, ulaR, lldR | 5 | 0.11; 0.11; 0.23; 0.18; 0.11 | 11, 135, 138, 179, 234 |
| nc7 | yeiI, deoR, iclR | 3 | 0.36; 0.22; 0.20 | 74, 77, 203 |
| nc8 | uxuR, treR, ybaQ, aaeR | 4 | 0.24; 0.15; 0.23; 0.15 | 57, 121, 186, 352 |
| nc9 | rutR, aaeR, deoR, cbl, ybaQ, iclR | 6 | 0.29; 0.42; 0.19; 0.13; 0.16; 0.15 | 12, 54, 115, 174, 332, 340 |
| ndh | pdhR, yoeB, exuR, yheO, dicA, envY, lldR, iclR, argP | 9 | 0.61; 0.13; 0.12; 0.13; 0.24; 0.13; 0.13; 0.16; 0.12 | 2, 3, 61, 75, 79, 94, 177, 294, 386 |
| ndk,yfgA-rlmN-ndk | trpR, sxy, yagI | 3 | 0.18; 0.23; 0.10 | 9, 124, 240 |
| nei | cbl, dicA, aaeR | 3 | 0.17; 0.11; 0.15 | 105, 342, 369 |
| nemA | ybaQ, yidZ | 2 | 0.19; 0.15 | 262, 318 |
| nepI | ypdC, arsR | 2 | 0.17; 0.17 | 152, 218 |
| nfi-yjaG-hupA | matA, sxy, cusR, ybaQ, argP | 5 | 0.18; 0.38; 0.11; 0.14; 0.11 | 41, 50, 52, 385, 419 |
| nfo,nfo-yeiI | deoR | 1 | 0.14 | 222 |
| nfrA-nfrB,nfrB | tyrR, cadC, uxuR, matA, iscR, pdhR, cysB, ybaQ | 8 | 0.34; 0.16; 0.25; 0.14; 0.14; 0.11; 0.12; 0.13 | 4, 48, 52, 62, 73, 78, 295, 444 |
| nfuA | sxy, deoR, nac, dicC | 4 | 0.32; 0.13; 0.15; 0.13 | 68, 238, 268, 396 |
| nhaA-nhaR,nhaA | nhaR, nsrR, basR, sxy, argP, ttk, dicC | 7 | 1.00; 0.19; 0.17; 0.37; 0.15; 0.12; 0.10 | 1, 18, 24, 54, 310, 428, 535 |
| nhaR | fimZ, dicC, treR, uxuR, argP, arsR | 6 | 0.84; 0.33; 0.17; 0.17; 0.13; 0.12 | 3, 55, 98, 114, 355, 384 |
| nhoA | yjjQ | 1 | 0.15 | 230 |
| nikA-nikB-nikC-nikD,nikA-nikB-nikC-nikD-nikE-nikR | arsR, tyrR, ypdC | 3 | 0.50; 0.14; 0.13 | 18, 80, 233 |
| nikR | yidZ, yeiI, iclR | 3 | 0.18; 0.15; 0.14 | 255, 306, 385 |
| nirC | pepA, cpxR, yheO, yfeC, treR, melR, nac, sfsB, argP | 9 | 0.14; 0.15; 0.12; 0.11; 0.18; 0.14; 0.20; 0.13; 0.15 | 6, 62, 81, 85, 90, 147, 185, 305, 307 |
| nlpA | yafN, envY, cysB, arsR, argR, yeiI, yidZ, ttk | 8 | 0.28; 0.17; 0.21; 0.24; 0.13; 0.14; 0.13; 0.11 | 30, 57, 102, 107, 290, 314, 367, 435 |
| nlpC,ydiV-nlpC | exuR, fimZ, ulaR | 3 | 0.10; 0.10; 0.12 | 98, 326, 326 |
| nlpC-btuD-btuE,btuE | pspF, relE, mraZ, ttk, dicC | 5 | 0.11; 0.16; 0.10; 0.16; 0.15 | 19, 64, 130, 268, 306 |
| nlpE | melR, glnG, deoR | 3 | 0.34; 0.15; 0.17 | 18, 71, 147 |
| nlpI | envY, yidZ | 2 | 0.11; 0.24 | 132, 149 |
| nmpC | srlR, tyrR, iclR, yagI, cysB, dicA, argR | 7 | 0.10; 0.13; 0.26; 0.12; 0.16; 0.13; 0.13 | 49, 99, 114, 186, 197, 258, 284 |
| nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC,nnr-tsaE-amiB | ttk, relE, yidZ, ybaQ, aaeR | 5 | 0.28; 0.10; 0.25; 0.16; 0.12 | 107, 134, 135, 335, 468 |
| nohD | agaR, nagC, dicC, ulaR, yafN, arsR | 6 | 0.13; 0.10; 0.29; 0.18; 0.10; 0.15 | 5, 75, 77, 168, 260, 281 |
| norR | argP, iclR | 2 | 0.57; 0.19 | 18, 234 |
| norV-norW | argP, iclR | 2 | 0.57; 0.19 | 19, 235 |
| nrdA-nrdB-yfaE | nrdR, cynR, nac, cbl, matA, nsrR, dicC, yncC, iclR | 9 | 0.63; 0.50; 0.38; 0.17; 0.12; 0.11; 0.23; 0.21; 0.15 | 2, 5, 55, 104, 104, 107, 147, 152, 330 |
| nrdB-yfaE | cusR, uxuR, yidZ | 3 | 0.16; 0.18; 0.12 | 20, 101, 428 |
| nrdG | fabR, nrdR, fimZ, ybaQ, yafN, aaeR, yeiI | 7 | 0.10; 0.20; 0.25; 0.25; 0.12; 0.18; 0.10 | 18, 38, 112, 161, 180, 302, 448 |
| nrdG-nrdD | nrdR, ypdC, argP, arsR | 4 | 1.00; 0.13; 0.15; 0.13 | 1, 236, 306, 364 |
| nrdH-nrdI-nrdE-nrdF | nrdR, fimZ, sfsB | 3 | 0.37; 0.31; 0.31 | 4, 73, 90 |
| nrdR-ribD-ribE-nusB-thiL,nrdR-ribD-ribE-nusB-thiL-pgpA | racR, rutR, relE, ulaR, fimZ | 5 | 0.14; 0.21; 0.12; 0.13; 0.11 | 23, 32, 103, 289, 318 |
| nrfA-nrfB-nrfC-nrfD,nrfA-nrfB-nrfC-nrfD-nrfE-nrfF-nrfG | iscR, aaeR, nsrR, gadW, arsR, deoR, sfsB | 7 | 0.26; 0.44; 0.10; 0.11; 0.20; 0.14; 0.12 | 23, 45, 116, 130, 154, 209, 346 |
| nsrR-rnr-rlmB-yjfI,nsrR-rnr-rlmB,nsrR-rnr | yafN, dgsA, uxuR | 3 | 0.27; 0.10; 0.12 | 31, 144, 219 |
| nudC-hemE-nfi,nudC-hemE-nfi-yjaG-hupA | racR, deoR, lldR, dicC, yeiI, yidZ | 6 | 0.18; 0.18; 0.13; 0.20; 0.14; 0.11 | 8, 132, 195, 225, 311, 469 |
| nudE | fimZ, arsR, iclR | 3 | 0.50; 0.34; 0.19 | 25, 52, 231 |
| nudG-gdhA,nudG | melR, nac, fimZ, ttk, argP, arsR | 6 | 0.36; 0.29; 0.20; 0.23; 0.16; 0.13 | 16, 104, 147, 147, 293, 345 |
| nudI | cusR, argP, nac, deoR, yidZ | 5 | 0.11; 0.25; 0.19; 0.10; 0.14 | 56, 131, 188, 335, 351 |
| nudJ-rluE | aaeR, gcvA, melR, yafN | 4 | 0.26; 0.12; 0.12; 0.11 | 163, 169, 195, 228 |
| nudK | trpR, nagC, ybaQ | 3 | 0.22; 0.15; 0.13 | 6, 33, 431 |
| nudL-sdaA | glnG, treR, dgsA, gadW | 4 | 0.19; 0.22; 0.14; 0.10 | 35, 53, 54, 165 |
| nuoG | uxuR, yhaJ, lldR, ybaQ, iclR | 5 | 0.30; 0.11; 0.13; 0.19; 0.11 | 28, 70, 184, 265, 461 |
| nuoN-nuoM | sxy, yagI, lldR, sfsB | 4 | 0.62; 0.21; 0.13; 0.11 | 8, 62, 181, 360 |
| nuoN-nuoM-nuoL-nuoK-nuoJ-nuoI-nuoH-nuoG-nuoF-nuoE-nuoC-nuoB-nuoA,nuoE-nuoC-nuoB-nuoA,nuoC-nuoB-nuoA,nuoB-nuoA | purR, melR, cadC, deoR, yfeC, cpxR, sxy, argP, dicA, argR, iclR | 11 | 0.19; 0.31; 0.12; 0.20; 0.10; 0.11; 0.20; 0.21; 0.15; 0.13; 0.16 | 2, 22, 98, 98, 105, 132, 157, 194, 203, 281, 304 |
| nupC,nupC-insL-3 | yijO, hcaR, deoR, nac, gadW, yheO, cpxR, ttk, iclR | 9 | 0.13; 0.39; 0.35; 0.44; 0.14; 0.11; 0.11; 0.14; 0.15 | 4, 5, 16, 34, 95, 109, 137, 323, 337 |
| nupG | deoR, aaeR, basR, allR, yfeC, cysB, ulaR, arsR, sfsB | 9 | 1.00; 0.88; 0.12; 0.11; 0.11; 0.18; 0.17; 0.15; 0.12 | 1, 5, 48, 82, 84, 146, 188, 260, 329 |
| nupX | yagI, rutR, gadW, yidZ, cysB, nac, ybaQ | 7 | 0.27; 0.11; 0.11; 0.23; 0.12; 0.13; 0.14 | 42, 137, 142, 151, 307, 323, 411 |
| obgE | ygiT, allR, nagC, galS | 4 | 0.17; 0.21; 0.17; 0.12 | 7, 12, 22, 79 |
| obgE-yhbE | sfsB, ybaQ, iclR, aaeR | 4 | 0.46; 0.41; 0.16; 0.13 | 31, 47, 279, 447 |
| obgE-yhbE-rpmA-rplU,rpmA-rplU | nac, ybaQ | 2 | 0.11; 0.13 | 370, 434 |
| och5 | nac, yncC, cbl, cynR | 4 | 0.27; 0.24; 0.15; 0.13 | 123, 129, 133, 216 |
| ogrK | gadW, yncC, argR, yidZ | 4 | 0.10; 0.12; 0.10; 0.12 | 162, 336, 370, 401 |
| ogt | lldR, ypdC, argP | 3 | 0.31; 0.20; 0.14 | 18, 109, 322 |
| ogt-abgT-abgB-abgA | hcaR, matA, iclR, sxy, ybaQ, ulaR, nac | 7 | 0.64; 0.29; 0.21; 0.18; 0.19; 0.13; 0.13 | 3, 10, 185, 192, 268, 280, 330 |
| ohsC | iclR, yafN, uxuR, lldR, dicC | 5 | 0.28; 0.16; 0.16; 0.14; 0.10 | 86, 107, 133, 145, 536 |
| ompA | cusR, cynR, yciT, yfeC, fimZ, dicA, deoR, arsR, yidZ, argP | 10 | 0.12; 0.28; 0.10; 0.14; 0.27; 0.22; 0.14; 0.14; 0.14; 0.12 | 36, 40, 56, 60, 96, 99, 215, 296, 365, 372 |
| ompA-sulA,sulA | lexA, sfsB, sxy, ybaQ, deoR | 5 | 0.24; 0.46; 0.29; 0.25; 0.10 | 2, 32, 76, 153, 351 |
| ompG | lldR, ttk, fimZ, tyrR, sfsB, yncC, dicA | 7 | 0.18; 0.28; 0.25; 0.11; 0.17; 0.15; 0.13 | 89, 106, 107, 155, 217, 266, 275 |
| ompL | ycjZ, kdgR, treR, cbl, iclR, cadC, dicA | 7 | 0.11; 0.11; 0.20; 0.20; 0.28; 0.12; 0.19 | 19, 34, 63, 81, 88, 92, 134 |
| ompN | ebgR, pepA, purR, yjjQ, iclR, dicA, yeiI | 7 | 0.11; 0.11; 0.10; 0.37; 0.20; 0.14; 0.11 | 12, 21, 28, 45, 195, 256, 406 |
| ompN-pfo,pfo | gadW, glnG, rutR, ulaR, yidZ | 5 | 0.18; 0.17; 0.15; 0.25; 0.13 | 50, 52, 72, 84, 392 |
| ompT | ybiH, cadC, nsrR, yafN, cynR, nac, yjjQ | 7 | 0.12; 0.16; 0.12; 0.12; 0.13; 0.15; 0.13 | 37, 52, 76, 194, 212, 259, 293 |
| ompT-envY | ygeH, yidZ | 2 | 1.00; 0.11 | 1, 443 |
| ompW | fabR, cysB, gadW, ulaR, arsR, iclR, nac, deoR | 8 | 0.15; 0.32; 0.11; 0.20; 0.19; 0.21; 0.14; 0.10 | 10, 36, 133, 144, 177, 179, 295, 353 |
| ompX | allR, yhfR, melR, nac, yjjQ, ybaQ, argP, yidZ, ulaR | 9 | 0.23; 0.11; 0.19; 0.30; 0.18; 0.19; 0.16; 0.14; 0.11 | 7, 37, 85, 96, 197, 249, 281, 327, 346 |
| ompX-yliM | allR, yhfR, melR, nac, yjjQ, ybaQ, argP, yidZ, ulaR | 9 | 0.23; 0.11; 0.19; 0.30; 0.18; 0.19; 0.16; 0.14; 0.11 | 5, 39, 85, 96, 197, 250, 281, 326, 346 |
| omrA | galR, yegW, ompR, yidZ, mraZ, iclR | 6 | 0.15; 0.12; 0.10; 0.37; 0.15; 0.16 | 7, 19, 27, 58, 60, 292 |
| omrB | galR, uxuR, ompR, yegW, yidZ, ybaQ, iclR | 7 | 0.15; 0.35; 0.10; 0.11; 0.37; 0.31; 0.14 | 7, 21, 27, 28, 60, 89, 386 |
| opgB | glpR, dicC | 2 | 0.11; 0.21 | 17, 188 |
| opgC | marA, iclR, deoR, ttk, yncC, dicC | 6 | 0.14; 0.34; 0.18; 0.22; 0.16; 0.13 | 19, 47, 130, 165, 233, 406 |
| opgD-ydcH-rimL,opgD,opgD-ydcH | cbl, ttk, sxy, yidZ | 4 | 0.17; 0.17; 0.11; 0.10 | 106, 243, 339, 501 |
| opgE | basR, fimZ, sfsB, nac, yncC, yidZ | 6 | 0.12; 0.27; 0.25; 0.26; 0.14; 0.15 | 44, 95, 111, 128, 297, 320 |
| opgG-opgH | marA, iclR, deoR, ttk, yncC, dicC | 6 | 0.14; 0.34; 0.18; 0.22; 0.16; 0.13 | 20, 47, 129, 164, 232, 405 |
| oppA-oppB-oppC-oppD-oppF,oppA-oppB,oppA-oppB-oppC | racR, ybiH, nac, uxuR, dgsA, matA, yheO, sxy, fimZ, yagI, ttk | 11 | 0.12; 0.12; 0.36; 0.20; 0.13; 0.12; 0.11; 0.22; 0.18; 0.13; 0.13 | 35, 40, 66, 81, 88, 99, 104, 131, 171, 178, 373 |
| oppA5p | dicC, melR, galS, dicA, gadW, cpxR, dgsA, uxuR | 8 | 0.51; 0.27; 0.13; 0.27; 0.14; 0.12; 0.11; 0.11 | 14, 34, 45, 53, 89, 110, 117, 273 |
| oppB-oppC-oppD-oppF | ypdC, yegW, uxuR, sxy | 4 | 0.51; 0.10; 0.25; 0.12 | 8, 43, 48, 320 |
| orn-glyV-glyX-glyY,orn | iclR, yafN | 2 | 0.20; 0.10 | 189, 250 |
| osmB | cadC, cusR, yeiE, yidZ, cysB, argR, dicC | 7 | 0.29; 0.12; 0.15; 0.24; 0.13; 0.11; 0.12 | 11, 50, 106, 138, 271, 332, 467 |
| osmC | nsrR, argR, iclR, yjjQ, tyrR, dicC | 6 | 0.13; 0.26; 0.27; 0.23; 0.11; 0.13 | 55, 85, 96, 120, 160, 398 |
| osmE | pspF, aaeR, matA, yeiE, lldR, yncC | 6 | 0.10; 0.39; 0.12; 0.13; 0.10; 0.11 | 21, 63, 101, 131, 261, 363 |
| osmY,osmY-ytjA | basR, yeiE, uxuR, sfsB, yeiI | 5 | 0.12; 0.10; 0.11; 0.10; 0.10 | 49, 178, 243, 389, 445 |
| otsA | ompR, rutR, cpxR, sxy, arsR, nac, sfsB, argP | 8 | 0.11; 0.15; 0.13; 0.16; 0.16; 0.13; 0.12; 0.12 | 19, 74, 90, 229, 230, 315, 352, 363 |
| otsA-otsB | melR, uxuR, yjjQ, fimZ | 4 | 0.16; 0.16; 0.18; 0.15 | 112, 132, 189, 202 |
| oweE | yhjC, nrdR, deoR | 3 | 0.10; 0.17; 0.11 | 35, 59, 306 |
| oxc | nrdR, racR, ulaR, argP, arsR | 5 | 0.24; 0.12; 0.14; 0.14; 0.13 | 24, 40, 257, 321, 340 |
| oxyR | sxy, yeiI, argR | 3 | 0.41; 0.24; 0.14 | 43, 151, 254 |
| oxyS | sxy, yncC, argR | 3 | 0.41; 0.15; 0.14 | 44, 243, 253 |
| paaA-paaB-paaC-paaD-paaE-paaF-paaG-paaH-paaI-paaJ-paaK | paaX, yeaT, envY, yjjQ, dicA, ybaQ, iclR | 7 | 1.00; 0.12; 0.22; 0.27; 0.14; 0.15; 0.13 | 1, 5, 25, 102, 229, 363, 392 |
| paaJ | cbl, aaeR, ybaQ | 3 | 0.15; 0.19; 0.11 | 138, 278, 513 |
| paaK-paaX-paaY,paaK-paaX | mraZ, nsrR, treR, yidZ | 4 | 0.13; 0.11; 0.12; 0.17 | 82, 103, 169, 273 |
| paaX-paaY | uxuR, aaeR, argR | 3 | 0.11; 0.17; 0.11 | 237, 323, 356 |
| paaZ | paaX, yeaT, envY, yjjQ, dicA, ybaQ, iclR | 7 | 1.00; 0.12; 0.22; 0.27; 0.14; 0.15; 0.13 | 1, 5, 25, 103, 228, 364, 392 |
| pabA-fic-yhfG,fic-yhfG | argP, yidZ | 2 | 0.18; 0.15 | 238, 315 |
| pabB-nudL | aaeR, yeiI, dicC, fimZ, argR, dicA | 6 | 0.53; 0.48; 0.37; 0.22; 0.12; 0.11 | 27, 40, 42, 134, 309, 330 |
| pabC-yceG-tmk,pabC-yceG-tmk-holB-ycfH | matA, deoR, aaeR, dicC | 4 | 0.66; 0.19; 0.23; 0.12 | 4, 112, 201, 470 |
| pagP | ebgR, tyrR, nrdR, srlR, yafN, nsrR, gadW, aaeR, cbl, ulaR, yjjQ, yncC, dicA | 13 | 0.12; 0.27; 0.20; 0.10; 0.18; 0.12; 0.13; 0.30; 0.11; 0.15; 0.15; 0.13; 0.12 | 10, 18, 36, 45, 79, 81, 105, 129, 221, 232, 238, 306, 312 |
| pal-ybgF-lysT-valT,pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,pal-ybgF-lysT-valT-lysW-valZ-lysY,pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,pal-ybgF-lysT-valT-lysW-valZ | lldR, sxy, dicC | 3 | 0.14; 0.21; 0.12 | 137, 143, 430 |
| panC | dicA, dicC, ttk | 3 | 0.18; 0.16; 0.11 | 154, 288, 441 |
| panC-panB | yhfR, nac | 2 | 0.16; 0.13 | 13, 324 |
| panD | ybaQ, sxy, yjjQ, glnG, yagI, yncC | 6 | 0.46; 0.39; 0.25; 0.11; 0.13; 0.11 | 30, 47, 106, 113, 153, 385 |
| panM | yeiE, iclR, gcvA, ttk, fimZ | 5 | 0.23; 0.25; 0.13; 0.19; 0.11 | 49, 120, 146, 203, 315 |
| paoD-paoC-paoB-paoA | cpxR, ulaR, argP, yfeC, lldR, yncC, cynR | 7 | 1.00; 0.37; 0.36; 0.12; 0.18; 0.23; 0.10 | 2, 42, 54, 76, 83, 137, 303 |
| parC,plsC-parC | galS, envY, argR, fimZ, nac, ybaQ | 6 | 0.17; 0.11; 0.20; 0.15; 0.17; 0.11 | 22, 119, 144, 210, 220, 525 |
| parE | ttk, nrdR, yafN, sfsB | 4 | 0.28; 0.11; 0.11; 0.14 | 97, 180, 218, 276 |
| parE-yqiA-cpdA | ybcM, ycjW, treR, ttk | 4 | 0.11; 0.13; 0.20; 0.23 | 21, 62, 65, 149 |
| patA | glnG, ttk, dicA | 3 | 0.28; 0.17; 0.13 | 18, 247, 260 |
| patD | uxuR, ypdC, dicA | 3 | 0.26; 0.17; 0.13 | 41, 147, 276 |
| pbl | ydfH, envY, gadW, yagI, tyrR, argP, sfsB, ulaR, aaeR, iclR | 10 | 0.13; 0.28; 0.24; 0.29; 0.17; 0.33; 0.19; 0.16; 0.15; 0.13 | 8, 13, 18, 34, 56, 68, 181, 214, 367, 407 |
| pbpC-yfhM | sfsB, sxy, arsR, dicC | 4 | 0.34; 0.26; 0.16; 0.12 | 74, 95, 248, 461 |
| pbpG | melR, sxy, cadC, ybaQ, galS, dicC, yjjQ, yeiI | 8 | 0.29; 0.27; 0.13; 0.30; 0.11; 0.15; 0.10; 0.11 | 26, 80, 84, 99, 100, 313, 356, 403 |
| pck | ygiT, kdgR, betI, yciT, allR, treR, aaeR, iclR, arsR, ypdC | 10 | 0.15; 0.13; 0.10; 0.11; 0.10; 0.17; 0.33; 0.25; 0.16; 0.12 | 10, 23, 41, 49, 90, 103, 104, 126, 235, 278 |
| pcm-umpG,nlpD-pcm-umpG | exuR, relE, ttk | 3 | 0.14; 0.11; 0.20 | 40, 113, 185 |
| pdhR,pdhR-aceE-aceF-lpd | pdhR, deoR, envY, tyrR, argR, exuR, iclR | 7 | 1.00; 0.31; 0.19; 0.19; 0.34; 0.12; 0.22 | 1, 27, 45, 50, 60, 60, 155 |
| pdxA-surA-lptD,surA-lptD,lptD | yddM, yncC, sxy, argP, ybaQ | 5 | 0.26; 0.17; 0.14; 0.17; 0.11 | 7, 201, 261, 267, 533 |
| pdxH-mliC-anmK,anmK,mliC-anmK | purR, cpxR, cynR, dicA, arsR, ulaR, dicC | 7 | 0.10; 0.16; 0.20; 0.21; 0.13; 0.11; 0.13 | 26, 49, 104, 112, 349, 354, 386 |
| pdxK | ybaQ, iclR | 2 | 0.26; 0.11 | 142, 463 |
| pdxY | tyrR, yagI, ybaQ, yeiI, fimZ | 5 | 0.27; 0.33; 0.21; 0.19; 0.13 | 17, 17, 218, 233, 247 |
| pdxY-tyrS,tyrS | ypdC, ybaQ, uxuR, yagI, argP | 5 | 0.63; 0.33; 0.17; 0.11; 0.13 | 6, 75, 115, 202, 338 |
| pdxY-tyrS-pdxH,tyrS-pdxH | aaeR, dicC | 2 | 0.60; 0.12 | 21, 465 |
| pepA,holC-pepA | envY, dicA | 2 | 0.17; 0.17 | 52, 163 |
| pepB | deoR | 1 | 0.11 | 322 |
| pepD | allR, yciT, yeiI, aaeR | 4 | 0.16; 0.13; 0.15; 0.15 | 25, 31, 299, 378 |
| pepE | dicC | 1 | 0.10 | 523 |
| pepN | argR, ybaQ | 2 | 0.20; 0.23 | 137, 180 |
| pepQ-yigZ,pepQ-yigZ-trkH,pepQ-yigZ-trkH-hemG | tyrR, aaeR, dicC | 3 | 0.13; 0.19; 0.11 | 101, 286, 480 |
| pepT | pdhR, uxuR, treR, yjjQ, yeiI | 5 | 0.12; 0.21; 0.12; 0.15; 0.11 | 67, 77, 179, 234, 415 |
| perR | ybaQ, ybhD, yagI, melR | 4 | 0.58; 0.13; 0.13; 0.12 | 19, 32, 172, 194 |
| pfkA | ypdC, arsR, yagI, iclR, argP | 5 | 0.41; 0.26; 0.18; 0.17; 0.14 | 23, 89, 106, 274, 328 |
| pfkB-ydiZ-yniA,pfkB | cadC, cbl, nac, cynR, ybaQ, yidZ | 6 | 0.79; 0.39; 0.24; 0.13; 0.16; 0.13 | 3, 13, 157, 231, 344, 376 |
| pflA | yafN, dicC, yidZ, arsR, ulaR, cysB, yeiI, ybaQ | 8 | 0.25; 0.31; 0.27; 0.21; 0.16; 0.15; 0.18; 0.17 | 36, 66, 122, 145, 203, 204, 246, 329 |
| pflB | allR, iscR, cusR, aaeR, lldR, fimZ, yidZ | 7 | 0.16; 0.23; 0.11; 0.24; 0.12; 0.11; 0.13 | 22, 31, 51, 181, 216, 294, 380 |
| pflB-focA,focA | yncC, iscR, nrdR, nac, gcvA, iclR | 6 | 0.31; 0.12; 0.12; 0.20; 0.11; 0.15 | 97, 108, 136, 186, 217, 319 |
| pflD-pflC | pdhR, iclR, ulaR | 3 | 0.10; 0.20; 0.10 | 88, 209, 356 |
| pgaD-pgaC-pgaB-pgaA | yjjQ, racR, dgsA, nac, dicC | 5 | 0.41; 0.12; 0.14; 0.18; 0.19 | 29, 39, 66, 208, 236 |
| pgi | gadW, yidZ, argP, deoR | 4 | 0.24; 0.28; 0.25; 0.10 | 24, 111, 141, 346 |
| pgk,fbaA-pgk,mscS-fbaA-pgk | gadW, dicA, treR, yafN, dicC, ybaQ | 6 | 0.18; 0.26; 0.15; 0.14; 0.16; 0.12 | 46, 60, 117, 133, 302, 452 |
| pgk-epd,fbaA-pgk-epd | cysB, betI, hcaR, ypdC, tyrR, dicC, yeiI, arsR, melR, ulaR | 10 | 0.42; 0.12; 0.15; 0.37; 0.17; 0.25; 0.25; 0.20; 0.13; 0.16 | 18, 21, 22, 31, 53, 108, 139, 164, 172, 207 |
| pgl | ycjW, argR, yeiI, arsR, ybaQ, ttk | 6 | 0.27; 0.36; 0.28; 0.14; 0.14; 0.11 | 8, 54, 123, 314, 384, 465 |
| pgpA | matA, pdhR, ycjW, gadW, arsR | 5 | 0.30; 0.22; 0.17; 0.16; 0.14 | 9, 13, 35, 75, 292 |
| pgpB-yciS,pgpB | ybcM, ypdC, yidZ | 3 | 0.17; 0.25; 0.26 | 7, 63, 124 |
| pheL-pheA | deoR, yjiR, yddM, yagI, dicC, iclR | 6 | 0.28; 0.11; 0.14; 0.16; 0.19; 0.14 | 33, 34, 38, 126, 229, 367 |
| pheM-rplT,rplT | yafN, sfsB, ttk, dicC | 4 | 0.23; 0.42; 0.12; 0.10 | 42, 43, 424, 531 |
| pheM-rplT-rpmI-infC,rplT-rpmI-infC,infC | hcaR, ulaR, allR, sxy, yncC, ypdC | 6 | 0.11; 0.27; 0.10; 0.25; 0.21; 0.14 | 44, 71, 95, 101, 154, 215 |
| pheP | marA, arsR, ybaQ | 3 | 0.13; 0.16; 0.11 | 27, 236, 538 |
| pheU | sxy, iclR, yeiE, tyrR, yidZ | 5 | 0.27; 0.27; 0.13; 0.11; 0.20 | 83, 93, 124, 166, 218 |
| pheV | yidZ, yhaJ, ybaQ, rutR, ulaR, iclR | 6 | 0.71; 0.15; 0.28; 0.12; 0.20; 0.23 | 11, 37, 106, 127, 146, 148 |
| phnP-phnO-phnN-phnM-phnL | mraZ, ypdC, uxuR | 3 | 0.25; 0.15; 0.10 | 12, 187, 279 |
| phnP-phnO-phnN-phnM-phnL-phnK-phnJ-phnI-phnH-phnG-phnF-phnD-phnC-phnE | yeiE, yidZ | 2 | 0.11; 0.21 | 161, 196 |
| phoA-psiF | yfeC, envY, nac, aaeR, yjjQ, dicA, ybaQ | 7 | 0.20; 0.11; 0.21; 0.18; 0.12; 0.11; 0.12 | 27, 131, 170, 295, 301, 343, 480 |
| phoB-phoR | sfsB, dgsA | 2 | 0.51; 0.13 | 23, 90 |
| phoE | yeiI, lldR, ypdC, deoR, yncC, fimZ, iclR | 7 | 0.37; 0.17; 0.12; 0.12; 0.13; 0.11; 0.13 | 69, 102, 275, 290, 308, 319, 394 |
| phoH | modE, dicA, nac | 3 | 0.10; 0.11; 0.11 | 26, 339, 384 |
| phoQ | yeiI, yidZ, iclR | 3 | 0.15; 0.14; 0.11 | 294, 330, 464 |
| phoU | yagI, relE | 2 | 0.26; 0.10 | 50, 131 |
| phoU-pstB | cbl, iclR | 2 | 0.26; 0.21 | 34, 183 |
| phoU-pstB-pstA-pstC | rutR, dicC, uxuR, yidZ | 4 | 0.24; 0.35; 0.15; 0.18 | 24, 45, 139, 254 |
| phoU-pstB-pstA-pstC-pstS,pstB-pstA-pstC-pstS,pstA-pstC-pstS,pstS | melR, ybcM, marA, ydjF, racR, deoR, cynR, nac, ybaQ | 9 | 0.57; 0.13; 0.17; 0.15; 0.12; 0.15; 0.14; 0.13; 0.11 | 3, 10, 11, 15, 41, 179, 184, 313, 530 |
| phr | galS, arsR, nrdR, sfsB, yeiI | 5 | 0.13; 0.26; 0.12; 0.14; 0.12 | 54, 93, 127, 281, 365 |
| pinE | ybcM, mraZ, sfsB | 3 | 0.21; 0.11; 0.14 | 4, 116, 277 |
| pinH | ybaQ, sfsB, nrdR, yjjQ, treR, argP, argR | 7 | 0.64; 0.24; 0.11; 0.19; 0.10; 0.14; 0.11 | 14, 125, 165, 180, 221, 334, 341 |
| pinQ | ompR, cadC, tyrR, basR, yafN, nac, yeiI | 7 | 0.11; 0.18; 0.17; 0.10; 0.17; 0.15; 0.12 | 21, 38, 58, 71, 94, 272, 396 |
| pinR | basR, cadC, yjjQ, tyrR, nrdR, yafN, nac, yeiI | 8 | 0.14; 0.18; 0.38; 0.17; 0.16; 0.17; 0.15; 0.12 | 32, 40, 41, 59, 78, 93, 273, 396 |
| pitA | yafN, treR, yeiI | 3 | 0.14; 0.13; 0.13 | 129, 146, 338 |
| pitB | dicC, cadC, cynR, yncC, sxy, argR, yidZ | 7 | 0.30; 0.14; 0.18; 0.22; 0.17; 0.13; 0.14 | 71, 73, 120, 141, 201, 283, 343 |
| pka | yfeC, galS, sxy, uxuR, ypdC | 5 | 0.12; 0.10; 0.23; 0.16; 0.14 | 77, 107, 117, 129, 198 |
| plaP | marA, matA, yfeC, glpR, rutR, sfsB, yeiI | 7 | 0.23; 0.29; 0.22; 0.10; 0.11; 0.18; 0.10 | 6, 12, 16, 18, 134, 199, 466 |
| plaP-yoeI | marA, matA, glpR, yfeC, rutR, sfsB, yeiI | 7 | 0.23; 0.29; 0.10; 0.22; 0.11; 0.18; 0.10 | 5, 12, 18, 19, 133, 198, 465 |
| pldA,pldA-recQ | dicA, dicC, yjjQ, sxy, nac, ttk | 6 | 0.30; 0.34; 0.21; 0.13; 0.13; 0.12 | 30, 53, 162, 298, 322, 411 |
| pldB-yigL | ycjW, iclR, lldR, deoR | 4 | 0.22; 0.19; 0.10; 0.11 | 20, 217, 272, 329 |
| pliG | zur, dicA, nagC, dicC, cpxR, sxy, ulaR, melR | 8 | 0.34; 0.38; 0.12; 0.27; 0.12; 0.20; 0.18; 0.11 | 3, 15, 46, 92, 103, 159, 176, 221 |
| plsB | yhjC, uxuR, argR, dicA, tyrR | 5 | 0.13; 0.21; 0.27; 0.23; 0.13 | 14, 76, 81, 93, 95 |
| plsX-fabH-fabD-fabG | dgoR, yagI, yafN, uxuR, yjjQ | 5 | 0.10; 0.26; 0.13; 0.13; 0.14 | 8, 43, 165, 177, 253 |
| plsY | uxuR, yidZ, sfsB | 3 | 0.19; 0.13; 0.10 | 88, 389, 395 |
| pmbA | fimZ, arsR, tyrR, ybaQ | 4 | 0.41; 0.35; 0.15; 0.25 | 37, 44, 73, 149 |
| pmrD | ybaQ, dicA, sfsB | 3 | 0.28; 0.15; 0.12 | 109, 213, 349 |
| pncA | dicA, betI | 2 | 0.42; 0.11 | 12, 32 |
| pncB | yidZ, argR, ybaQ | 3 | 0.37; 0.20; 0.23 | 57, 138, 181 |
| pncC,recX-recA-pncC,recA-pncC | galS, ulaR, mraZ, gadW, sfsB, yeiE, iclR, dicC | 8 | 0.19; 0.24; 0.12; 0.12; 0.23; 0.10; 0.12; 0.11 | 15, 89, 109, 123, 136, 189, 421, 492 |
| pnp | gcvA | 1 | 0.27 | 39 |
| pnp-rpsO-truB-rbfA-infB-nusA-rimP-metY,infB-nusA-rimP-metY,nusA-rimP-metY,metY | ycjW, argR, relE, nac, ulaR | 5 | 0.44; 0.68; 0.27; 0.37; 0.12 | 2, 16, 31, 65, 320 |
| pntB-pntA | cynR, gcvA, glnG, yjjQ, argP, yeiI, nac, dicA | 8 | 0.33; 0.16; 0.12; 0.23; 0.22; 0.20; 0.15; 0.12 | 29, 100, 101, 132, 174, 208, 269, 290 |
| pnuC | ybaQ, nrdR, yeiI, yafN, argR | 5 | 0.32; 0.15; 0.20; 0.11; 0.10 | 83, 95, 212, 232, 359 |
| polA-spf,polA | yddM, melR, yidZ, ybaQ, gcvA | 5 | 0.12; 0.21; 0.25; 0.24; 0.12 | 56, 62, 131, 175, 178 |
| polB | yidZ, ybaQ, argR | 3 | 0.38; 0.35; 0.14 | 56, 70, 270 |
| potD-potC-potB-potA,potC-potB-potA | pdhR, argP, uxuR, treR, yjjQ, yeiI | 6 | 0.12; 0.32; 0.21; 0.11; 0.15; 0.11 | 68, 74, 78, 191, 233, 415 |
| potE-speF-speFL | yeiI, argP, arsR | 3 | 0.46; 0.12; 0.12 | 45, 361, 375 |
| potF-potG-potH,potF-potG,potF-potG-potH-potI | ypdC, cbl, arsR, lldR, relE, aaeR, nrdR, deoR, yeiI | 9 | 0.44; 0.20; 0.27; 0.16; 0.12; 0.33; 0.13; 0.18; 0.18 | 14, 75, 80, 106, 106, 112, 117, 121, 244 |
| poxB,ybjT-ltaE-poxB | cysB, cpxR, yidZ, deoR | 4 | 0.37; 0.12; 0.21; 0.11 | 25, 121, 183, 327 |
| poxB-hcr-hcp,hcr-hcp | nsrR, argR, rutR | 3 | 0.55; 0.32; 0.14 | 2, 66, 86 |
| ppa | galR, iscR, tyrR, deoR, lldR | 5 | 0.12; 0.24; 0.19; 0.14; 0.11 | 14, 29, 44, 204, 255 |
| ppc | nac, cynR, argP, yagI, ttk | 5 | 0.37; 0.23; 0.29; 0.17; 0.12 | 64, 72, 101, 118, 430 |
| ppdC | ybcM, argR, aaeR | 3 | 0.11; 0.14; 0.17 | 19, 263, 328 |
| pphB | modE, nac, yncC, cysB | 4 | 0.11; 0.25; 0.21; 0.12 | 19, 141, 151, 294 |
| ppiC | yidZ, exuR, melR, fimZ, dicC, argR | 6 | 0.58; 0.22; 0.13; 0.17; 0.20; 0.16 | 15, 19, 159, 176, 210, 222 |
| ppiD-ybaV-fadM,ppiD | gadW, sxy, ybaQ | 3 | 0.12; 0.19; 0.21 | 106, 172, 223 |
| ppk,ppk-ppx | galS, treR, ybaQ, envY, sxy, dicC | 6 | 0.19; 0.29; 0.41; 0.14; 0.18; 0.18 | 16, 24, 49, 79, 186, 257 |
| pppA | gcvA, ttk | 2 | 0.20; 0.17 | 68, 244 |
| ppsA | lldR, pdhR, yncC, hcaR, dgsA, sfsB | 6 | 0.52; 0.24; 0.57; 0.11; 0.14; 0.16 | 4, 10, 32, 47, 72, 236 |
| pptA | trpR, nsrR, dicA, ttk, arsR | 5 | 0.14; 0.17; 0.24; 0.27; 0.18 | 20, 26, 77, 114, 205 |
| pqiA-pqiB-pqiC | ydjF, cpxR, yhaJ, deoR | 4 | 0.15; 0.17; 0.14; 0.10 | 16, 46, 47, 367 |
| pqiC | melR, mraZ, ybaQ | 3 | 0.21; 0.11; 0.16 | 59, 114, 349 |
| pqqL | yeiI, yjjQ, yncC, dicC | 4 | 0.30; 0.17; 0.15; 0.11 | 105, 203, 246, 500 |
| prc-proQ | yafN, glnG, sxy, ybaQ | 4 | 0.17; 0.11; 0.13; 0.17 | 97, 120, 276, 314 |
| prc-proQ-msrC,msrC | cynR, deoR, yafN, dicA, ybaQ | 5 | 0.25; 0.20; 0.17; 0.19; 0.11 | 54, 95, 99, 125, 527 |
| preT-preA | yncC, lldR, cbl, deoR, arsR, dicA, yjjQ, cysB | 8 | 0.47; 0.23; 0.22; 0.24; 0.31; 0.25; 0.16; 0.14 | 44, 49, 56, 61, 65, 73, 220, 246 |
| prfC | fimZ, ycjW, rutR, dicC | 4 | 0.56; 0.19; 0.15; 0.27 | 18, 25, 65, 99 |
| priA | nagC, galS, yeiI, yidZ | 4 | 0.10; 0.10; 0.28; 0.23 | 78, 101, 121, 155 |
| prkB | yeiI | 1 | 0.31 | 101 |
| prlF-yhaV | cynR, glnG, sxy, dicC | 4 | 0.46; 0.28; 0.41; 0.24 | 7, 16, 42, 120 |
| proA-thrW | allR, dgsA, ypdC, yidZ | 4 | 0.17; 0.19; 0.14; 0.16 | 21, 26, 210, 299 |
| proB,proB-proA,proB-proA-thrW | yeiI, lldR, ypdC, deoR, yncC, fimZ, iclR | 7 | 0.37; 0.17; 0.12; 0.12; 0.13; 0.11; 0.13 | 69, 101, 275, 290, 308, 319, 394 |
| proC | yidZ, argP, ttk, iclR, yafN, yncC, dicC | 7 | 0.39; 0.35; 0.32; 0.28; 0.16; 0.18; 0.17 | 50, 60, 73, 79, 118, 191, 272 |
| proK | ypdC, arsR, ttk | 3 | 0.19; 0.11; 0.11 | 124, 434, 458 |
| proL | nagC, ybaQ, sxy, lldR | 4 | 0.10; 0.22; 0.14; 0.10 | 68, 210, 257, 278 |
| proP,proP-pmrR | yeiE, tyrR, aaeR | 3 | 0.33; 0.15; 0.31 | 24, 70, 127 |
| proS-tsaA-rcsF,tsaA-rcsF | cadC, ebgR, yheO, melR, cynR | 5 | 0.80; 0.11; 0.18; 0.19; 0.18 | 2, 13, 29, 74, 121 |
| proV-proW-proX | modE, melR, yhaJ, argR, ypdC, yidZ, yncC, tyrR, yjjQ, dicC, iclR | 11 | 0.11; 0.25; 0.14; 0.33; 0.21; 0.25; 0.20; 0.10; 0.14; 0.15; 0.11 | 13, 42, 43, 62, 97, 132, 165, 171, 265, 307, 460 |
| proY | yafN, dicC, cynR, cysB | 4 | 0.17; 0.23; 0.16; 0.12 | 96, 135, 149, 313 |
| prpB-prpC-prpD-prpE | ygiT, nrdR, sxy, iclR | 4 | 0.11; 0.17; 0.11; 0.12 | 40, 64, 346, 452 |
| prpR | ygiT, yncC, nrdR, sxy, iclR, dicC | 6 | 0.11; 0.47; 0.17; 0.11; 0.12; 0.11 | 41, 45, 65, 347, 452, 504 |
| psd-rsgA,rsgA | tyrR, iclR, yafN | 3 | 0.33; 0.20; 0.10 | 9, 189, 251 |
| psiE | argP, yjjQ, yncC, ybaQ | 4 | 0.24; 0.21; 0.14; 0.14 | 160, 160, 287, 401 |
| psiF | nrdR, deoR, lldR, sfsB | 4 | 0.16; 0.17; 0.11; 0.14 | 77, 146, 236, 273 |
| pspA-pspB-pspC-pspD-pspE | pspF, yagI, yidZ | 3 | 1.00; 0.32; 0.12 | 1, 18, 413 |
| pspB-pspC-pspD-pspE,pspB-pspC-pspD | arsR, ttk | 2 | 0.13; 0.11 | 341, 473 |
| pspE | yeiI, purR, yhfR, ttk, yheO, fimZ, cbl | 7 | 0.85; 0.10; 0.12; 0.29; 0.10; 0.20; 0.12 | 6, 23, 30, 95, 122, 144, 205 |
| pspF | pspF, yagI | 2 | 1.00; 0.32 | 2, 18 |
| pspG | pspF, treR, ybaQ | 3 | 0.98; 0.21; 0.12 | 4, 60, 493 |
| pspH | pspF, asnC, cysB, cbl, ttk | 5 | 0.98; 0.11; 0.34; 0.20; 0.12 | 3, 21, 32, 71, 406 |
| pssA,pssA-yfiM | yegW, rutR, ybaQ, yeiI | 4 | 0.10; 0.16; 0.30; 0.11 | 38, 62, 96, 404 |
| pssL | yegW, rutR, ybaQ | 3 | 0.10; 0.16; 0.30 | 39, 62, 96 |
| psuG-psuK | cynR, allR, cpxR, yeiI, fimZ, sfsB, deoR | 7 | 0.56; 0.11; 0.14; 0.30; 0.20; 0.14; 0.11 | 3, 72, 80, 102, 146, 278, 328 |
| psuT | yddM, cusR, dgsA, pdhR, yeiI, yidZ, treR | 7 | 0.18; 0.13; 0.13; 0.10; 0.26; 0.22; 0.11 | 20, 35, 79, 89, 133, 182, 199 |
| pta | yddM, tyrR, yncC | 3 | 0.19; 0.12; 0.11 | 15, 120, 387 |
| ptrA,recD-recB-ptrA | nac, yidZ | 2 | 0.12; 0.11 | 357, 455 |
| ptrB | gcvA, ypdC | 2 | 0.20; 0.12 | 65, 254 |
| ptsG | dgsA, melR, gcvA, dicA, deoR | 5 | 0.77; 0.19; 0.11; 0.14; 0.11 | 2, 75, 201, 233, 315 |
| ptsH-ptsI-crr,ptsH,ptsH-ptsI | dgsA, iscR, ypdC, deoR, argP | 5 | 1.00; 1.00; 0.16; 0.12; 0.13 | 1, 1, 159, 265, 350 |
| purA-nsrR,purA | purR, yfeC, uxuR, rutR, ulaR, cysB, sfsB | 7 | 0.16; 0.21; 0.31; 0.10; 0.19; 0.17; 0.17 | 5, 21, 24, 151, 156, 167, 204 |
| purB-hflD | uxuR, sxy, yncC | 3 | 0.11; 0.15; 0.11 | 238, 250, 361 |
| purB-hflD-mnmA,mnmA | ypdC, argR, cbl, yagI, cysB | 5 | 0.22; 0.22; 0.17; 0.15; 0.11 | 89, 112, 116, 134, 350 |
| purD-purH | deoR, ypdC, ybaQ | 3 | 0.15; 0.12; 0.13 | 185, 271, 436 |
| purF-cvpA-dedD,cvpA-dedD,dedD | ttk, yjjQ | 2 | 0.18; 0.12 | 238, 303 |
| purK-purE | pdhR, arsR | 2 | 0.13; 0.17 | 52, 222 |
| purK-purE-lpxH-ppiB,lpxH-ppiB,ppiB | zur, iscR, nac, nrdR, yeiI, aaeR | 6 | 0.23; 0.26; 0.40; 0.17; 0.12; 0.11 | 8, 22, 41, 70, 367, 507 |
| purL | purR, nac, dicC | 3 | 0.11; 0.24; 0.13 | 22, 143, 413 |
| purM-purN | sfsB, cynR, sxy, ttk, nac | 5 | 0.24; 0.17; 0.19; 0.18; 0.13 | 121, 127, 166, 232, 307 |
| purN,purN-ppk | yafN, allR, arsR | 3 | 0.63; 0.24; 0.19 | 3, 4, 179 |
| purR | galR, pepA, pdhR, nrdR | 4 | 0.15; 0.12; 0.10; 0.11 | 9, 14, 92, 168 |
| purT | lexA, ycjZ, ycjW, dicC, yafN, ulaR, ttk | 7 | 0.12; 0.11; 0.12; 0.21; 0.10; 0.11; 0.12 | 18, 22, 68, 197, 236, 341, 408 |
| putA | racR, tyrR, deoR, treR, yncC, iclR, aaeR | 7 | 0.10; 0.11; 0.15; 0.11; 0.14; 0.15; 0.15 | 52, 153, 172, 195, 274, 328, 349 |
| putP | racR, yncC, tyrR, deoR, treR, iclR, aaeR | 7 | 0.10; 0.41; 0.11; 0.15; 0.11; 0.15; 0.15 | 51, 61, 153, 172, 194, 329, 351 |
| puuC-puuB-puuE | arsR, yncC, gadW, ttk | 4 | 0.31; 0.31; 0.14; 0.23 | 64, 92, 97, 155 |
| puuD-puuR,puuD-puuR-puuC-puuB-puuE | yagI, yeiE, yafN, argR, ybaQ | 5 | 0.50; 0.11; 0.12; 0.13; 0.11 | 4, 167, 178, 288, 500 |
| puuP-puuA,puuP-puuA-ymjE,puuA | yagI, glnG, yeiE, yafN, argR, ybaQ | 6 | 0.50; 0.14; 0.11; 0.12; 0.13; 0.11 | 3, 80, 167, 179, 288, 501 |
| puuP-ymjE | yhaJ, cbl, arsR | 3 | 0.22; 0.10; 0.15 | 17, 260, 264 |
| puuR-puuC | sxy, melR, ttk | 3 | 0.24; 0.11; 0.19 | 109, 199, 205 |
| pykA | ypdC, envY | 2 | 0.23; 0.14 | 77, 80 |
| pykF | kdgR, cynR, cysB, sxy, ybaQ | 5 | 0.15; 0.19; 0.13; 0.12; 0.17 | 17, 112, 268, 308, 330 |
| pyrD | sxy, yidZ, iclR, cysB, lldR, ttk, yeiI | 7 | 0.52; 0.35; 0.29; 0.19; 0.11; 0.16; 0.11 | 24, 70, 74, 141, 248, 266, 401 |
| pyrE-rph,rph | relE, sfsB, nac, yidZ, ttk | 5 | 0.25; 0.28; 0.14; 0.13; 0.11 | 34, 102, 297, 377, 432 |
| pyrF-yciH | uxuR, sxy, cysB, fimZ, dicA | 5 | 0.41; 0.19; 0.14; 0.11; 0.10 | 13, 164, 247, 292, 347 |
| pyrG-mazG-mazF-mazE,mazG-mazF-mazE | ttk, zur, yhfR, sxy, nrdR, dicC, ypdC | 7 | 0.95; 0.10; 0.11; 0.41; 0.10; 0.21; 0.14 | 2, 20, 40, 41, 191, 194, 202 |
| pyrH-frr-dxr,pyrH-frr,pyrH | mraZ, exuR, lldR | 3 | 0.18; 0.11; 0.16 | 36, 90, 108 |
| qorA | yncC | 1 | 0.67 | 22 |
| qseB-qseC | argP, yafN, arsR | 3 | 0.39; 0.12; 0.11 | 39, 203, 411 |
| queA-tgt-yajC,queA | gcvA, sxy | 2 | 0.12; 0.17 | 190, 207 |
| queC | sfsB, aaeR | 2 | 0.19; 0.10 | 178, 528 |
| queD,queD-ygcN-ygcO | yeiE, gadW, dicC, sfsB, cbl, nac | 6 | 0.30; 0.21; 0.41; 0.35; 0.16; 0.14 | 25, 31, 32, 69, 122, 304 |
| queE | allR, nac, sfsB, cysB, yafN, dicA, yidZ, dicC, arsR | 9 | 0.17; 0.32; 0.29; 0.19; 0.14; 0.12; 0.14; 0.14; 0.10 | 18, 81, 99, 136, 139, 297, 334, 349, 456 |
| queF,queF-ygdH | aaeR, arsR, sfsB, ybaQ | 4 | 0.28; 0.17; 0.14; 0.14 | 143, 220, 282, 416 |
| queG | relE, yidZ, uxuR, aaeR, ybaQ | 5 | 0.10; 0.25; 0.11; 0.17; 0.16 | 133, 135, 240, 320, 336 |
| quuD | yafN, argP | 2 | 0.16; 0.17 | 100, 261 |
| quuQ-ydfU | marA, yafN, ybaQ, sxy | 4 | 0.14; 0.12; 0.19; 0.13 | 26, 176, 270, 300 |
| racC | yncC, tyrR, aaeR, dicA | 4 | 0.36; 0.15; 0.17; 0.11 | 77, 78, 326, 334 |
| racR | racR, ydaS, cynR, yagI, yeiE, yjjQ, ttk, ulaR, iclR, dicC | 10 | 0.61; 1.00; 0.21; 0.18; 0.13; 0.20; 0.21; 0.12; 0.13; 0.12 | 2, 2, 82, 107, 134, 174, 179, 308, 406, 456 |
| radA-nadR | tyrR, ttk | 2 | 0.17; 0.19 | 65, 202 |
| raiA,raiA-pheL | yeaT, cadC, deoR, envY, yagI, ulaR, iclR | 7 | 0.14; 0.19; 0.28; 0.20; 0.16; 0.12; 0.14 | 4, 29, 34, 36, 127, 293, 366 |
| ralA | srlR, argP, ulaR | 3 | 0.13; 0.35; 0.13 | 27, 57, 286 |
| rarD | yjjQ, dicC | 2 | 0.21; 0.11 | 163, 489 |
| rarD-yigI,yigF-yigG-rarD-yigI,yigI | dicA, dicC, basR, sxy, nac, ttk | 6 | 0.30; 0.34; 0.11; 0.13; 0.13; 0.12 | 29, 52, 65, 298, 321, 410 |
| ratB | betI, yagI, iscR, aaeR | 4 | 0.13; 0.26; 0.13; 0.10 | 15, 48, 97, 529 |
| ratB-ratA | yagI, gadW, yeiI, ttk, arsR, aaeR | 6 | 0.26; 0.12; 0.28; 0.16; 0.11; 0.13 | 46, 111, 125, 273, 409, 445 |
| rayT | sxy, glnG, arsR, yidZ, ypdC, nac | 6 | 0.23; 0.11; 0.19; 0.18; 0.12; 0.12 | 126, 130, 173, 252, 268, 367 |
| rbn | cysB, sfsB | 2 | 0.27; 0.15 | 54, 270 |
| rbsB-rbsK-rbsR | cusR, sfsB, yagI, iclR, yeiI, ybaQ | 6 | 0.12; 0.25; 0.10; 0.18; 0.12; 0.11 | 49, 114, 241, 245, 376, 505 |
| rbsD-rbsA-rbsC-rbsB,rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | mraZ, ybaQ, yagI, ypdC, aaeR | 5 | 0.17; 0.44; 0.12; 0.15; 0.14 | 37, 37, 180, 194, 391 |
| rbsK-rbsR | sfsB | 1 | 0.23 | 137 |
| rclC-rclB | hcaR, ulaR, matA, dgsA, ypdC, cysB, deoR | 7 | 0.19; 0.25; 0.12; 0.11; 0.18; 0.18; 0.11 | 15, 86, 91, 128, 138, 154, 325 |
| rclC-rclB-rclA | ykgD, dicC, cadC, gcvA, cpxR, ybaQ, aaeR | 7 | 1.00; 0.50; 0.16; 0.20; 0.12; 0.20; 0.13 | 2, 15, 45, 63, 96, 231, 441 |
| rcnA-rcnB | ypdC, arsR | 2 | 0.21; 0.16 | 106, 253 |
| rcnB | fimZ, matA, treR, sfsB, cysB, arsR, yncC | 7 | 0.68; 0.12; 0.12; 0.19; 0.15; 0.13; 0.10 | 11, 100, 162, 183, 213, 361, 411 |
| rcsA | argP, aaeR, ypdC, yeiE, cynR, arsR, dicC, yjjQ | 8 | 0.58; 0.38; 0.21; 0.13; 0.13; 0.15; 0.17; 0.10 | 15, 74, 92, 120, 229, 263, 281, 359 |
| rcsB | nsrR, ycjW, yafN, gcvA | 4 | 0.14; 0.15; 0.15; 0.12 | 40, 47, 120, 159 |
| rcsC | lldR, uxuR | 2 | 0.12; 0.11 | 202, 245 |
| rcsD-rcsB | mlrA, yeiI, yhjC, dicA, marA, deoR, argP, cpxR, dicC | 9 | 0.37; 0.64; 0.11; 0.28; 0.10; 0.23; 0.30; 0.11; 0.12 | 2, 21, 26, 41, 51, 68, 89, 128, 433 |
| rcsF-metQ-metI-metN,metQ-metI-metN | rutR, uxuR, yjjQ, argR | 4 | 0.20; 0.23; 0.20; 0.11 | 38, 60, 166, 343 |
| rdgB-yggW | lldR, yeiI, yagI, sxy, yidZ | 5 | 0.25; 0.28; 0.15; 0.10; 0.12 | 39, 117, 131, 359, 427 |
| rdgC | envY, aaeR | 2 | 0.13; 0.19 | 87, 287 |
| rdlA | gcvA, nagC, treR, ulaR | 4 | 0.29; 0.10; 0.12; 0.11 | 31, 73, 163, 337 |
| rdlB | gcvA, argP | 2 | 0.25; 0.22 | 50, 175 |
| rdlC | gcvA, trpR, argP, yidZ | 4 | 0.29; 0.10; 0.20; 0.12 | 31, 35, 208, 425 |
| rdlD | ybaQ | 1 | 0.16 | 351 |
| recA,recX-recA | yjiR, lexA, ybhD, argR, uxuR, yafN, yeiE, ypdC, yidZ | 9 | 0.16; 0.15; 0.11; 0.44; 0.18; 0.16; 0.10; 0.12; 0.14 | 7, 12, 37, 39, 99, 109, 188, 288, 339 |
| recA-pncC-mltB,mltB | srlR, ulaR, cysB, ybaQ | 4 | 1.00; 0.17; 0.16; 0.12 | 2, 196, 198, 460 |
| recB | iclR, treR, sfsB | 3 | 0.45; 0.25; 0.10 | 20, 36, 397 |
| recC | ybcM, treR, lldR, argR, aaeR | 5 | 0.11; 0.18; 0.12; 0.14; 0.17 | 20, 93, 212, 264, 327 |
| recC-ppdC-ygdB-ppdB-ppdA | sxy, gcvA, nac, arsR | 4 | 0.58; 0.13; 0.11; 0.11 | 12, 150, 389, 435 |
| recF | ypdC | 1 | 0.40 | 24 |
| recF-dnaN | matA, ulaR, ttk, arsR | 4 | 0.18; 0.29; 0.20; 0.12 | 37, 62, 191, 372 |
| recF-dnaN-dnaA,dnaN-dnaA | cbl, ypdC, sxy, argR, yjjQ | 5 | 0.10; 0.12; 0.13; 0.13; 0.12 | 249, 256, 274, 304, 306 |
| recJ-dsbC,prfB-recJ-dsbC,dsbC | yidZ, envY, yafN, yeiI, cpxR, lldR, yagI | 7 | 0.70; 0.22; 0.25; 0.38; 0.12; 0.15; 0.15 | 12, 27, 38, 68, 100, 135, 136 |
| recJ-dsbC-xerD,xerD,dsbC-xerD | ulaR, melR, yafN, ybaQ | 4 | 0.19; 0.12; 0.11; 0.17 | 163, 189, 226, 321 |
| recN-bamE,recN | lexA, yafN | 2 | 1.00; 0.12 | 1, 197 |
| recQ,recQ-rhtC | mraZ, ybaQ, yidZ, yncC, cysB, sfsB, dicA | 7 | 0.19; 0.40; 0.38; 0.35; 0.20; 0.18; 0.14 | 26, 51, 55, 81, 122, 185, 239 |
| relA,mazE-relA,mazG-mazF-mazE-relA,mazF-mazE-relA | yddM, yafN, yhfR, exuR, matA | 5 | 0.24; 0.33; 0.14; 0.16; 0.12 | 9, 15, 18, 33, 110 |
| rem | yeiI, yfeC, yhaJ, yeiE, iclR, dicA, dicC | 7 | 0.96; 0.30; 0.13; 0.16; 0.24; 0.14; 0.17 | 2, 8, 50, 97, 131, 238, 265 |
| rem-hokD-relE-relB,hokD-relE-relB,relE-relB | tyrR, gadW, ybaQ, yjjQ | 4 | 0.23; 0.23; 0.17; 0.10 | 22, 27, 309, 362 |
| renD | yeaM, deoR, sfsB, dicC | 4 | 0.17; 0.16; 0.16; 0.12 | 3, 154, 244, 419 |
| rep | envY, dicA, argR | 3 | 0.12; 0.18; 0.16 | 97, 144, 220 |
| rfaH | aaeR | 1 | 0.11 | 511 |
| rfbD-rfbB-wcaN,wcaN | yhaJ, cbl, iscR, aaeR, nac | 5 | 0.26; 0.27; 0.15; 0.38; 0.23 | 14, 29, 59, 75, 163 |
| rhaD | yeiE, mraZ, yeiI, ttk, yncC | 5 | 0.23; 0.13; 0.27; 0.17; 0.12 | 51, 86, 126, 252, 334 |
| rhaD-rhaA-rhaB | yeiI, yidZ, gcvA, cysB | 4 | 0.54; 0.40; 0.18; 0.11 | 26, 43, 81, 351 |
| rhaM | ttk | 1 | 0.14 | 332 |
| rhaS-rhaR | yeiI, yidZ, gcvA, cysB | 4 | 0.54; 0.40; 0.18; 0.11 | 27, 42, 80, 334 |
| rhaT | iscR, betI, aaeR | 3 | 0.27; 0.10; 0.31 | 17, 37, 116 |
| rhlE | ybiH, yciT, fimZ, relE, iscR, cbl, argR | 7 | 1.00; 0.19; 0.56; 0.12; 0.12; 0.12; 0.13 | 2, 10, 20, 95, 100, 199, 301 |
| rhmA-rhmT | argP | 1 | 0.18 | 237 |
| rhmA-rhmT-rhmD-yfaX,rhmD-yfaX | yheO, allR, ybaQ, dgsA, yidZ, deoR, sxy | 7 | 0.31; 0.12; 0.27; 0.10; 0.18; 0.12; 0.10 | 8, 63, 111, 156, 247, 279, 350 |
| rhoL-rho,rhoL-rho-wecA,rhoL-rho-wecA-wzzE,rhoL | arsR, relE, ybaQ, yagI, uxuR, dicC | 6 | 0.34; 0.16; 0.27; 0.12; 0.12; 0.12 | 48, 69, 116, 200, 228, 441 |
| rhsA-yibA | nagC, basR, cysB | 3 | 0.17; 0.10; 0.14 | 17, 69, 243 |
| rhsB | sxy, yncC | 2 | 0.44; 0.15 | 32, 256 |
| rhsC-ybfB | basR, ulaR, argR, nac, gcvA, ybaQ | 6 | 0.13; 0.37; 0.19; 0.20; 0.12; 0.18 | 35, 44, 155, 178, 185, 277 |
| rhsD-ybbC-rhsH-ybbD | iclR, dicA | 2 | 0.23; 0.16 | 144, 183 |
| rhsE-ydcD | cadC, fimZ, ycjZ, treR, melR, dgsA, cynR, argP | 8 | 0.59; 0.54; 0.10; 0.22; 0.19; 0.10; 0.15; 0.10 | 5, 22, 35, 50, 83, 149, 174, 443 |
| rhsJ | ycjZ, sxy, yeiI | 3 | 0.16; 0.17; 0.10 | 9, 199, 441 |
| rhsO-ybfC | glnG, argP, tyrR, cysB, yncC, nac, dicC | 7 | 0.22; 0.33; 0.10; 0.15; 0.16; 0.16; 0.16 | 26, 66, 175, 221, 229, 240, 296 |
| rhtA | allR, yhfR, melR, nac, yjjQ, ybaQ, argP, yidZ, ulaR | 9 | 0.23; 0.11; 0.19; 0.30; 0.18; 0.19; 0.16; 0.14; 0.11 | 5, 37, 85, 96, 197, 248, 281, 327, 346 |
| rhtB | ycjW, iclR, lldR | 3 | 0.22; 0.19; 0.10 | 19, 217, 272 |
| rhtC | allR, lldR, iclR | 3 | 0.13; 0.11; 0.12 | 51, 231, 425 |
| ribA | ybcM, ypdC, tyrR, yidZ | 4 | 0.17; 0.25; 0.15; 0.26 | 6, 62, 74, 123 |
| ribB | iscR, yjjQ, ttk, fimZ, dicC | 5 | 0.38; 0.31; 0.21; 0.12; 0.15 | 9, 80, 181, 285, 311 |
| ribC | gcvA, yidZ, dicC | 3 | 0.26; 0.21; 0.14 | 48, 194, 336 |
| ribE-nusB-thiL,ribE-nusB-thiL-pgpA | glnG, yagI, iclR, yeiI, ybaQ | 5 | 0.19; 0.24; 0.16; 0.11; 0.11 | 41, 55, 298, 433, 536 |
| ribF-ileS,ribF-ileS-lspA-fkpB-ispH | tyrR, gcvA, argP, nrdR | 4 | 0.19; 0.15; 0.25; 0.11 | 47, 120, 147, 171 |
| ridA | nsrR, melR, yjjQ, ttk, sxy, aaeR | 6 | 0.12; 0.19; 0.13; 0.15; 0.10; 0.11 | 72, 82, 285, 308, 352, 517 |
| ridA-pyrI-pyrB | argR, argP, ypdC, arsR, nac | 5 | 0.66; 0.35; 0.21; 0.16; 0.14 | 20, 59, 100, 231, 277 |
| ridA-pyrI-pyrB-pyrL | argR, argP, ypdC, arsR, nac | 5 | 0.66; 0.35; 0.21; 0.16; 0.14 | 20, 58, 101, 231, 277 |
| rihB | arsR, envY, ypdC, aaeR, dicA, yidZ | 6 | 0.39; 0.19; 0.18; 0.25; 0.12; 0.14 | 32, 39, 134, 174, 286, 347 |
| rihC,rihC-dapB | nsrR, allR, cbl, arsR | 4 | 0.13; 0.11; 0.11; 0.10 | 58, 77, 215, 447 |
| rimJ-yceH-yceM,rimJ-yceH-yceM-murJ,rimJ | yhaJ, cysB, yeiI, yjjQ, ybaQ | 5 | 0.10; 0.20; 0.22; 0.17; 0.11 | 89, 117, 182, 201, 503 |
| rimK-ybjN | yncC, ypdC | 2 | 0.26; 0.17 | 119, 151 |
| rimL | yafN, sxy | 2 | 0.16; 0.23 | 111, 112 |
| rimO | aaeR, cbl | 2 | 0.87; 0.25 | 6, 38 |
| rlmA | yciT, yeiE, yncC, sxy | 4 | 0.13; 0.14; 0.19; 0.16 | 28, 117, 175, 232 |
| rlmE-greA,greA | treR, exuR, dicA, yncC | 4 | 0.33; 0.12; 0.11; 0.13 | 16, 64, 328, 328 |
| rlmF | yhjC, yhaJ, iclR, gadW, ypdC, sxy, yjjQ | 7 | 0.11; 0.15; 0.34; 0.16; 0.16; 0.15; 0.13 | 24, 41, 45, 68, 164, 246, 286 |
| rlmG | purR, glnG, sxy, yjjQ | 4 | 0.11; 0.21; 0.23; 0.10 | 19, 29, 122, 350 |
| rlmH-rsfS-cobC-nadD,nadD | lldR, pdhR, nac, envY, yafN, ttk | 6 | 0.38; 0.12; 0.26; 0.10; 0.11; 0.16 | 11, 64, 126, 144, 215, 285 |
| rlmJ-gor,rlmJ-gor-agrA,rlmJ | yidZ, lldR, nrdR, uxuR, ybaQ | 5 | 0.28; 0.15; 0.10; 0.11; 0.19 | 110, 124, 203, 236, 251 |
| rlmL,rlmL-uup | glpR, cysB, yafN, fimZ, nac | 5 | 0.15; 0.38; 0.15; 0.19; 0.13 | 6, 23, 127, 158, 335 |
| rlmM | dicC, dicA | 2 | 0.44; 0.20 | 25, 122 |
| rlmM-ygdD,ygdD | cpxR, galS, dicA, ypdC | 4 | 0.19; 0.13; 0.20; 0.14 | 31, 53, 123, 205 |
| rlmM-ygdD-gcvA,gcvA,ygdD-gcvA | gcvA, galS, tyrR, dgsA | 4 | 0.30; 0.15; 0.17; 0.11 | 26, 32, 63, 121 |
| rluA-rapA,rapA | relE, uxuR, ttk, yidZ | 4 | 0.11; 0.14; 0.15; 0.10 | 119, 173, 301, 494 |
| rluB | cusR, yhaJ, dicA, tyrR, mraZ, sfsB, yeiI, dicC, cynR, yncC | 10 | 0.14; 0.13; 0.22; 0.13; 0.12; 0.26; 0.27; 0.23; 0.11; 0.12 | 29, 49, 95, 96, 99, 107, 127, 139, 265, 340 |
| rluC | asnC, iscR, cpxR, dicC, lldR, gcvA, sfsB | 7 | 0.12; 0.17; 0.15; 0.23; 0.13; 0.11; 0.10 | 16, 43, 69, 137, 170, 211, 409 |
| rmf | mlrA, betI, rutR | 3 | 1.00; 0.12; 0.11 | 1, 22, 146 |
| rmuC-ubiE-ubiJ-esrE,rmuC | lexA, hcaR, sxy, ttk, yeiI | 5 | 0.14; 0.14; 0.41; 0.23; 0.16 | 13, 29, 45, 156, 283 |
| rnb | cusR, pdhR, yafN, cbl | 4 | 0.15; 0.16; 0.11; 0.11 | 22, 35, 224, 235 |
| rnb-yciW,yciW | galS, relE, yafN, sfsB, ybaQ | 5 | 0.13; 0.15; 0.12; 0.10; 0.12 | 58, 71, 169, 407, 465 |
| rnd | nagC, allR, ypdC | 3 | 0.51; 0.17; 0.15 | 4, 20, 184 |
| rne | dicC, lldR, gcvA, dicA, argR, deoR | 6 | 0.23; 0.13; 0.11; 0.15; 0.14; 0.12 | 136, 168, 213, 220, 244, 266 |
| rng | yjiR, deoR, dicC, sxy | 4 | 0.10; 0.23; 0.22; 0.18 | 35, 65, 166, 182 |
| rnhA,gloB-rnhA | arsR, allR, glnG, yeiI, iclR | 5 | 0.34; 0.11; 0.11; 0.13; 0.11 | 49, 87, 103, 347, 468 |
| rnk | ttk, ulaR | 2 | 0.39; 0.22 | 52, 119 |
| rnk-rna,rna | pspF, pdhR, ybaQ, treR, lldR, cysB | 6 | 0.15; 0.14; 0.26; 0.12; 0.12; 0.13 | 12, 45, 131, 158, 211, 285 |
| rnlA,rnlA-rnlB | yhjC, cadC, relE, yhfR, yfeC, rutR, nac, ttk | 8 | 0.15; 0.20; 0.25; 0.11; 0.14; 0.14; 0.12; 0.13 | 9, 27, 33, 43, 61, 84, 347, 370 |
| rnlB | ygiT, yagI, yncC | 3 | 0.12; 0.18; 0.19 | 25, 105, 180 |
| rnpB | yddM, yfeC | 2 | 0.20; 0.10 | 14, 104 |
| rnpB-garK-garR-garL-garP | arsR, dicA, dicC | 3 | 0.19; 0.14; 0.10 | 188, 251, 525 |
| rnt,rnt-lhr | cysB | 1 | 0.23 | 88 |
| rob | rutR, dgsA, fimZ, nac, deoR, aaeR, ttk | 7 | 0.23; 0.14; 0.26; 0.24; 0.15; 0.25; 0.19 | 27, 77, 97, 155, 170, 178, 208 |
| rof-yaeP | treR | 1 | 0.18 | 89 |
| roxA | modE, lldR, exuR, cynR | 4 | 0.12; 0.30; 0.17; 0.14 | 8, 22, 28, 185 |
| roxA-phoQ-phoP,phoQ-phoP,phoP | yeiE | 1 | 0.20 | 64 |
| rpiA,serA-rpiA | relE, deoR | 2 | 0.14; 0.10 | 82, 362 |
| rpiB,rpiB-yjdP | srlR, iclR, fimZ, argP | 4 | 0.12; 0.26; 0.11; 0.11 | 32, 110, 295, 400 |
| rplA-rplJ-rplL | ttk | 1 | 0.30 | 92 |
| rplF-rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP | dicC, relE, yafN, yeiI, yidZ, ypdC | 6 | 0.30; 0.14; 0.14; 0.24; 0.21; 0.13 | 75, 81, 143, 148, 184, 235 |
| rplJ-rplL-rpoB-rpoC,rplJ-rplL | dgsA, yjjQ, iclR | 3 | 0.20; 0.12; 0.11 | 24, 309, 473 |
| rplK-rplA-rplJ-rplL,rplK-rplA-rplJ-rplL-rpoB-rpoC | allR, cbl | 2 | 0.11; 0.10 | 71, 259 |
| rplL | purR, relE, arsR | 3 | 0.10; 0.12; 0.23 | 25, 97, 129 |
| rplN-rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB-rplW,rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB-rplW | ydjF, sfsB, tyrR | 3 | 0.14; 0.50; 0.13 | 17, 25, 104 |
| rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE | cpxR, yeiE, yagI, yjjQ | 4 | 0.18; 0.16; 0.17; 0.21 | 36, 90, 113, 155 |
| rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX | cpxR, glnG, yeiE, yagI, yjjQ | 5 | 0.18; 0.18; 0.16; 0.17; 0.21 | 37, 45, 89, 112, 156 |
| rplQ-rpoA-rpsD-rpsK-rpsM-rpmJ | allR, gadW, uxuR, arsR, ypdC, dicC | 6 | 0.14; 0.19; 0.22; 0.23; 0.11; 0.13 | 39, 41, 70, 120, 298, 418 |
| rplS-trmD-rimM | melR, iclR | 2 | 0.15; 0.16 | 140, 297 |
| rplS-trmD-rimM-rpsP,rimM-rpsP | melR, sxy | 2 | 0.15; 0.11 | 139, 342 |
| rplT-rpmI | sfsB, cbl, ttk, dicC | 4 | 0.42; 0.18; 0.12; 0.10 | 42, 102, 423, 531 |
| rplX-rplN-rpsQ-rpmC | yjjQ, sfsB, cpxR, dicC, matA, yafN, yeiI, tyrR, ypdC, yidZ | 10 | 0.35; 0.37; 0.14; 0.30; 0.11; 0.14; 0.24; 0.10; 0.13; 0.16 | 53, 61, 71, 76, 134, 142, 149, 172, 234, 282 |
| rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB,rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB | tyrR, pdhR, dicA, lldR, arsR | 5 | 0.22; 0.10; 0.19; 0.10; 0.11 | 26, 82, 139, 263, 420 |
| rplY | ydjF, cpxR, relE, fimZ | 4 | 0.13; 0.15; 0.12; 0.11 | 21, 70, 101, 303 |
| rpmC-rplP-rpsC-rplV-rpsS-rplB-rplW-rplD,rplV-rpsS-rplB-rplW-rplD,rpsC-rplV-rpsS-rplB-rplW-rplD | sfsB | 1 | 0.50 | 24 |
| rpmE | galS, yeiI, yidZ, ybaQ | 4 | 0.10; 0.28; 0.23; 0.19 | 102, 120, 156, 264 |
| rpmF-plsX-fabH,rpmF-plsX,rpmF-plsX-fabH-fabD-fabG | dgoR, uxuR, yafN | 3 | 0.10; 0.14; 0.13 | 7, 159, 166 |
| rpmH-rnpA-yidD,rpmH-rnpA,rpmH-rnpA-yidC-mnmE-yidD,rpmH,rpmH-rnpA-yidC-yidD | aaeR, cbl, ypdC, sxy, yeiI, yjjQ | 6 | 0.29; 0.10; 0.12; 0.13; 0.16; 0.12 | 141, 249, 255, 274, 278, 307 |
| rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF | lldR, yeiI, arsR, sxy | 4 | 0.15; 0.22; 0.17; 0.10 | 126, 174, 228, 355 |
| rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH,rplO-rpmD-rpsE-rplR-rplF-rpsH | yagI, iscR, lldR, arsR | 4 | 0.46; 0.30; 0.15; 0.17 | 8, 16, 125, 229 |
| rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN | yagI, iscR, relE, ttk | 4 | 0.46; 0.30; 0.18; 0.11 | 7, 15, 57, 454 |
| rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplR-rplF-rpsH-rpsN-rplE-rplX-rplN | yagI, glnG, yjjQ, lldR, sxy, ybaQ | 6 | 0.40; 0.18; 0.35; 0.14; 0.21; 0.12 | 12, 44, 52, 141, 141, 477 |
| rpoB-rpoC,rpoB | argP | 1 | 0.12 | 377 |
| rpoD | relE, pdhR, yeiI, yncC, yidZ, cbl | 6 | 0.18; 0.10; 0.24; 0.19; 0.21; 0.10 | 56, 84, 152, 179, 191, 244 |
| rpoE,rseC-rseB-rseA-rpoE,rseA-rpoE | nsrR, ttk, deoR | 3 | 0.13; 0.31; 0.10 | 60, 79, 333 |
| rpoH | yddM, ulaR, glnG, yagI | 4 | 0.17; 0.31; 0.10; 0.13 | 21, 55, 143, 171 |
| rpoH-ftsX-ftsE | aaeR, ulaR, mraZ, cbl, yidZ, ybaQ | 6 | 0.45; 0.28; 0.11; 0.12; 0.17; 0.17 | 44, 68, 118, 192, 260, 319 |
| rpoN-hpf-ptsN-yhbJ-npr,rpoN-hpf-ptsN-yhbJ | nac, sfsB, ybaQ, melR, argR, yeiI | 6 | 0.45; 0.39; 0.25; 0.10; 0.14; 0.17 | 32, 54, 158, 234, 260, 264 |
| rpoS | galS, lldR, yafN, cpxR, yidZ, yagI, yeiI, yjjQ | 8 | 0.22; 0.22; 0.18; 0.10; 0.21; 0.11; 0.19; 0.12 | 10, 57, 83, 143, 193, 213, 230, 312 |
| rpoS-nlpD | ybaQ, lldR, yafN, ypdC, relE, gcvA, argR | 7 | 0.39; 0.18; 0.15; 0.19; 0.11; 0.10; 0.12 | 56, 85, 121, 123, 124, 230, 319 |
| rpoS-nlpD-pcm | sxy, yidZ, ybaQ | 3 | 0.52; 0.24; 0.22 | 25, 141, 206 |
| rpoZ-spoT-trmH-recG,rpoZ-spoT-trmH | envY | 1 | 0.20 | 37 |
| rprA | yegW, cpxR, yjjQ, deoR | 4 | 0.12; 0.12; 0.23; 0.17 | 23, 112, 133, 139 |
| rpsA,rpsA-ihfB | sxy, exuR | 2 | 0.50; 0.11 | 27, 80 |
| rpsB-tsf,rpsB-tsf-pyrH-frr | yeiI, yncC, iscR, melR, cpxR, nrdR, deoR, aaeR | 8 | 0.76; 0.43; 0.12; 0.16; 0.12; 0.11; 0.13; 0.15 | 10, 57, 113, 119, 123, 161, 250, 363 |
| rpsB-tsf-pyrH-frr-tff,rpsB-tff,rpsB-tsf-tff | yncC, exuR, iscR, melR, cpxR, nrdR, deoR, yeiI | 8 | 0.43; 0.11; 0.12; 0.16; 0.12; 0.11; 0.13; 0.17 | 58, 89, 113, 118, 122, 161, 250, 260 |
| rpsC-rplV-rpsS-rplB-rplW-rplD-rplC,rplV-rpsS-rplB-rplW-rplD-rplC | yfeT, relE, dicC | 3 | 0.11; 0.40; 0.23 | 7, 14, 144 |
| rpsD-rpsK-rpsM-rpmJ-secY-rplO-rpmD | pdhR, yeiI, aaeR, yidZ | 4 | 0.10; 0.12; 0.12; 0.11 | 86, 359, 465, 476 |
| rpsF-priB-rpsR-rplI | iclR, yafN, cynR | 3 | 0.26; 0.15; 0.13 | 112, 126, 223 |
| rpsG-rpsL-tusB-tusC-tusD-yheO,tusB-tusC-tusD-yheO | asnC, rutR | 2 | 0.18; 0.29 | 5, 13 |
| rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV | yeiI, ydjF, sxy, rutR, dicA, ttk, dicC | 7 | 0.76; 0.12; 0.38; 0.11; 0.16; 0.14; 0.13 | 12, 32, 51, 139, 198, 352, 384 |
| rpsI | lldR | 1 | 0.12 | 198 |
| rpsI-rplM-zapE,zapE | iscR, aaeR, argR, lldR | 4 | 0.17; 0.43; 0.18; 0.10 | 47, 48, 181, 279 |
| rpsI3p | mraZ, yeiI, iclR | 3 | 0.15; 0.12; 0.14 | 56, 352, 374 |
| rpsK-rpsM-rpmJ-secY-rplO | pdhR, yeiI, aaeR, yidZ | 4 | 0.10; 0.12; 0.12; 0.11 | 87, 358, 465, 477 |
| rpsK-rpsM-rpmJ-secY-rplO-rpmD-rpsE-rplR | mhpR, yeiI, dicC | 3 | 0.11; 0.22; 0.11 | 4, 175, 490 |
| rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC,rplX-rplN-rpsQ-rpmC-rplP-rpsC | yheO, rutR, dicA, cysB, ttk, dicC | 6 | 0.20; 0.11; 0.16; 0.12; 0.15; 0.13 | 24, 138, 198, 293, 312, 385 |
| rpsO,pnp-rpsO | gcvA, yfeC, uxuR, yagI, sfsB | 5 | 0.27; 0.13; 0.15; 0.14; 0.11 | 38, 65, 145, 151, 370 |
| rpsP5p | yfeC, yafN, yidZ, melR, aaeR | 5 | 0.15; 0.21; 0.26; 0.13; 0.13 | 54, 57, 126, 176, 425 |
| rpsQ-rpmC-rplP-rpsC-rplV-rpsS | yeiI, ydjF, sxy, ttk | 4 | 0.76; 0.12; 0.38; 0.14 | 11, 33, 52, 351 |
| rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB-rplW-rplD-rplC-rpsJ,rpsC-rplV-rpsS-rplB-rplW-rplD-rplC-rpsJ,rplB-rplW-rplD-rplC-rpsJ,rplV-rpsS-rplB-rplW-rplD-rplC-rpsJ | yfeT, relE, dicC | 3 | 0.11; 0.40; 0.23 | 7, 14, 145 |
| rpsU-dnaG-rpoD,rpsU,rpsU-dnaG | relE, dicC, sxy, cysB, yagI | 5 | 0.42; 0.24; 0.19; 0.16; 0.10 | 12, 127, 168, 175, 243 |
| rraA | yjjQ, treR, yddM, ypdC, dicA, sfsB, yeiI, ybaQ | 8 | 0.41; 0.21; 0.11; 0.20; 0.14; 0.16; 0.10; 0.12 | 32, 61, 67, 116, 230, 235, 447, 456 |
| rraA-menA,menA | uxuR, allR, cadC, relE, ybaQ | 5 | 0.57; 0.14; 0.14; 0.13; 0.12 | 5, 36, 74, 91, 475 |
| rraA-menA-hslU-hslV,hslU-hslV | yhaJ, yddM, yciT, relE, galS, ybaQ | 6 | 0.21; 0.17; 0.13; 0.14; 0.10; 0.10 | 20, 23, 27, 78, 103, 543 |
| rraB | argR, yjjQ, nac, ulaR, cysB, yeiI | 6 | 0.68; 0.24; 0.17; 0.16; 0.11; 0.12 | 18, 116, 214, 218, 321, 372 |
| rrfC | tyrR, lldR | 2 | 0.11; 0.14 | 141, 159 |
| rrfD-rrlD | yheO, ttk, envY, dicC, fimZ, sfsB, ypdC, yjjQ, iclR, yidZ | 10 | 0.31; 0.44; 0.17; 0.22; 0.16; 0.16; 0.13; 0.14; 0.13; 0.10 | 7, 31, 59, 163, 194, 225, 238, 252, 396, 483 |
| rrfF-thrV-rrfD-rrlD-alaU-ileU-rrsD,alaU-ileU-rrsD,rrsD | gadW, ybiH, deoR, ypdC, iclR, dicC | 6 | 0.70; 0.13; 0.13; 0.10; 0.15; 0.11 | 2, 30, 239, 327, 348, 495 |
| rrfG | yfeC, ygiT, tyrR, lldR, gcvA | 5 | 0.16; 0.10; 0.11; 0.14; 0.11 | 35, 46, 141, 151, 207 |
| rrlA-rrfA,rrlA | pspF, ttk, cusR, yheO, dicC, fimZ, ypdC, yjjQ, iclR, yidZ | 10 | 0.28; 0.44; 0.10; 0.11; 0.22; 0.15; 0.13; 0.14; 0.16; 0.10 | 5, 33, 65, 102, 160, 213, 237, 251, 305, 480 |
| rrlB-rrfB,rrlB | pspF, fimZ, yheO, sfsB, iclR, sxy, yidZ | 7 | 0.28; 0.47; 0.10; 0.16; 0.16; 0.10; 0.10 | 6, 29, 115, 231, 305, 353, 480 |
| rrlE,rrlE-rrfE | pspF, cusR, yheO, gadW, argR, fimZ, sfsB, yidZ | 8 | 0.12; 0.10; 0.11; 0.11; 0.17; 0.15; 0.16; 0.10 | 18, 65, 102, 145, 193, 213, 231, 480 |
| rrlH-rrfH | ttk, cusR, yheO, fimZ, dicC, ypdC, yjjQ, yidZ | 8 | 0.44; 0.11; 0.11; 0.20; 0.22; 0.12; 0.13; 0.10 | 33, 59, 97, 151, 165, 267, 274, 480 |
| rrsA-ileT,rrsA,rrsA-ileT-alaT-rrlA-rrfA,rrsA-ileT-alaT | nsrR, cynR, cysB | 3 | 0.17; 0.25; 0.11 | 25, 51, 316 |
| rrsC,rrsC-gltU,rrsC-gltU-rrlC-rrfC | tyrR, gadW, cysB, iclR | 4 | 0.20; 0.12; 0.11; 0.15 | 36, 122, 319, 347 |
| rrsE,rrsE-gltV,rrsE-gltV-rrlE-rrfE | deoR, ypdC | 2 | 0.15; 0.12 | 183, 269 |
| rrsH-ileV-alaV-rrlH-rrfH,rrsH-ileV-alaV,rrsH-ileV | deoR, ypdC | 2 | 0.15; 0.12 | 183, 269 |
| rseC-rseB | aaeR | 1 | 0.38 | 76 |
| rseC-rseB-rseA,rseA | yfeC, allR, ygiT, cysB, rutR, relE, melR, dicA | 8 | 0.31; 0.16; 0.11; 0.27; 0.13; 0.11; 0.14; 0.16 | 7, 26, 37, 49, 99, 121, 154, 179 |
| rseC-rseB-rseA-rpoE-rseD | nsrR, ttk, deoR | 3 | 0.13; 0.31; 0.10 | 61, 81, 333 |
| rseP | ydjF, dicC, yncC, ybaQ | 4 | 0.19; 0.17; 0.14; 0.17 | 10, 277, 292, 322 |
| rseX | deoR, cynR, nrdR, yncC, melR, cbl, sxy, sfsB, argP | 9 | 0.37; 0.39; 0.15; 0.24; 0.13; 0.11; 0.15; 0.14; 0.12 | 12, 16, 93, 124, 164, 238, 238, 274, 396 |
| rsmB | yhaJ, cpxR, uxuR | 3 | 0.18; 0.12; 0.14 | 27, 106, 152 |
| rsmC | cysB, yidZ | 2 | 0.30; 0.14 | 41, 341 |
| rsmD-yhhL,rsmD-yhhL-yhhN | nagC, yafN, aaeR, arsR, yidZ | 5 | 0.16; 0.13; 0.18; 0.13; 0.10 | 29, 159, 303, 329, 500 |
| rsmE-gshB-yqgE-yqgF,rsmE-gshB | trpR, ybaQ, yncC | 3 | 0.11; 0.18; 0.13 | 28, 305, 326 |
| rsmF-yebV,rsmF | purR, yddM, fimZ, nac | 4 | 0.13; 0.16; 0.11; 0.13 | 12, 26, 306, 306 |
| rsmG | ttk, ybaQ | 2 | 0.20; 0.18 | 188, 292 |
| rsmG-mnmG,mnmG | ypdC, cusR, nac | 3 | 0.35; 0.10; 0.12 | 34, 67, 354 |
| rsmG-mnmG-mioC,mioC | yhaJ, yafN, treR | 3 | 0.11; 0.19; 0.18 | 65, 74, 85 |
| rsmH-ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC | mraZ, tyrR, pdhR, lldR, aaeR | 5 | 0.42; 0.29; 0.11; 0.11; 0.17 | 3, 13, 79, 240, 324 |
| rsmI | exuR, ulaR, cysB | 3 | 0.13; 0.11; 0.11 | 51, 334, 348 |
| rsmJ-prlC,prlC | yidZ, nrdR, ybaQ | 3 | 0.28; 0.10; 0.19 | 109, 202, 252 |
| rspB-rspA | ydfH, yafN, ulaR, ypdC, argP | 5 | 1.00; 0.32; 0.18; 0.14; 0.16 | 1, 16, 184, 207, 279 |
| rssA,rssA-rssB,rssA-rssB-galU | ulaR, melR, rutR, ttk, cysB, arsR | 6 | 0.40; 0.25; 0.19; 0.27; 0.16; 0.15 | 27, 37, 43, 113, 195, 278 |
| rssB-galU,rssB | yjjQ, gcvA, uxuR, dicA, iclR | 5 | 0.31; 0.17; 0.14; 0.11; 0.14 | 77, 94, 151, 331, 381 |
| rstA-rstB,rstA-rstB-tus | arsR, cpxR, dicC, argP | 4 | 0.39; 0.14; 0.14; 0.10 | 26, 79, 360, 433 |
| rsxA-rsxB,rsxA-rsxB-rsxC-rsxD-rsxG-rsxE-nth | envY, uxuR, iscR, ypdC, nac, yeiI | 6 | 0.35; 0.27; 0.15; 0.18; 0.18; 0.19 | 8, 39, 60, 137, 202, 215 |
| rtn | rutR, relE, melR, iclR, sfsB, ttk, dicC | 7 | 0.14; 0.12; 0.15; 0.18; 0.15; 0.14; 0.12 | 90, 104, 143, 243, 258, 315, 426 |
| rttR | yciT, ycjW, sfsB, sxy | 4 | 0.11; 0.11; 0.20; 0.12 | 45, 89, 164, 326 |
| rutG-rutF-rutE-rutD-rutC-rutB-rutA | ebgR, glnG, nsrR, rutR, gcvA, iclR, ybaQ | 7 | 0.17; 0.25; 0.15; 0.15; 0.13; 0.14; 0.14 | 4, 22, 33, 68, 147, 372, 397 |
| rutR | ebgR, yagI, glnG, nsrR, rutR, gcvA, melR, iclR, ybaQ | 9 | 0.17; 0.38; 0.25; 0.15; 0.15; 0.13; 0.14; 0.14; 0.14 | 5, 14, 22, 32, 69, 147, 148, 371, 397 |
| ruvB | ybcM | 1 | 0.10 | 25 |
| ruvB-ruvA | yfeC, ulaR, sxy, yjjQ, aaeR, arsR | 6 | 0.26; 0.35; 0.26; 0.15; 0.17; 0.14 | 11, 50, 89, 227, 316, 325 |
| ruvC | nsrR, galS, arsR | 3 | 0.13; 0.11; 0.15 | 65, 99, 268 |
| ruvC-yebC | yheO, gadW, argR, ulaR, iclR | 5 | 0.23; 0.12; 0.16; 0.11; 0.14 | 17, 120, 223, 338, 391 |
| ruvC-yebC-nudB | ybaQ | 1 | 0.20 | 244 |
| ruvC-yebC-nudB-aspS,yebC-nudB-aspS,aspS | cbl, yegW, yjjQ, nac | 4 | 0.42; 0.12; 0.33; 0.17 | 9, 21, 62, 216 |
| rybA-mntS | mlrA, fimZ, ulaR, nac, yncC | 5 | 0.13; 0.27; 0.21; 0.26; 0.14 | 5, 93, 123, 132, 297 |
| rybB | iclR, lldR, arsR, argR | 4 | 0.39; 0.14; 0.16; 0.14 | 28, 165, 237, 267 |
| rydB | yjjQ, yeiE, fimZ, ybaQ, aaeR | 5 | 1.00; 0.17; 0.14; 0.17; 0.15 | 1, 82, 222, 307, 382 |
| rydC | yagI, gadW, yidZ | 3 | 0.30; 0.16; 0.11 | 27, 70, 471 |
| ryeA | yjiR, yagI, yncC, melR, deoR | 5 | 0.10; 0.26; 0.20; 0.10; 0.11 | 37, 45, 163, 238, 300 |
| ryeG | yeiE, gadW, gcvA, sfsB, arsR, cynR, ybaQ | 7 | 0.61; 0.29; 0.11; 0.18; 0.15; 0.11; 0.11 | 6, 10, 194, 196, 269, 292, 506 |
| ryfA | cadC, argR | 2 | 0.14; 0.13 | 75, 280 |
| ryfD | galS, matA, fimZ, arsR, iclR | 5 | 0.16; 0.12; 0.21; 0.22; 0.16 | 26, 109, 135, 139, 315 |
| ryhB | nsrR, racR, iclR, melR | 4 | 0.22; 0.17; 0.28; 0.13 | 12, 12, 90, 173 |
| ryjA | trpR, cusR, rutR, uxuR, nsrR, yidZ, aaeR | 7 | 0.20; 0.15; 0.17; 0.20; 0.11; 0.24; 0.26 | 7, 23, 52, 82, 87, 147, 165 |
| ryjB | ypdC, argP | 2 | 0.15; 0.14 | 185, 326 |
| rzoD | arsR, ybaQ, dicC, sfsB, ttk | 5 | 0.56; 0.33; 0.21; 0.18; 0.16 | 12, 79, 180, 193, 283 |
| rzoQ | asnC, yheO, yeiI, iclR | 4 | 0.11; 0.10; 0.16; 0.16 | 20, 128, 285, 310 |
| rzoR | ybaQ, dicC, sfsB | 3 | 0.33; 0.21; 0.18 | 79, 180, 193 |
| rzpQ-rrrQ-ydfR-essQ | sfsB, glnG, gcvA, nac, yheO, iscR, yagI, deoR, lldR, ypdC | 10 | 0.45; 0.19; 0.26; 0.39; 0.14; 0.15; 0.12; 0.15; 0.12; 0.12 | 35, 37, 45, 51, 54, 66, 184, 196, 204, 263 |
| sanA-yeiS | ttk, cysB, argP, sxy | 4 | 0.20; 0.13; 0.15; 0.11 | 189, 273, 305, 332 |
| sapB-sapA-ymjA,sapA-ymjA,ymjA | cpxR, argP, nac, uxuR | 4 | 0.16; 0.30; 0.18; 0.11 | 60, 85, 200, 253 |
| sapF-sapD-sapC-sapB-sapA,sapC-sapB-sapA,sapA | betI, treR, argR, uxuR, deoR | 5 | 0.14; 0.19; 0.17; 0.11; 0.10 | 10, 83, 190, 254, 345 |
| satP | ulaR, rutR, ypdC | 3 | 0.57; 0.13; 0.14 | 11, 100, 197 |
| sbcB | envY, deoR, gadW, gcvA, ulaR, argP, dicC | 7 | 0.16; 0.20; 0.11; 0.11; 0.12; 0.15; 0.12 | 67, 102, 153, 214, 299, 312, 444 |
| sbcD,sbcC-sbcD | sfsB, dgsA | 2 | 0.46; 0.13 | 30, 89 |
| sbmA,sbmA-yaiW | nac | 1 | 0.18 | 196 |
| sbmC,yeeX-yeeA-sbmC,yeeA-sbmC | lexA, metR, sxy, pdhR, argR, yidZ, treR, lldR, aaeR, yncC, ybaQ | 11 | 0.23; 0.10; 0.51; 0.13; 0.37; 0.33; 0.11; 0.12; 0.14; 0.10; 0.11 | 4, 5, 26, 50, 52, 88, 187, 208, 402, 404, 531 |
| sbp | pspF, cbl, yheO, cysB, uxuR, nac, melR, aaeR, dicC | 9 | 0.12; 0.22; 0.13; 0.24; 0.20; 0.28; 0.11; 0.17; 0.11 | 17, 52, 58, 80, 80, 113, 212, 317, 485 |
| scpA-argK-scpB-scpC | exuR, yidZ | 2 | 0.13; 0.11 | 48, 466 |
| sdaA,sdaA-yoaD | gcvA, melR, sfsB, arsR, aaeR | 5 | 0.83; 0.28; 0.35; 0.13; 0.10 | 4, 27, 67, 360, 534 |
| sdaC-sdaB,sdaC,sdaC-sdaB-ygdG | gadW, yeiE, yidZ, dgsA, mraZ, cbl, yncC, iclR | 8 | 0.21; 0.23; 0.35; 0.13; 0.12; 0.12; 0.16; 0.18 | 39, 45, 71, 84, 108, 204, 235, 256 |
| sdhC-sdhD-sdhA-sdhB,sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX | nac, sxy, ypdC, nrdR, cynR, gcvA, yfeC, lldR, dicA, dicC, cysB, ybaQ | 12 | 0.79; 0.61; 0.41; 0.18; 0.23; 0.17; 0.11; 0.15; 0.14; 0.14; 0.10; 0.12 | 8, 11, 22, 47, 66, 90, 97, 128, 246, 333, 364, 495 |
| sdhD-sdhA-sdhB | sxy, ypdC, yafN, ulaR, nrdR, lldR | 6 | 0.66; 0.41; 0.21; 0.24; 0.14; 0.15 | 7, 20, 56, 90, 96, 128 |
| sdiA | gcvA, nac, cadC, cynR, argP, sxy, cbl, nrdR, ulaR, iclR, ttk | 11 | 0.51; 0.53; 0.13; 0.19; 0.25; 0.20; 0.14; 0.11; 0.15; 0.12; 0.10 | 7, 27, 88, 115, 136, 145, 151, 166, 240, 417, 485 |
| sdiA-yecC-yecS-dcyD,yecC-yecS-dcyD | galS, yfeC, yeiE, ttk, ybaQ | 5 | 0.18; 0.14; 0.16; 0.18; 0.10 | 18, 59, 87, 227, 547 |
| sdiA-yecC-yecS-dcyD-fliY,yecC-yecS-dcyD-fliY,fliY | ygbI, ycgE, cbl, sfsB, glnG, yidZ, nac, ybaQ, dicC | 9 | 0.11; 0.12; 0.20; 0.33; 0.10; 0.17; 0.14; 0.18; 0.15 | 5, 7, 77, 77, 136, 274, 276, 289, 325 |
| sdsN | gcvA, nac, cynR, argP, cbl, nrdR, ulaR, iclR, ttk | 9 | 0.51; 0.53; 0.19; 0.25; 0.14; 0.11; 0.15; 0.12; 0.10 | 8, 28, 116, 137, 151, 167, 240, 418, 484 |
| sdsR,pphA-sdsR | pspF, pdhR, melR, yjiR, yagI, deoR, nsrR, sxy, fimZ | 9 | 0.15; 0.23; 0.26; 0.10; 0.26; 0.24; 0.13; 0.18; 0.16 | 10, 12, 35, 36, 44, 56, 64, 190, 195 |
| secE-nusG,secE-nusG-rplK-rplA | ulaR, iclR | 2 | 0.49; 0.13 | 16, 416 |
| secM-secA-mutT,secM-secA,secM | ybhD, dicA, matA, yagI, arsR, yidZ | 6 | 0.21; 0.41; 0.17; 0.12; 0.18; 0.12 | 10, 13, 50, 195, 200, 400 |
| selA-yibF,yibF | nagC, basR, cysB | 3 | 0.17; 0.10; 0.14 | 18, 69, 244 |
| selB-selA | glnG, lldR, sfsB | 3 | 0.12; 0.11; 0.13 | 99, 251, 314 |
| selC | yhfR, yeaT, yafN, gcvA, cynR, nac, yncC, yagI, cysB, ulaR, argP | 11 | 0.17; 0.12; 0.18; 0.16; 0.18; 0.22; 0.17; 0.11; 0.13; 0.11; 0.12 | 5, 7, 86, 108, 122, 167, 202, 211, 269, 332, 382 |
| seqA-pgm-ybfP,seqA-pgm | yncC, ybaQ, iclR | 3 | 0.26; 0.24; 0.10 | 122, 171, 488 |
| serA,serA-ibsC | iclR, deoR, nrdR, sxy, argR, argP | 6 | 0.31; 0.17; 0.11; 0.17; 0.14; 0.11 | 61, 148, 186, 212, 273, 418 |
| serB-radA-nadR,serB-radA,serB | melR, cusR, cpxR, sxy, yeiI | 5 | 0.30; 0.12; 0.17; 0.34; 0.34 | 23, 44, 45, 61, 85 |
| serC-aroA-ycaL,serC,serC-aroA | deoR, yeiE, uxuR, iclR, yeiI, ybaQ | 6 | 0.22; 0.18; 0.15; 0.23; 0.14; 0.13 | 70, 81, 146, 149, 313, 424 |
| serS | yeiI | 1 | 0.43 | 54 |
| serT | cpxR, iscR, iclR, dgsA, cbl, allR | 6 | 0.39; 0.25; 0.37; 0.14; 0.22; 0.10 | 9, 25, 36, 58, 61, 88 |
| serU | melR | 1 | 0.20 | 71 |
| serW | envY, ypdC, cysB, sfsB | 4 | 0.11; 0.14; 0.11; 0.10 | 123, 211, 315, 386 |
| serW-infA,infA | yeiE, envY, cysB | 3 | 0.14; 0.11; 0.11 | 113, 123, 314 |
| serX | yeiI, yheO, ttk, argP | 4 | 0.44; 0.12; 0.14; 0.13 | 52, 87, 317, 351 |
| setB | uxuR, yagI, yhaJ, ycjW, tyrR, ypdC, cbl | 7 | 0.29; 0.29; 0.12; 0.12; 0.13; 0.16; 0.11 | 33, 38, 60, 70, 91, 157, 213 |
| setC | dicA, sxy, nrdR, ulaR, aaeR, dicC | 6 | 0.37; 0.23; 0.10; 0.13; 0.15; 0.13 | 18, 110, 196, 262, 364, 374 |
| sfmA | gcvA, exuR, yncC | 3 | 0.18; 0.11; 0.13 | 78, 88, 325 |
| sfmC-sfmD | yafN, iclR, dgsA, cynR, yagI, yeiI, cysB, dicC, aaeR | 9 | 0.34; 0.32; 0.14; 0.16; 0.13; 0.21; 0.11; 0.14; 0.12 | 14, 56, 61, 143, 155, 196, 333, 371, 460 |
| sfmH-sfmF | gadW, trpR, dicC, ttk, melR, nac | 6 | 0.34; 0.14; 0.32; 0.30; 0.11; 0.16 | 9, 17, 60, 87, 224, 230 |
| sfsB | treR, sfsB, arsR | 3 | 0.37; 0.25; 0.14 | 12, 113, 319 |
| sgcR-sgcE-sgcA-sgcQ-sgcC-sgcX-sgcB | sgcR, yhjC, yagI, galS, melR, yheO, deoR, nac | 8 | 1.00; 0.19; 0.42; 0.16; 0.24; 0.11; 0.15; 0.14 | 1, 4, 9, 28, 52, 101, 180, 305 |
| shiA-amn,shiA | argP, arsR, dicC, yeiI, cysB, cbl, fimZ, nac | 8 | 0.25; 0.21; 0.20; 0.19; 0.14; 0.11; 0.13; 0.14 | 133, 149, 212, 226, 230, 233, 245, 280 |
| shoB | iclR, yafN, uxuR, lldR, dicC | 5 | 0.28; 0.16; 0.16; 0.14; 0.20 | 86, 107, 134, 146, 207 |
| sibA | betI, relE, dicC, sfsB, ttk | 5 | 0.12; 0.18; 0.26; 0.16; 0.10 | 25, 55, 101, 223, 493 |
| sibB | ttk | 1 | 0.21 | 176 |
| sibC | fimZ, marA, ttk, cbl, aaeR | 5 | 0.48; 0.11; 0.41; 0.13; 0.14 | 27, 39, 48, 171, 416 |
| sibD | cbl, dicC, ttk, sfsB | 4 | 0.10; 0.17; 0.15; 0.10 | 262, 285, 306, 402 |
| sibE | uxuR, yidZ, yafN, dicC, ttk, ybaQ | 6 | 0.31; 0.27; 0.10; 0.17; 0.15; 0.14 | 27, 121, 258, 284, 305, 403 |
| sieB | dicC, ttk, yidZ | 3 | 0.31; 0.17; 0.11 | 64, 241, 452 |
| sixA | agaR, allR, rutR, fimZ, cbl, iclR, yidZ | 7 | 0.11; 0.22; 0.25; 0.28; 0.15; 0.13; 0.12 | 11, 11, 21, 89, 132, 402, 407 |
| skp-lpxD,skp-lpxD-fabZ-lpxA,skp-lpxD-fabZ-lpxA-lpxB | mraZ, relE, matA, dicC, yeiI | 5 | 0.15; 0.11; 0.11; 0.17; 0.12 | 64, 115, 121, 280, 384 |
| slp-dctR | gadW, envY, dgsA, iclR, deoR, sxy, aaeR | 7 | 1.00; 0.95; 0.24; 0.17; 0.12; 0.13; 0.16 | 1, 3, 15, 267, 289, 296, 338 |
| slt,slt-trpR | yeiI, yafN, dgsA, relE, tyrR, nac, dicC | 7 | 0.71; 0.29; 0.15; 0.16; 0.14; 0.20; 0.12 | 17, 26, 45, 65, 84, 182, 429 |
| slyA | modE, yncC, glnG, yeiE, nrdR, cynR | 6 | 0.11; 0.56; 0.19; 0.22; 0.13; 0.10 | 16, 35, 39, 56, 124, 309 |
| slyB | purR, cpxR, cynR, dicA, arsR, ulaR, dicC | 7 | 0.10; 0.16; 0.20; 0.21; 0.13; 0.11; 0.13 | 26, 48, 104, 112, 350, 354, 386 |
| slyD | treR, sxy, fimZ | 3 | 0.20; 0.17; 0.12 | 66, 221, 275 |
| smf | argR, sxy, fimZ, yeiI, iclR | 5 | 0.70; 0.57; 0.43; 0.22; 0.14 | 14, 16, 31, 169, 382 |
| smpB-ssrA,smpB | betI, yagI, iscR, gadW, arsR, yeiI, aaeR | 7 | 0.13; 0.26; 0.13; 0.12; 0.11; 0.11; 0.13 | 16, 47, 96, 112, 410, 439, 445 |
| smrA | ebgR, sfsB, envY, ybcM, yhfR, argR, argP, yeiI | 8 | 0.14; 0.74; 0.31; 0.11; 0.13; 0.45; 0.29; 0.14 | 6, 6, 10, 18, 26, 38, 100, 327 |
| smrB | melR, treR, yidZ | 3 | 0.22; 0.12; 0.12 | 56, 156, 436 |
| smtA-mukF-mukE-mukB,smtA-mukF-mukE | ulaR, ydjF, cbl, ttk, iclR | 5 | 0.34; 0.10; 0.14; 0.19; 0.11 | 52, 56, 158, 199, 476 |
| sodA-kdgT,sodA | iscR, betI, aaeR | 3 | 0.27; 0.10; 0.31 | 17, 38, 116 |
| sodB | iscR, treR, aaeR, arsR | 4 | 0.52; 0.16; 0.31; 0.11 | 4, 113, 119, 440 |
| sodC | envY, yeiI, ybaQ | 3 | 0.13; 0.11; 0.12 | 88, 417, 471 |
| sodC-ydhF,ydhF | dicC, yidZ | 2 | 0.16; 0.11 | 291, 441 |
| sohB | yafN, aaeR | 2 | 0.12; 0.19 | 189, 277 |
| sokB | yagI, sxy | 2 | 0.30; 0.16 | 29, 223 |
| sokC | rutR, yhjC, sxy, treR, cadC, sfsB, dicA, ttk | 8 | 0.36; 0.11; 0.37; 0.19; 0.11; 0.22; 0.18; 0.15 | 3, 22, 53, 72, 113, 147, 156, 302 |
| sokE | lexA, nac, ulaR, cynR, lldR | 5 | 0.12; 0.56; 0.29; 0.21; 0.15 | 22, 22, 63, 88, 117 |
| sokX | ypdC, sxy, yncC, sfsB, yidZ, nac, iclR | 7 | 0.24; 0.19; 0.17; 0.16; 0.17; 0.10; 0.11 | 69, 176, 204, 240, 263, 393, 472 |
| soxR | betI, cusR, yidZ, sfsB, fimZ | 5 | 0.12; 0.14; 0.42; 0.37; 0.13 | 19, 30, 33, 63, 258 |
| soxS | uxuR, betI, yidZ, sfsB, fimZ, yncC | 6 | 0.38; 0.12; 0.46; 0.37; 0.13; 0.14 | 15, 19, 26, 62, 257, 294 |
| speB | yagI, dicC | 2 | 0.14; 0.11 | 146, 478 |
| speB-speA | yhaJ, ttk, aaeR | 3 | 0.14; 0.18; 0.15 | 44, 235, 374 |
| speB-speA-yqgB,yqgB | ydjF, yhaJ, ttk, argR, aaeR | 5 | 0.11; 0.14; 0.18; 0.12; 0.15 | 39, 46, 234, 317, 376 |
| speC | yciT, ypdC, argP | 3 | 0.11; 0.12; 0.15 | 39, 284, 297 |
| speD | iclR, gcvA, arsR, yagI, dgsA, yafN, sfsB | 7 | 0.38; 0.24; 0.32; 0.21; 0.11; 0.11; 0.12 | 31, 51, 59, 67, 139, 219, 350 |
| speD-speE-yacC,yacC | yidZ, cysB, aaeR | 3 | 0.20; 0.12; 0.11 | 203, 298, 495 |
| speE,speD-speE | dgsA, aaeR, ulaR | 3 | 0.23; 0.42; 0.12 | 19, 55, 291 |
| spf | fabR, nac, cadC, yeiI, cynR, ybaQ, iclR | 7 | 0.10; 0.56; 0.14; 0.30; 0.14; 0.20; 0.12 | 15, 23, 72, 107, 179, 242, 440 |
| sppA,sppA-ansA | matA, ttk, yncC | 3 | 0.11; 0.15; 0.11 | 131, 310, 369 |
| spy | cysB, nsrR, argP, cynR, yjjQ, aaeR | 6 | 0.72; 0.13; 0.26; 0.11; 0.12; 0.12 | 5, 50, 128, 287, 296, 469 |
| spy3p | arsR, yheO, envY, ttk, ybaQ | 5 | 0.23; 0.10; 0.11; 0.23; 0.10 | 123, 126, 129, 150, 546 |
| sra | ompR, argR, iclR, yjjQ, dgsA, tyrR, dicC | 7 | 0.10; 0.26; 0.27; 0.23; 0.11; 0.11; 0.13 | 25, 84, 95, 122, 129, 159, 400 |
| sra-bdm | nsrR, argR, iclR, yjjQ, tyrR, dicC | 6 | 0.13; 0.26; 0.27; 0.23; 0.11; 0.13 | 55, 86, 97, 121, 161, 398 |
| sraA | fimZ, yafN, gcvA, ttk, treR, yidZ, yncC, aaeR, sfsB | 9 | 0.40; 0.18; 0.16; 0.27; 0.12; 0.17; 0.13; 0.14; 0.10 | 41, 78, 98, 116, 181, 259, 311, 388, 390 |
| sraB | arsR, ypdC, aaeR | 3 | 0.24; 0.16; 0.13 | 113, 169, 437 |
| sraG | sxy | 1 | 0.16 | 235 |
| srkA-dsbA | yhaJ, nac, yeiI, fimZ | 4 | 0.13; 0.31; 0.18; 0.12 | 48, 93, 238, 273 |
| srlA-srlE-srlB-srlD-gutM-srlR-srlQ,srlA-srlE-srlB-srlD-gutM-srlR | srlR, ulaR, cysB, ybaQ | 4 | 1.00; 0.17; 0.16; 0.12 | 1, 197, 198, 460 |
| srlR,srlR-srlQ | yhfR, srlR, melR, cynR, yjjQ | 5 | 0.17; 0.17; 0.31; 0.15; 0.14 | 4, 15, 21, 166, 255 |
| srmB | nsrR, ybaQ | 2 | 0.11; 0.14 | 101, 390 |
| sroA | lexA, argR, mraZ, yjjQ, yagI, ybaQ | 6 | 0.11; 0.36; 0.13; 0.17; 0.11; 0.10 | 30, 57, 95, 204, 218, 565 |
| sroH | sxy, mraZ, ttk, ycjW, allR, yidZ, gcvA | 7 | 0.56; 0.15; 0.31; 0.11; 0.11; 0.22; 0.11 | 19, 54, 75, 77, 83, 180, 209 |
| ssb | galS, yjiR, ulaR, arsR, argR, ybaQ | 6 | 0.19; 0.14; 0.39; 0.22; 0.17; 0.12 | 13, 13, 32, 134, 197, 484 |
| sseA | sfsB, sxy, arsR, dicC | 4 | 0.34; 0.26; 0.16; 0.12 | 74, 95, 248, 461 |
| sseB | exuR, yeiE, yheO | 3 | 0.13; 0.21; 0.10 | 57, 60, 118 |
| sslE | nagC, galS, yagI, nrdR, dicC | 5 | 0.19; 0.13; 0.21; 0.12; 0.15 | 16, 55, 68, 125, 327 |
| ssnA | aaeR, deoR, ypdC, sxy | 4 | 0.22; 0.12; 0.11; 0.11 | 212, 288, 321, 341 |
| sspA-rpsI-rplM,rpsI-rplM | yeiI, iclR | 2 | 0.35; 0.16 | 80, 282 |
| sspB-sspA | yddM, yhaJ, fimZ, yeiE, cbl, cysB, dicC, ttk, iclR | 9 | 0.21; 0.23; 0.47; 0.18; 0.17; 0.19; 0.16; 0.12; 0.12 | 12, 16, 30, 80, 113, 139, 294, 418, 446 |
| ssrA | ybaQ, yeiI, ttk | 3 | 0.33; 0.23; 0.14 | 74, 165, 350 |
| ssrS-fau,ssrS,ssrS-fau-sibC | ygiT, rutR, yidZ, dicC | 4 | 0.13; 0.22; 0.15; 0.10 | 15, 28, 307, 515 |
| sstT | ydjF, yeiI, fimZ, cbl | 4 | 0.12; 0.46; 0.13; 0.10 | 31, 46, 241, 266 |
| ssuB-ssuC-ssuD-ssuA-ssuE | cysB, betI, ybiH, asnC, ycjZ, cynR, nac, lldR, sfsB, cbl, arsR, argP, aaeR | 13 | 0.66; 0.14; 0.14; 0.10; 0.11; 0.23; 0.31; 0.16; 0.17; 0.11; 0.13; 0.10; 0.13 | 8, 11, 22, 23, 25, 61, 88, 110, 213, 217, 351, 437, 443 |
| stfR-tfaR | cynR, yidZ | 2 | 0.11; 0.14 | 275, 344 |
| sthA | ydjF, yhaJ, glnG, uxuR, lldR, yncC | 6 | 0.11; 0.10; 0.12; 0.13; 0.13; 0.14 | 53, 79, 95, 188, 196, 276 |
| stpA | ttk, fimZ, gcvA, yfeC, cynR, deoR, argR, argP, ulaR | 9 | 0.58; 0.52; 0.32; 0.16; 0.25; 0.21; 0.26; 0.20; 0.13 | 11, 23, 23, 41, 57, 88, 89, 201, 277 |
| sucA-sucB,sucA-sucB-sucC-sucD | yjjQ, sxy, iclR | 3 | 0.36; 0.19; 0.12 | 46, 179, 419 |
| sucB-sucC-sucD | nrdR | 1 | 0.13 | 116 |
| sufD-sufC-sufB-sufA,sufE-sufS-sufD-sufC-sufB-sufA | yjjQ, yafN, argR, gadW, yeiE, gcvA, fimZ, dicC | 8 | 1.00; 0.21; 0.35; 0.16; 0.17; 0.12; 0.14; 0.11 | 2, 55, 58, 74, 83, 184, 221, 488 |
| sugE | pepA, treR, dgsA, yncC | 4 | 0.10; 0.20; 0.11; 0.21 | 27, 64, 141, 148 |
| suhB | iclR, cysB | 2 | 0.16; 0.11 | 313, 345 |
| sxy | lexA, sfsB, sxy, ybaQ, deoR, argP | 6 | 0.24; 0.46; 0.29; 0.25; 0.10; 0.12 | 2, 33, 76, 153, 350, 393 |
| syd | arsR, sfsB, ybaQ, aaeR | 4 | 0.17; 0.14; 0.14; 0.11 | 221, 283, 415, 496 |
| symE | ygiT | 1 | 0.13 | 18 |
| symR | ygiT, uxuR, yidZ | 3 | 0.13; 0.11; 0.14 | 16, 232, 357 |
| tabA | kdgR, relE, lldR, yncC, arsR, ttk | 6 | 0.22; 0.29; 0.15; 0.16; 0.12; 0.10 | 6, 26, 131, 242, 371, 477 |
| tadA-pgpC | yfhH, nagC, lldR, yncC, yidZ | 5 | 1.00; 0.13; 0.12; 0.13; 0.14 | 2, 41, 199, 318, 359 |
| tag-yiaC | yncC, fimZ, aaeR | 3 | 0.24; 0.12; 0.15 | 131, 270, 372 |
| talA-tktB,talA | lldR, envY, argP, sfsB, ttk | 5 | 0.26; 0.10; 0.16; 0.10; 0.12 | 36, 139, 286, 404, 426 |
| talB,talB-mog | galR, glnG, argR, fimZ | 4 | 0.17; 0.15; 0.18; 0.11 | 4, 70, 170, 298 |
| tam | uxuR, arsR | 2 | 0.16; 0.14 | 130, 305 |
| tamA-tamB-ytfP,tamA | ulaR, ybaQ, argR, cynR | 4 | 0.29; 0.26; 0.16; 0.11 | 61, 126, 214, 281 |
| tas | yfeC, sxy, mraZ, yjjQ, ttk, nac, yncC, ybaQ | 8 | 0.14; 0.32; 0.12; 0.22; 0.22; 0.12; 0.10; 0.14 | 56, 69, 98, 146, 169, 346, 394, 410 |
| tatA-tatB-tatC-tatD,tatA-tatB-tatC | envY, fimZ | 2 | 0.20; 0.11 | 35, 311 |
| tatD | arsR, uxuR, ttk | 3 | 0.32; 0.19; 0.10 | 62, 86, 479 |
| tatE | dicC | 1 | 0.35 | 47 |
| tauA-tauB-tauC-tauD,tauA-tauB-tauC | nagC, cbl, cadC, sfsB, yeiI | 5 | 0.11; 0.21; 0.13; 0.12; 0.12 | 62, 63, 87, 333, 392 |
| tcdA | exuR, cysB | 2 | 0.11; 0.13 | 74, 260 |
| tdcF-tdcE-tdcD-tdcC-tdcB-tdcA-tdcG | ulaR, nagC, yheO, nac, cpxR, deoR, yeiI, ybaQ | 8 | 0.81; 0.11; 0.13; 0.36; 0.14; 0.12; 0.11; 0.10 | 4, 56, 63, 68, 75, 273, 434, 559 |
| tdcF-tdcE-tdcD-tdcC-tdcB-tdcG | yddM, yhfR, arsR, sxy | 4 | 0.21; 0.14; 0.20; 0.15 | 11, 16, 156, 249 |
| tdcR | ulaR, nagC, yheO, nac, cpxR, deoR, yeiI, ybaQ | 8 | 0.81; 0.11; 0.13; 0.36; 0.14; 0.12; 0.11; 0.10 | 4, 57, 62, 68, 76, 273, 434, 560 |
| tdh-kbl-yibB,yibB | nrdR, argP, yafN | 3 | 0.12; 0.24; 0.10 | 143, 157, 253 |
| tdk | arsR, racR, ulaR, nsrR, treR, argP, ybaQ, argR, yncC | 9 | 0.78; 0.11; 0.28; 0.11; 0.13; 0.23; 0.23; 0.16; 0.14 | 2, 44, 66, 93, 143, 166, 188, 219, 290 |
| tehA-tehB,tehA | nsrR, iscR, argP, yjjQ, matA, cysB, yncC | 7 | 0.21; 0.15; 0.35; 0.27; 0.11; 0.10; 0.10 | 16, 57, 61, 99, 128, 358, 397 |
| tesB | ybaQ | 1 | 0.28 | 108 |
| tfaD | racR, yagI, aaeR | 3 | 0.34; 0.30; 0.40 | 4, 31, 59 |
| tfaE-stfE | ybcM, yeiI | 2 | 0.21; 0.12 | 4, 380 |
| tfaQ-stfQ-nohQ | agaR, aaeR, dicC, melR, ulaR, gcvA | 6 | 0.12; 0.76; 0.26; 0.15; 0.18; 0.11 | 9, 12, 103, 130, 171, 205 |
| tfaX | tyrR, yhjC, yhaJ, gcvA, galS, relE, yjjQ, yfeC, nsrR, yagI, lldR, yncC, yidZ, iclR | 14 | 0.33; 0.12; 0.16; 0.21; 0.12; 0.14; 0.28; 0.11; 0.10; 0.16; 0.14; 0.21; 0.12; 0.11 | 7, 18, 33, 61, 73, 87, 91, 100, 112, 129, 140, 145, 408, 465 |
| tgt-yajC,tgt-yajC-secD | nsrR, allR, melR | 3 | 0.14; 0.11; 0.13 | 49, 76, 177 |
| thiD-thiM-rcnR,rcnR | galS, yagI, arsR | 3 | 0.12; 0.12; 0.16 | 61, 179, 252 |
| thiF-thiE-thiC-rsd-thiS,rsd | deoR, dicC, yeiI, yidZ | 4 | 0.18; 0.20; 0.14; 0.11 | 131, 226, 312, 468 |
| thiH-thiG-thiF-thiE-thiC-thiS,thiE-thiC,thiF-thiE-thiC-thiS | racR, yeiI, dicA, lldR, aaeR | 5 | 0.18; 0.24; 0.16; 0.13; 0.18 | 9, 144, 178, 194, 301 |
| thiI | sfsB, matA, cbl, yafN, ybaQ, ttk, yeiI, lldR | 8 | 0.55; 0.17; 0.21; 0.18; 0.25; 0.18; 0.18; 0.11 | 17, 44, 66, 87, 155, 226, 241, 249 |
| thiQ-thiP-thiB | lexA, argR, mraZ, yagI, ybaQ | 5 | 0.11; 0.36; 0.13; 0.11; 0.10 | 29, 56, 96, 217, 566 |
| thrB-thrC,thrB | pdhR, ybaQ, ypdC, ttk, aaeR | 5 | 0.17; 0.22; 0.12; 0.11; 0.13 | 28, 205, 265, 445, 448 |
| thrL,thrL-thrA-thrB-thrC,thrL-thrA-thrB | trpR, mraZ, nagC, tyrR, gadW, dicC | 6 | 0.14; 0.18; 0.11; 0.14; 0.11; 0.21 | 18, 33, 61, 82, 143, 203 |
| thrU-tyrU-glyT-thrT-tufB-secE-nusG-rplK,thrU-tyrU-glyT-thrT-tufB-secE-nusG,thrU-tyrU-glyT-thrT-tufB | mraZ, yeiE, deoR, tyrR, dicA, lldR, yidZ | 7 | 0.23; 0.16; 0.20; 0.11; 0.17; 0.12; 0.13 | 17, 92, 105, 163, 172, 224, 391 |
| thrW | relE, cysB, aaeR, yncC | 4 | 0.12; 0.14; 0.16; 0.12 | 108, 224, 343, 343 |
| thyA | matA, ycjW, treR, fimZ, ybaQ | 5 | 0.19; 0.11; 0.12; 0.15; 0.14 | 35, 86, 154, 212, 393 |
| tig-clpP-clpX,tig | yfeC, ttk, gcvA, cbl | 4 | 0.16; 0.32; 0.18; 0.19 | 40, 74, 75, 92 |
| tilS | glnG, argP | 2 | 0.12; 0.20 | 92, 205 |
| tisB | lexA, cadC, yeiE, ybaQ, ycjW, yafN, argR, ttk | 8 | 0.19; 0.25; 0.34; 0.39; 0.11; 0.11; 0.15; 0.14 | 6, 18, 20, 52, 95, 206, 228, 324 |
| tktB | relE, fimZ, yagI, dicC | 4 | 0.12; 0.15; 0.11; 0.13 | 100, 203, 229, 403 |
| tldD | dicC, lldR, uxuR, nac, sfsB, dicA, arsR | 7 | 0.28; 0.15; 0.15; 0.24; 0.17; 0.10; 0.11 | 80, 122, 135, 151, 215, 354, 437 |
| tmk-holB-ycfH | yegW, arsR | 2 | 0.10; 0.11 | 45, 419 |
| tmpR | mraZ, yhaJ, yeiE, yeiI, uxuR, aaeR, argR | 7 | 0.15; 0.11; 0.15; 0.17; 0.10; 0.18; 0.10 | 55, 66, 107, 272, 288, 305, 360 |
| tnaB | arsR, uxuR, ulaR, sfsB, yidZ | 5 | 0.35; 0.12; 0.14; 0.13; 0.11 | 42, 218, 250, 308, 445 |
| tnaC,tnaC-tnaA | hcaR, deoR, cpxR, iclR, yncC, arsR | 6 | 0.11; 0.25; 0.12; 0.20; 0.13; 0.13 | 43, 46, 95, 201, 314, 354 |
| tolB-pal-ybgF-lysT-valT-lysW-valZ,tolB-pal-ybgF-lysT,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY,tolB-pal-ybgF,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,tolB-pal-ybgF-lysT-valT | rutR, yafN, cadC | 3 | 1.00; 0.20; 0.10 | 1, 60, 123 |
| tolC,tolC-ygiB-ygiC,tolC-ygiA-ygiB-ygiC,tolC-ygiA-ygiB | marA, argP, aaeR, gcvA, ypdC, sfsB | 6 | 0.14; 0.54; 0.34; 0.12; 0.10; 0.12 | 21, 22, 100, 183, 330, 336 |
| tonB | cynR, iscR | 2 | 0.19; 0.12 | 113, 115 |
| topA | ttk, deoR, yncC | 3 | 0.42; 0.19; 0.15 | 41, 108, 247 |
| topB-selD | dicC, yeiE, yfeC, matA, yagI, sxy, cbl, ttk, iclR | 9 | 0.46; 0.23; 0.14; 0.10; 0.14; 0.19; 0.10; 0.15; 0.13 | 18, 48, 58, 138, 142, 167, 243, 311, 401 |
| topB-selD-ydjA | matA, glnG, yncC | 3 | 0.11; 0.11; 0.11 | 130, 131, 370 |
| torC-torA-torD | torR, fimZ, aaeR, iscR, yeiI, ypdC, ulaR | 7 | 1.00; 0.32; 0.29; 0.10; 0.23; 0.15; 0.17 | 2, 72, 137, 137, 156, 188, 192 |
| torD | yhjC, ybaQ, uxuR, yidZ | 4 | 0.13; 0.63; 0.12; 0.15 | 12, 15, 221, 311 |
| torI | gadW, ttk, nac | 3 | 0.25; 0.36; 0.20 | 16, 62, 177 |
| torR | torR, fimZ, aaeR, iscR, yeiI, ypdC, ulaR | 7 | 1.00; 0.32; 0.29; 0.10; 0.23; 0.15; 0.17 | 1, 71, 138, 138, 160, 189, 193 |
| torS | ybaQ, uxuR, glnG, cbl | 4 | 0.96; 0.24; 0.11; 0.13 | 2, 54, 108, 175 |
| torT | ybaQ, glnG, yagI | 3 | 0.96; 0.11; 0.17 | 3, 107, 119 |
| torZ-torY | ybiH, nrdR, sxy, cysB, dicC, argR, nac | 7 | 0.12; 0.11; 0.18; 0.16; 0.16; 0.10; 0.10 | 39, 164, 195, 201, 293, 367, 391 |
| tpiA | nsrR, cysB, iclR, ybaQ | 4 | 0.14; 0.29; 0.23; 0.20 | 39, 44, 139, 230 |
| tpr-tyrV | yciT, aaeR, galS, ycjW, sfsB, sxy | 6 | 0.13; 0.49; 0.14; 0.11; 0.20; 0.12 | 24, 31, 34, 90, 166, 325 |
| tpr-tyrV-tyrT | yciT, aaeR, galS, mraZ, sfsB, sxy | 6 | 0.13; 0.49; 0.14; 0.14; 0.20; 0.12 | 25, 31, 35, 67, 165, 324 |
| tpr-tyrV-tyrT-purU-ychJ-rttR,tyrV-tyrT-purU-ychJ,ychJ | melR, dicA, ttk, iclR, cysB, arsR | 6 | 0.25; 0.24; 0.27; 0.21; 0.16; 0.15 | 37, 82, 112, 187, 193, 279 |
| tpx | dicC, allR, tyrR, lldR, deoR, argP, yeiI | 7 | 0.42; 0.13; 0.17; 0.11; 0.12; 0.13; 0.12 | 30, 50, 55, 258, 285, 347, 398 |
| tqsA | yjjQ, dicC, iclR | 3 | 0.33; 0.26; 0.21 | 65, 105, 177 |
| treA | gadW, argP, sfsB, nac, ybaQ | 5 | 0.17; 0.27; 0.24; 0.24; 0.15 | 56, 119, 126, 147, 362 |
| treC | racR, iclR, yagI, ypdC | 4 | 0.12; 0.20; 0.11; 0.13 | 32, 210, 221, 229 |
| treC-treB,treB | treR, yncC, glnG, ttk | 4 | 0.57; 0.57; 0.16; 0.12 | 3, 30, 60, 400 |
| treF | fimZ, yjjQ, argP, ttk, cynR | 5 | 0.42; 0.28; 0.20; 0.15; 0.10 | 33, 85, 199, 299, 306 |
| treR | yegW, cysB, fimZ, ybaQ, ttk | 5 | 0.10; 0.26; 0.29; 0.17; 0.12 | 35, 68, 85, 326, 397 |
| trg | nagC, sxy | 2 | 0.14; 0.16 | 37, 226 |
| trkA | ydjF, cbl, yfeC, arsR, ttk, argP, sfsB, iclR, dicC | 9 | 0.17; 0.30; 0.10; 0.21; 0.23; 0.22; 0.15; 0.10; 0.11 | 12, 24, 102, 148, 160, 177, 262, 483, 509 |
| trkG | ulaR, ebgR, ybaQ, cbl, dicC, sfsB, argR, aaeR | 8 | 0.64; 0.10; 0.33; 0.15; 0.21; 0.18; 0.10; 0.11 | 8, 15, 78, 139, 179, 192, 358, 503 |
| trkH-hemG | melR, gcvA | 2 | 0.16; 0.14 | 126, 136 |
| trmA | yidZ, trpR, ttk | 3 | 0.79; 0.18; 0.14 | 6, 11, 335 |
| trmL | sfsB | 1 | 0.15 | 266 |
| trmN | nsrR, ybaQ | 2 | 0.11; 0.14 | 100, 391 |
| trpA-trpB-trpC | yagI, envY | 2 | 0.31; 0.17 | 24, 60 |
| trpA-trpB-trpC-trpD-trpE-trpL,trpD-trpE-trpL,trpL | trpR, iclR, cysB, ybaQ, yidZ | 5 | 0.29; 0.31; 0.13; 0.18; 0.12 | 3, 62, 277, 298, 429 |
| trpR | trpR, cusR, ttk, iclR | 4 | 0.42; 0.18; 0.22; 0.12 | 2, 12, 171, 420 |
| trpS | yjiR, mraZ, deoR, treR, argR | 5 | 0.22; 0.24; 0.16; 0.11; 0.11 | 5, 13, 162, 198, 328 |
| trpS-gph-rpe,gph-rpe | yfeC, dgsA, melR, aaeR | 4 | 0.23; 0.21; 0.11; 0.14 | 15, 22, 204, 421 |
| trpS-gph-rpe-dam | exuR, fimZ, aaeR | 3 | 0.12; 0.20; 0.23 | 66, 145, 209 |
| trpS-gph-rpe-dam-damX | glnG, ygiT, pdhR, sxy, yidZ, argP, ttk | 7 | 0.20; 0.11; 0.14; 0.17; 0.19; 0.17; 0.11 | 31, 34, 41, 200, 230, 259, 446 |
| trpS-gph-rpe-dam-damX-aroB-aroK,dam-damX-aroB-aroK,damX-aroB-aroK | ycjZ, dicC, fimZ, yidZ, nac, cynR, argP | 7 | 0.11; 0.33; 0.34; 0.37; 0.32; 0.10; 0.12 | 20, 56, 59, 64, 84, 299, 387 |
| trpT | relE, cadC, dicC, argP, tyrR, lldR | 6 | 0.19; 0.16; 0.35; 0.26; 0.11; 0.14 | 47, 49, 50, 124, 141, 155 |
| truC-yqcC-csrB | srlR, fimZ, ybaQ, aaeR, tyrR, yjjQ, cbl, yafN, sxy, yeiI, iclR | 11 | 0.11; 0.31; 0.26; 0.28; 0.11; 0.21; 0.12; 0.12; 0.15; 0.14; 0.14 | 36, 75, 124, 144, 147, 157, 193, 195, 255, 326, 353 |
| truD,pcm-umpG-truD | yeiI, ulaR, arsR | 3 | 0.32; 0.13; 0.12 | 96, 271, 376 |
| truD-ispF-ispD-ftsB-ygbE,ygbE,umpG-truD-ispF-ispD-ftsB-ygbE | ybhD, yeiI, nac | 3 | 0.15; 0.18; 0.14 | 23, 251, 294 |
| trxA-rhoL-rho,trxA-rhoL-rho-wecA,trxA | purR, arsR, ttk, deoR | 4 | 0.12; 0.36; 0.30; 0.15 | 14, 40, 90, 188 |
| trxB | argR, nsrR, yeiI, rutR, iclR, yeiE, argP, sfsB, ybaQ | 9 | 0.44; 0.12; 0.34; 0.13; 0.22; 0.11; 0.17; 0.11; 0.12 | 41, 84, 87, 110, 166, 176, 269, 377, 464 |
| trxC | treR, yidZ, ttk, dicA | 4 | 0.19; 0.31; 0.15; 0.12 | 76, 95, 294, 313 |
| tsaD | relE, dicC, sxy, cysB, yagI | 5 | 0.42; 0.24; 0.19; 0.16; 0.10 | 13, 128, 168, 176, 243 |
| tsaE-amiB,tsaE-amiB-mutL,tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC | galS, aaeR, yncC | 3 | 0.12; 0.26; 0.14 | 68, 164, 295 |
| tsgA | ydjF, cpxR, yjjQ, arsR | 4 | 0.14; 0.13; 0.28; 0.12 | 18, 89, 90, 392 |
| tsr | argP, tyrR, gadW, cpxR, nac, deoR, sxy, yidZ | 8 | 0.68; 0.19; 0.17; 0.15; 0.32; 0.17; 0.14; 0.11 | 11, 41, 63, 68, 82, 137, 267, 460 |
| tsx | deoR, purR, ypdC, argR | 4 | 0.49; 0.10; 0.14; 0.11 | 2, 24, 214, 331 |
| ttcA | mraZ, trpR, yeiE, lldR | 4 | 0.32; 0.17; 0.14; 0.11 | 6, 13, 114, 233 |
| ttcC | yfeC, envY, argP | 3 | 0.33; 0.17; 0.30 | 6, 56, 87 |
| ttdA-ttdB-ttdT | matA, yeiE, iscR, dicC, argP, dicA | 6 | 0.24; 0.20; 0.15; 0.25; 0.26; 0.15 | 17, 67, 68, 111, 126, 223 |
| ttdR | iscR, yeiE, ypdC, argP, dicA | 5 | 0.15; 0.20; 0.19; 0.26; 0.15 | 68, 68, 121, 125, 223 |
| tufA | cpxR, ttk, yjjQ, yncC, dicC | 5 | 0.22; 0.44; 0.13; 0.10; 0.10 | 22, 36, 295, 401, 513 |
| tufA-fusA | pdhR, nac, ttk, fimZ, sfsB | 5 | 0.17; 0.34; 0.30; 0.26; 0.12 | 27, 73, 91, 105, 315 |
| tufA-fusA-rpsG-rpsL,fusA-rpsG-rpsL | nsrR, sxy, sfsB | 3 | 0.13; 0.35; 0.24 | 51, 59, 119 |
| tufB,tufB-secE | pepA, mraZ, relE, argP, ttk, lldR | 6 | 0.14; 0.23; 0.31; 0.24; 0.19; 0.12 | 5, 15, 23, 151, 197, 223 |
| tus | zur, yegW, uxuR, nac, cysB, yncC, argP, aaeR | 8 | 0.15; 0.11; 0.18; 0.29; 0.17; 0.12; 0.10; 0.11 | 14, 30, 100, 102, 174, 349, 434, 523 |
| tusA | nac, yeiI, argP, arsR | 4 | 0.18; 0.18; 0.11; 0.11 | 205, 243, 413, 436 |
| tusE | mraZ, nac, ybaQ, yncC | 4 | 0.19; 0.18; 0.16; 0.11 | 32, 211, 337, 383 |
| tusE-yccA,yccA | cpxR, zur, iscR, yeiE, cbl, dgsA | 6 | 0.39; 0.10; 0.25; 0.26; 0.22; 0.14 | 8, 19, 28, 34, 60, 60 |
| tynA | cynR, gcvA, dicC | 3 | 0.36; 0.10; 0.15 | 19, 218, 310 |
| typA | glnG, yhaJ, ttk, deoR, dicC | 5 | 0.63; 0.12; 0.18; 0.13; 0.14 | 4, 58, 223, 243, 347 |
| typA5p | uxuR, glnG, exuR, ulaR, yjjQ, ybaQ | 6 | 0.64; 0.52; 0.12; 0.21; 0.14; 0.14 | 4, 7, 67, 135, 258, 419 |
| tyrA-aroF | tyrR, hdfR, cysB, iclR, arsR, yeiI, sfsB | 7 | 1.00; 0.14; 0.22; 0.18; 0.15; 0.13; 0.11 | 1, 10, 94, 260, 261, 332, 365 |
| tyrB | tyrR, ttk, ypdC, dicC, yeiI, nac | 6 | 0.39; 0.40; 0.14; 0.20; 0.15; 0.12 | 3, 49, 199, 217, 309, 342 |
| tyrP | tyrR, nac, cysB | 3 | 0.23; 0.13; 0.11 | 24, 325, 326 |
| tyrR,tyrR-ycjG | tyrR, treR, hcaR, envY, ulaR, yeiI, sfsB | 7 | 0.28; 0.24; 0.10; 0.12; 0.18; 0.13; 0.10 | 15, 42, 51, 110, 167, 342, 387 |
| tyrT-purU,purU | ulaR, ybhD, rutR, yafN, cysB, arsR | 6 | 0.40; 0.11; 0.19; 0.23; 0.16; 0.15 | 28, 36, 42, 46, 194, 280 |
| uacT | yncC, uxuR | 2 | 0.51; 0.13 | 39, 190 |
| ubiC-ubiA | srlR, deoR, tyrR, yidZ | 4 | 0.11; 0.18; 0.11; 0.12 | 38, 134, 146, 402 |
| ubiD-fre,ubiD | aaeR | 1 | 0.11 | 511 |
| ubiE-ubiJ-ubiB-tatA-esrE,ubiE-ubiJ-ubiB-tatA-tatB-esrE,ubiE-ubiJ-ubiB | yeiI, uxuR, deoR | 3 | 0.53; 0.22; 0.20 | 31, 69, 97 |
| ubiF | ybaQ, treR, fimZ, sxy, arsR, yeiI | 6 | 0.37; 0.11; 0.14; 0.12; 0.13; 0.12 | 62, 203, 235, 329, 357, 387 |
| ubiG | relE, lldR, iclR, yncC, dicC | 5 | 0.12; 0.14; 0.18; 0.12; 0.12 | 110, 148, 259, 345, 445 |
| ubiI-ubiH-pepP-ygfB,ubiH-pepP-ygfB | rutR, ydjF, yidZ, dicC | 4 | 0.22; 0.12; 0.15; 0.10 | 29, 35, 308, 514 |
| ubiX | iclR, ttk, arsR, ybaQ | 4 | 0.22; 0.23; 0.13; 0.10 | 157, 157, 365, 561 |
| ubiX-purF-cvpA,purF-cvpA | lldR, ydjF, ygiT, argR, ybaQ, ypdC, yafN, sxy, arsR | 9 | 0.43; 0.23; 0.12; 0.45; 0.37; 0.17; 0.10; 0.10; 0.12 | 8, 9, 28, 36, 61, 150, 248, 348, 380 |
| udp-rmuC,udp,udp-rmuC-ubiE-ubiJ-esrE | cusR, exuR, yfeC, dicA, ypdC | 5 | 0.12; 0.14; 0.16; 0.27; 0.22 | 43, 46, 47, 48, 87 |
| ugd | yagI, yjjQ, nac, gcvA, iclR, lldR | 6 | 0.35; 0.55; 0.39; 0.15; 0.19; 0.11 | 16, 20, 52, 115, 233, 257 |
| ugpB,ugpQ-ugpC-ugpE-ugpA-ugpB | argR, tyrR, deoR, melR, yncC, yidZ | 6 | 0.23; 0.12; 0.15; 0.11; 0.11; 0.10 | 106, 113, 176, 217, 379, 491 |
| ugpQ | cysB, ulaR, nac, fimZ, argP | 5 | 0.75; 0.53; 0.32; 0.11; 0.11 | 4, 14, 78, 290, 425 |
| uhpB | melR | 1 | 0.11 | 208 |
| uhpC-uhpB-uhpA,uhpB-uhpA | yeiI, melR, yagI | 3 | 0.48; 0.11; 0.11 | 41, 209, 228 |
| uhpC-uhpB-uhpA-ilvN-ilvB-ivbL,uhpA-ilvN-ilvB-ivbL,ivbL,ilvN-ilvB-ivbL | lexA, cadC, yeiE, ybaQ, iclR, yafN, argR, yidZ | 8 | 0.19; 0.25; 0.34; 0.39; 0.26; 0.11; 0.15; 0.14 | 8, 17, 21, 54, 109, 205, 230, 337 |
| uhpT | rutR, yagI, ybaQ, uxuR, dicC | 5 | 0.15; 0.13; 0.19; 0.10; 0.13 | 67, 152, 255, 281, 381 |
| uidC-uidB-uidA | uidR, envY, uxuR, dgsA, fimZ, dicC, allR, melR, yjjQ | 9 | 1.00; 0.35; 0.31; 0.18; 0.31; 0.28; 0.10; 0.12; 0.17 | 1, 7, 25, 29, 78, 85, 92, 186, 213 |
| uidR | uxuR, lldR, ybaQ, melR, sfsB, aaeR, ttk | 7 | 0.33; 0.25; 0.26; 0.12; 0.16; 0.21; 0.11 | 23, 41, 127, 188, 234, 248, 468 |
| ulaA-ulaB-ulaC-ulaD-ulaE,ulaA-ulaB-ulaC-ulaD-ulaE-ulaF | ulaR, ypdC, cadC, aaeR, argR | 5 | 1.00; 0.33; 0.10; 0.18; 0.13 | 1, 40, 120, 293, 295 |
| ulaD-ulaE | ybaQ, mraZ, dicC, argP, ttk | 5 | 0.29; 0.12; 0.20; 0.13; 0.12 | 103, 107, 224, 343, 431 |
| ulaG | ulaR, ypdC, cadC, aaeR, argR | 5 | 1.00; 0.33; 0.10; 0.18; 0.13 | 2, 41, 121, 294, 294 |
| ulaR | ulaR, envY, nrdR, cbl | 4 | 0.57; 0.10; 0.11; 0.11 | 12, 145, 181, 219 |
| umpH | nagC, matA, yidZ, ypdC, iclR, yafN, dicA | 7 | 0.14; 0.14; 0.29; 0.21; 0.25; 0.13; 0.13 | 34, 65, 105, 108, 121, 153, 259 |
| umpH-nagC,nagC | aaeR, ttk | 2 | 0.33; 0.19 | 110, 211 |
| umpH-nagC-nagA-nagB,nagC-nagA-nagB | nagC, basR, lldR, deoR, ybaQ, fimZ, iclR, cysB | 8 | 0.35; 0.16; 0.21; 0.22; 0.26; 0.24; 0.19; 0.11 | 8, 25, 62, 79, 121, 122, 226, 338 |
| umuD-umuC | lexA, aaeR, kdgR, betI, gadW, yeiI, yafN, argP | 8 | 0.19; 0.75; 0.12; 0.11; 0.17; 0.20; 0.10; 0.12 | 10, 14, 30, 33, 55, 197, 246, 392 |
| ung | pdhR, gcvA, sfsB, iclR, lldR | 5 | 0.57; 0.44; 0.22; 0.22; 0.14 | 4, 13, 144, 151, 162 |
| ushA | arsR, yjiR, yhfR, yagI, matA, yncC, iclR, aaeR, deoR, ypdC | 10 | 0.52; 0.11; 0.11; 0.22; 0.15; 0.16; 0.16; 0.18; 0.12; 0.11 | 15, 29, 41, 59, 60, 223, 277, 291, 292, 312 |
| uspA | nrdR, uxuR, envY, yjjQ, gcvA, arsR, argP | 7 | 0.19; 0.25; 0.15; 0.28; 0.15; 0.14; 0.13 | 40, 46, 75, 92, 118, 323, 342 |
| uspB | nrdR, uxuR, yjjQ, gcvA | 4 | 0.19; 0.25; 0.28; 0.15 | 41, 46, 92, 117 |
| uspC | gadW, ulaR, dgsA, basR, relE, melR, dicC, argP | 8 | 0.24; 0.40; 0.17; 0.11; 0.15; 0.11; 0.21; 0.13 | 20, 26, 33, 67, 73, 198, 201, 335 |
| uspE | mlrA, dicC, sfsB | 3 | 0.17; 0.28; 0.23 | 3, 82, 131 |
| uspE-fnr,fnr | ydjF, yheO, yidZ, marA, argR, dicA, ypdC, uxuR, dicC, yjjQ, yncC | 11 | 0.27; 0.20; 0.52; 0.13; 0.19; 0.16; 0.13; 0.10; 0.15; 0.11; 0.11 | 6, 18, 23, 30, 162, 182, 223, 284, 323, 341, 380 |
| uspF | cbl, ybaQ, yeiE, fimZ, yjjQ, yidZ | 6 | 0.17; 0.26; 0.13; 0.17; 0.12; 0.12 | 114, 123, 126, 184, 304, 437 |
| uspG | allR, relE, treR, yncC | 4 | 0.17; 0.10; 0.11; 0.15 | 17, 137, 184, 253 |
| uvrA | yjiR, galS, ulaR, arsR, argR, ybaQ | 6 | 0.14; 0.19; 0.39; 0.22; 0.17; 0.12 | 12, 14, 31, 135, 196, 485 |
| uvrB | iclR, ypdC, dgsA, argR, cysB, yeiI | 6 | 0.46; 0.40; 0.15; 0.17; 0.12; 0.13 | 17, 26, 52, 192, 312, 345 |
| uvrC | uxuR, ycjZ, rutR, dicA | 4 | 0.40; 0.13; 0.25; 0.20 | 14, 16, 19, 121 |
| uvrD | yidZ, dgsA, argR, treR | 4 | 0.28; 0.10; 0.19; 0.11 | 113, 155, 156, 183 |
| uxaB | exuR, relE, ttk, argR, ybaQ | 5 | 0.70; 0.39; 0.14; 0.11; 0.16 | 3, 18, 329, 339, 347 |
| uxuA-uxuB | uxuR, exuR, ypdC, iclR, ulaR, cbl, yeiI, deoR, argP | 9 | 1.00; 0.22; 0.32; 0.29; 0.21; 0.13; 0.19; 0.12; 0.12 | 1, 20, 43, 75, 126, 182, 216, 295, 374 |
| uxuR | uxuR, rutR, ybaQ, dicA, ypdC | 5 | 0.28; 0.13; 0.27; 0.16; 0.11 | 36, 107, 118, 201, 302 |
| valS | yncC, ttk, yidZ | 3 | 0.31; 0.19; 0.14 | 93, 214, 360 |
| valU-valX-valY-lysV | relE, matA, ttk, nrdR | 4 | 0.50; 0.22; 0.26; 0.12 | 7, 20, 127, 134 |
| valV-valW | fabR, mraZ, pdhR, yfeC, relE, aaeR, iclR | 7 | 0.20; 0.19; 0.16; 0.15; 0.15; 0.31; 0.20 | 6, 28, 29, 50, 74, 123, 206 |
| valZ-lysY | relE, ttk | 2 | 0.50; 0.22 | 9, 163 |
| ves | yijO, cbl, arsR, ybaQ | 4 | 0.11; 0.16; 0.21; 0.12 | 5, 119, 151, 489 |
| viaA-ravA | mraZ, allR, argP, dicC | 4 | 0.15; 0.13; 0.18; 0.14 | 52, 54, 235, 366 |
| vsr-dcm | yncC, yidZ, yeiI, iclR, ybaQ | 5 | 0.69; 0.40; 0.20; 0.16; 0.13 | 19, 46, 207, 300, 445 |
| vsr-dcm-yedJ,dcm-yedJ,yedJ | deoR, nrdR, melR, sxy, cbl | 5 | 0.37; 0.15; 0.13; 0.15; 0.11 | 11, 92, 164, 238, 239 |
| waaA-coaD,waaA | argR, argP | 2 | 0.25; 0.18 | 93, 250 |
| waaH | yfeT, aaeR, iscR, ypdC | 4 | 0.11; 0.43; 0.14; 0.11 | 6, 51, 77, 322 |
| waaH-tdh-kbl,tdh-kbl | iclR, ulaR, nrdR, yfeC, ypdC, nac | 6 | 0.60; 0.53; 0.16; 0.10; 0.15; 0.11 | 8, 13, 79, 107, 178, 385 |
| waaU-waaZ | ydfH, cynR, nac | 3 | 0.11; 0.14; 0.10 | 9, 188, 394 |
| waaU-waaZ-waaY-waaR-waaO-waaB-waaS-waaP-waaG-waaQ,waaS-waaP-waaG-waaQ,waaP-waaG-waaQ | argR, argP | 2 | 0.25; 0.18 | 91, 251 |
| waaU-waaZ-waaY-waaR-waaO-waaB-waaS-waaP-waaG-waaQ-rirA | argR, argP | 2 | 0.25; 0.18 | 91, 251 |
| waaZ-waaY | dgsA, yfeC, gcvA, dicA | 4 | 0.16; 0.14; 0.14; 0.19 | 41, 57, 123, 140 |
| wbbH-glf | ycjZ, exuR, nsrR, ybhD, nagC, cbl, glnG, yjjQ, gadW, yncC, cysB, aaeR | 12 | 0.12; 0.21; 0.15; 0.11; 0.12; 0.22; 0.16; 0.28; 0.13; 0.24; 0.14; 0.21 | 18, 25, 34, 48, 54, 59, 59, 94, 103, 123, 239, 241 |
| wbbK-wbbJ-wbbI | envY, ypdC, yeiE | 3 | 0.34; 0.49; 0.13 | 9, 9, 122 |
| wbbL | glnG, sfsB, dicA, dgsA, cynR, dicC, yeiI, yjjQ, argP, yncC | 10 | 0.22; 0.40; 0.24; 0.11; 0.12; 0.16; 0.14; 0.11; 0.13; 0.11 | 25, 46, 83, 138, 238, 289, 317, 330, 346, 371 |
| wcaB-wcaA-wzc-wzb-wza | nagC, yhfR, yddM, cynR, fimZ, argR, nac, yjjQ, iclR, ybaQ | 10 | 0.46; 0.11; 0.12; 0.21; 0.24; 0.21; 0.20; 0.17; 0.16; 0.14 | 6, 46, 60, 97, 119, 132, 183, 210, 309, 388 |
| wcaM-wcaL-wcaK | yddM, uxuR, yidZ, dicC | 4 | 0.16; 0.18; 0.21; 0.11 | 25, 103, 201, 475 |
| wecA-wzzE-wecB-wecC-rffG-rffH-wecD-wecE-wzxE-wzyE-wecG-wecF,wecA-wzzE,wecA-wzzE-wecB | lldR, deoR, nac, relE, melR, cynR, ttk | 7 | 0.52; 0.37; 0.48; 0.12; 0.15; 0.16; 0.12 | 3, 14, 31, 98, 145, 153, 417 |
| wecF | pepA, yidZ, arsR, cbl, ttk | 5 | 0.13; 0.41; 0.21; 0.13; 0.18 | 12, 39, 144, 186, 228 |
| wecH | galS, yjjQ, gadW, mraZ, deoR, pdhR, envY, dgsA, cynR | 9 | 0.32; 0.83; 0.21; 0.16; 0.24; 0.11; 0.12; 0.11; 0.14 | 3, 3, 35, 49, 60, 75, 104, 125, 186 |
| wzc-wzb | sfsB, ttk | 2 | 0.33; 0.12 | 82, 422 |
| wzxB-rfbC-rfbA | exuR, yddM, galS, rutR, aaeR, dicC | 6 | 0.17; 0.10; 0.12; 0.12; 0.21; 0.13 | 29, 78, 81, 130, 251, 395 |
| wzxB-rfbC-rfbA-rfbD-rfbB,rfbC-rfbA-rfbD-rfbB | yegW, fimZ, envY, argP | 4 | 0.12; 0.32; 0.11; 0.18 | 13, 64, 115, 248 |
| wzxC-wcaJ-cpsG-cpsB-wcaI-wcaH-wcaG-gmd-wcaF-wcaE-wcaD-wcaC | aaeR, yddM, treR, yeiI, ypdC, cysB | 6 | 0.45; 0.11; 0.14; 0.19; 0.11; 0.12 | 41, 65, 138, 220, 296, 305 |
| wzzB | dgsA, deoR, cbl, yeiI | 4 | 0.14; 0.19; 0.11; 0.15 | 69, 107, 232, 295 |
| xanP-yicH,xanP | yfeC, galS, matA, ulaR, sfsB, arsR, yidZ | 7 | 0.21; 0.13; 0.11; 0.14; 0.12; 0.11; 0.11 | 23, 51, 126, 251, 330, 416, 450 |
| xanQ-guaD-ghxQ | dgsA, ypdC | 2 | 0.14; 0.14 | 55, 209 |
| xapB | relE | 1 | 0.17 | 61 |
| xapB-xapA | ybiH, ypdC, cysB, cpxR, sfsB, argR, ttk, uxuR, dicC, aaeR | 10 | 0.14; 0.38; 0.26; 0.12; 0.23; 0.20; 0.19; 0.12; 0.17; 0.16 | 26, 29, 66, 117, 132, 134, 196, 216, 279, 336 |
| xapR | cysB, argP, yncC, cynR, nac | 5 | 0.25; 0.28; 0.23; 0.15; 0.18 | 73, 107, 134, 171, 210 |
| xdhA-xdhB-xdhC,xdhA-xdhB | nac, cusR, cynR, melR, argR, yafN, argP | 7 | 0.61; 0.12; 0.19; 0.15; 0.16; 0.11; 0.17 | 17, 46, 118, 134, 209, 230, 263 |
| xisD | arsR, yjjQ, yeiI, aaeR, ybaQ | 5 | 0.23; 0.11; 0.10; 0.12; 0.11 | 128, 321, 460, 462, 516 |
| xseA | marA, nsrR, yjjQ, ybaQ | 4 | 0.14; 0.11; 0.21; 0.12 | 23, 97, 158, 466 |
| xthA | glnG, iclR, argR, cysB, cynR, dicA, ulaR, aaeR | 8 | 0.25; 0.24; 0.19; 0.14; 0.10; 0.11; 0.10; 0.14 | 20, 129, 163, 227, 296, 340, 371, 400 |
| xylB | cpxR, yeiE | 2 | 0.39; 0.26 | 10, 35 |
| xylB-xylA | srlR, ttk, sxy, yjjQ, yncC | 5 | 0.13; 0.37; 0.20; 0.21; 0.14 | 23, 58, 149, 153, 275 |
| xylE | exuR, cysB, dicC, yncC, cynR, sfsB, nac | 7 | 0.20; 0.27; 0.32; 0.16; 0.12; 0.14; 0.10 | 26, 56, 57, 237, 247, 280, 402 |
| xylF-xylG-xylH-xylR | srlR, ttk, melR, sxy, yjjQ | 5 | 0.13; 0.37; 0.15; 0.20; 0.21 | 23, 57, 133, 148, 152 |
| xylR | yagI, sfsB, cbl, ulaR | 4 | 0.31; 0.18; 0.12; 0.15 | 25, 187, 196, 221 |
| yaaA | cadC, melR, yjjQ, ulaR, uxuR | 5 | 0.22; 0.12; 0.15; 0.13; 0.10 | 22, 182, 229, 261, 286 |
| yaaI | nrdR, yheO, yncC, yjjQ, iclR, ybaQ | 6 | 0.21; 0.13; 0.14; 0.13; 0.12; 0.10 | 30, 65, 282, 289, 433, 554 |
| yaaJ | galR, glnG, argR, fimZ | 4 | 0.17; 0.15; 0.18; 0.11 | 4, 69, 171, 298 |
| yaaU | yhaJ, yidZ, ybaQ, yheO, ypdC | 5 | 0.17; 0.34; 0.29; 0.11; 0.15 | 29, 79, 105, 108, 179 |
| yaaW | uxuR, yjjQ, aaeR, ybaQ | 4 | 0.11; 0.13; 0.17; 0.15 | 257, 288, 313, 371 |
| yaaX | mraZ, cynR, fimZ, sfsB | 4 | 0.20; 0.33; 0.42; 0.16 | 22, 26, 35, 239 |
| yaaY | yhfZ, tyrR, cbl, gcvA, gadW, nrdR | 6 | 0.14; 0.19; 0.23; 0.15; 0.10; 0.11 | 3, 47, 49, 120, 168, 171 |
| yabI | ycjW, ybaQ, fimZ, argP | 4 | 0.12; 0.28; 0.11; 0.13 | 72, 110, 301, 337 |
| yabP-yabQ | ttk | 1 | 0.59 | 9 |
| yabR | yidZ, galS, yeiI, ypdC, gadW | 5 | 0.41; 0.12; 0.26; 0.17; 0.10 | 38, 77, 134, 155, 160 |
| yacG | agaR, cysB | 2 | 0.10; 0.14 | 15, 250 |
| yacG-zapD-coaE | fimZ, cynR | 2 | 0.33; 0.13 | 63, 204 |
| yacH | yddM, iscR, treR, ulaR, deoR | 5 | 0.10; 0.12; 0.14; 0.19; 0.14 | 74, 106, 130, 159, 229 |
| yacL | melR | 1 | 0.25 | 44 |
| yacM | fimZ, cynR | 2 | 0.33; 0.13 | 61, 205 |
| yadC | basR, cadC, yeiE, nac | 4 | 0.15; 0.15; 0.13; 0.16 | 27, 58, 129, 246 |
| yadC-yadK-yadL-yadM | nagC, argP, iclR, fimZ | 4 | 0.12; 0.27; 0.24; 0.12 | 50, 120, 132, 284 |
| yadD | yagI, ybaQ, sxy, yjjQ, glnG, yncC | 6 | 0.49; 0.46; 0.39; 0.25; 0.11; 0.11 | 5, 31, 47, 106, 113, 385 |
| yadE | ybaQ, yncC, nac, yidZ, iclR | 5 | 0.23; 0.18; 0.17; 0.15; 0.11 | 189, 199, 227, 324, 458 |
| yadG-yadH-yadI,yadG-yadH | mraZ, envY, matA, yncC, yidZ, dicA, nrdR, aaeR, iclR | 9 | 0.27; 0.28; 0.14; 0.33; 0.24; 0.16; 0.10; 0.12; 0.10 | 8, 14, 74, 84, 148, 195, 200, 485, 503 |
| yadI | yegW, mraZ, ybaQ, dicC | 4 | 0.14; 0.11; 0.23; 0.14 | 9, 117, 190, 354 |
| yadN | nagC, gcvA, ulaR, dicC, cynR, iclR, aaeR | 7 | 0.17; 0.19; 0.23; 0.25; 0.15; 0.17; 0.13 | 19, 72, 101, 109, 173, 275, 439 |
| yadS-btuF-mtn,mtn | dicA | 1 | 0.12 | 279 |
| yadW | yidZ, yeiE, yagI, sxy | 4 | 0.54; 0.19; 0.15; 0.10 | 17, 72, 140, 363 |
| yadX | fimZ, exuR, ulaR, argP | 4 | 0.66; 0.11; 0.18; 0.19 | 13, 69, 172, 227 |
| yaeF | ypdC, melR, aaeR, nrdR, uxuR | 5 | 0.67; 0.20; 0.38; 0.11; 0.13 | 4, 69, 77, 170, 194 |
| yaeF-proS,proS | ttk | 1 | 0.21 | 174 |
| yaeH | ulaR, fimZ, ttk | 3 | 0.23; 0.22; 0.14 | 109, 129, 354 |
| yaeI | ulaR, envY, uxuR | 3 | 0.37; 0.19; 0.14 | 41, 42, 161 |
| yaeQ-arfB-nlpE | argP, treR | 2 | 0.63; 0.18 | 13, 88 |
| yaeR-tilS,yaeR | rutR, argP | 2 | 0.33; 0.20 | 6, 206 |
| yafC | dicA, ttk, tyrR, yeiI, yafN, iclR | 6 | 0.27; 0.38; 0.11; 0.21; 0.12; 0.17 | 54, 54, 157, 186, 198, 268 |
| yafD,yafD-yafE | ttk, dicA, tyrR, yeiI, yafN, iclR | 6 | 0.38; 0.27; 0.11; 0.21; 0.12; 0.17 | 54, 55, 157, 185, 198, 268 |
| yafF | pspF, dicA, ttk, yeiI, yidZ, aaeR | 6 | 0.13; 0.31; 0.26; 0.22; 0.11; 0.10 | 13, 26, 119, 177, 474, 537 |
| yafK | melR, yjjQ, nac | 3 | 0.13; 0.13; 0.12 | 168, 292, 344 |
| yafK-yafQ-dinJ,yafQ-dinJ | dinJ, betI, ybiH, rutR, yfeC, argR, yncC, cynR, yidZ | 9 | 1.00; 0.17; 0.15; 0.21; 0.16; 0.24; 0.22; 0.16; 0.16 | 1, 6, 13, 34, 37, 100, 144, 147, 297 |
| yafL | dinJ, betI, ybiH, rutR, yfeC, argR, yncC, cynR, yidZ | 9 | 1.00; 0.17; 0.15; 0.21; 0.16; 0.24; 0.28; 0.16; 0.16 | 2, 7, 14, 35, 38, 101, 103, 147, 297 |
| yafN-yafO-yafP | yafN, ycjW, gadW, aaeR, gcvA, yheO, cbl, arsR, ttk | 9 | 1.00; 0.26; 0.19; 0.36; 0.15; 0.10; 0.12; 0.15; 0.14 | 1, 10, 43, 89, 119, 125, 197, 271, 345 |
| yafS | galR, yheO, yeiE, yidZ, iscR, yncC, melR | 7 | 0.23; 0.31; 0.43; 0.36; 0.13; 0.20; 0.11 | 3, 9, 10, 67, 84, 168, 220 |
| yafT | yhjC, argR, iclR, fimZ, treR, aaeR, yncC | 7 | 0.14; 0.21; 0.21; 0.16; 0.10; 0.21; 0.12 | 11, 127, 182, 193, 216, 250, 347 |
| yafU | matA, dicA, argR, ttk, yidZ, aaeR | 6 | 0.24; 0.31; 0.30; 0.26; 0.11; 0.10 | 18, 25, 69, 118, 475, 538 |
| yafV | lldR, ybaQ, yegW, fimZ, ulaR, ypdC, nac | 7 | 0.34; 0.49; 0.11; 0.15; 0.15; 0.13; 0.14 | 14, 24, 25, 218, 225, 246, 300 |
| yafZ | cpxR, sxy, ybaQ | 3 | 0.40; 0.36; 0.10 | 7, 58, 563 |
| yafZ-ykfA,ykfA | pdhR, argP, yncC, exuR, mraZ, cbl, ulaR, dicC, argR, ttk, sfsB | 11 | 0.21; 0.49; 0.50; 0.13; 0.15; 0.14; 0.15; 0.18; 0.12; 0.14; 0.10 | 16, 24, 42, 58, 65, 153, 236, 238, 318, 348, 394 |
| yagB-yagA | yagI, treR, ybaQ | 3 | 1.00; 0.14; 0.17 | 2, 135, 324 |
| yagE-yagF | yagI, treR, ybaQ | 3 | 1.00; 0.14; 0.17 | 1, 134, 323 |
| yagG-yagH | sfsB, yncC, cadC | 3 | 0.44; 0.32; 0.12 | 36, 87, 89 |
| yagI | yeiI, aaeR | 2 | 0.73; 0.45 | 14, 40 |
| yagI-argF,argF | yncC, galS, argR, argP | 4 | 0.86; 0.11; 0.25; 0.21 | 10, 91, 97, 186 |
| yagJ | dgsA, argR | 2 | 0.12; 0.14 | 111, 248 |
| yagK | yegW, dicC | 2 | 0.19; 0.12 | 5, 468 |
| yagL-yagM | yafN, nsrR, matA, treR, gadW, dicC, yidZ, deoR, cynR, sfsB, yncC, aaeR | 12 | 0.29; 0.13; 0.11; 0.14; 0.11; 0.22; 0.21; 0.13; 0.12; 0.15; 0.12; 0.12 | 25, 63, 116, 132, 135, 174, 189, 248, 252, 264, 351, 489 |
| yagN | arsR, matA, treR | 3 | 0.26; 0.11; 0.15 | 86, 125, 129 |
| yagP | treR, ypdC, fimZ | 3 | 0.15; 0.14; 0.15 | 116, 212, 216 |
| yagU | cpxR, ulaR, argP, lldR, yncC, cynR | 6 | 1.00; 0.37; 0.36; 0.18; 0.23; 0.10 | 1, 42, 54, 84, 136, 304 |
| yahA | nsrR, ypdC, cbl, cysB, fimZ, ttk, ulaR | 7 | 0.19; 0.22; 0.18; 0.21; 0.18; 0.17; 0.13 | 20, 83, 100, 104, 170, 251, 278 |
| yahB | envY, lldR, melR, cysB, dicA, ttk | 6 | 0.12; 0.15; 0.13; 0.15; 0.11; 0.10 | 107, 134, 157, 211, 332, 480 |
| yahC | tyrR, envY, aaeR | 3 | 0.14; 0.12; 0.21 | 86, 107, 229 |
| yahD-yahE-yahF-yahG | envY, aaeR | 2 | 0.12; 0.21 | 109, 228 |
| yahE | ttk, rutR | 2 | 0.46; 0.12 | 24, 115 |
| yahH | dicC | 1 | 0.14 | 369 |
| yahI-yahJ | dicC | 1 | 0.14 | 368 |
| yahK | yeiE, yddM, nagC, mraZ, ypdC | 5 | 0.25; 0.13; 0.10; 0.14; 0.22 | 36, 46, 77, 78, 79 |
| yahL | dicA, yjjQ, tyrR, nac, aaeR, sxy, sfsB | 7 | 0.52; 0.32; 0.12; 0.26; 0.23; 0.10; 0.11 | 9, 74, 115, 129, 202, 357, 384 |
| yahM | ydfH, cysB, yagI, arsR | 4 | 0.21; 0.18; 0.10; 0.11 | 3, 156, 232, 414 |
| yahN | envY, ybiH, dicC, yafN, fimZ | 5 | 0.52; 0.17; 0.41; 0.12; 0.13 | 4, 5, 34, 185, 249 |
| yahO | ybiH, dicC, yafN, fimZ | 4 | 0.17; 0.41; 0.12; 0.13 | 6, 34, 184, 248 |
| yahV | yjjQ, cbl, yeiE, dicA, nrdR, fimZ, iclR, aaeR | 8 | 0.34; 0.18; 0.13; 0.19; 0.11; 0.18; 0.18; 0.13 | 54, 101, 118, 127, 156, 169, 258, 426 |
| yaiA-aroM | ypdC, gadW | 2 | 0.27; 0.14 | 57, 92 |
| yaiC | yfeC, cusR, deoR, yidZ | 4 | 0.95; 0.17; 0.17; 0.12 | 2, 18, 145, 416 |
| yaiI-aroL-yaiA-aroM-yaiE-ykiA,yaiI-aroL-yaiA,yaiI | yidZ, argP, yfeC, iclR, dicC | 5 | 0.39; 0.36; 0.12; 0.28; 0.17 | 50, 53, 73, 80, 272 |
| yaiL | iscR, yidZ, dicA, aaeR | 4 | 0.11; 0.16; 0.10; 0.13 | 133, 289, 349, 428 |
| yaiO | dgsA, tyrR, iscR, aaeR, yncC, yidZ | 6 | 0.15; 0.12; 0.10; 0.23; 0.14; 0.12 | 44, 125, 141, 197, 280, 423 |
| yaiP | ypdC, cpxR, yafN, nac, iclR, cysB | 6 | 0.44; 0.11; 0.14; 0.18; 0.18; 0.11 | 15, 141, 144, 198, 240, 329 |
| yaiS | cadC, cpxR, dicA, sfsB, yeiI | 5 | 0.13; 0.11; 0.18; 0.12; 0.12 | 86, 139, 153, 332, 393 |
| yaiT | cynR, ybiH, lldR, cusR, nrdR, argP, yidZ, yeiI, dicC | 9 | 0.33; 0.11; 0.25; 0.10; 0.12; 0.23; 0.12; 0.10; 0.11 | 30, 41, 45, 61, 137, 164, 433, 468, 491 |
| yaiV | aaeR, yjiR, argR, sfsB, arsR | 5 | 1.00; 0.11; 0.14; 0.11; 0.12 | 1, 31, 276, 359, 403 |
| yaiW | galS, cadC | 2 | 0.21; 0.13 | 11, 82 |
| yaiX | tyrR, dicC, basR, gcvA, cynR, yfeC, nac, dicA | 8 | 0.21; 0.36; 0.11; 0.18; 0.21; 0.10; 0.25; 0.13 | 32, 44, 61, 77, 92, 110, 139, 277 |
| yaiY | ompR, basR, nac, treR, argR, uxuR, gadW, dicA, ypdC | 9 | 0.29; 0.21; 0.74; 0.33; 0.29; 0.19; 0.11; 0.15; 0.12 | 5, 10, 10, 19, 78, 94, 140, 217, 250 |
| yaiZ | ompR, nac, basR, treR, uxuR, argR, gadW, dicA, ypdC | 9 | 0.29; 0.74; 0.21; 0.33; 0.37; 0.29; 0.11; 0.15; 0.12 | 4, 10, 11, 19, 19, 79, 140, 217, 250 |
| yajC-secD,yajC,yajC-secD-secF | lldR, uxuR | 2 | 0.11; 0.11 | 232, 259 |
| yajD | iscR, ycjW, sxy, arsR, ypdC | 5 | 0.15; 0.11; 0.19; 0.16; 0.10 | 65, 85, 171, 254, 344 |
| yajI | racR, rutR, relE, ulaR | 4 | 0.14; 0.21; 0.12; 0.13 | 24, 32, 102, 290 |
| yajL-panE | sfsB, yagI, dicA, yeiI | 4 | 0.19; 0.13; 0.17; 0.15 | 172, 176, 177, 293 |
| yajO | racR, ttk, dicC | 3 | 0.29; 0.42; 0.14 | 5, 42, 344 |
| yajO-dxs-ispA-xseB,dxs-ispA-xseB | sfsB, matA, cbl, yafN, ybaQ, ttk, yeiI | 7 | 0.55; 0.17; 0.21; 0.18; 0.25; 0.18; 0.18 | 16, 45, 67, 87, 156, 225, 242 |
| yajQ | sfsB, dicA, yeiI | 3 | 0.19; 0.17; 0.15 | 171, 176, 292 |
| yajR | ycjW, fimZ, yeiI, dicC, melR, ypdC | 6 | 0.16; 0.32; 0.36; 0.23; 0.13; 0.10 | 38, 70, 75, 154, 161, 342 |
| ybaA | yidZ, lldR, yfeC, cysB, ybaQ | 5 | 0.39; 0.17; 0.10; 0.20; 0.19 | 48, 97, 117, 127, 256 |
| ybaB-recR | uxuR, dicA, basR, argP | 4 | 0.36; 0.28; 0.11; 0.12 | 20, 44, 62, 378 |
| ybaE | cbl, relE, yagI, uxuR, argR, ypdC, yncC, aaeR | 8 | 0.23; 0.18; 0.20; 0.17; 0.14; 0.12; 0.13; 0.12 | 51, 54, 70, 116, 246, 290, 303, 486 |
| ybaK | yhfR, sfsB, dgsA, glnG | 4 | 0.10; 0.34; 0.12; 0.11 | 51, 72, 99, 115 |
| ybaL | yidZ, matA, marA, yfeC, nac, argR, dicC, iclR | 8 | 0.61; 0.18; 0.10; 0.11; 0.30; 0.20; 0.20; 0.11 | 14, 36, 47, 94, 101, 136, 223, 467 |
| ybaM-priC | arsR | 1 | 0.19 | 175 |
| ybaN-apt,ybaN | uxuR, arsR | 2 | 0.11; 0.10 | 267, 454 |
| ybaO-mdlA,ybaO | marA, nsrR, melR, ttk | 4 | 0.21; 0.12; 0.10; 0.14 | 7, 78, 226, 328 |
| ybaP | cbl, aaeR | 2 | 0.22; 0.15 | 58, 347 |
| ybaQ | aaeR | 1 | 0.15 | 346 |
| ybaV | sxy, nagC, lldR | 3 | 0.78; 0.13; 0.12 | 5, 45, 200 |
| ybaY | ybaQ | 1 | 0.60 | 16 |
| ybaZ | yidZ, yeiI, lldR, yfeC, cysB, ybaQ | 6 | 0.39; 0.33; 0.17; 0.10; 0.20; 0.19 | 48, 94, 97, 117, 126, 256 |
| ybbA,ybbA-ybbP | ypdC, marA, deoR | 3 | 0.75; 0.12; 0.16 | 2, 32, 167 |
| ybbJ-qmcA | kdgR, nac | 2 | 0.14; 0.13 | 19, 316 |
| ybbN | ybaQ, yeiI | 2 | 0.23; 0.20 | 191, 211 |
| ybbN-ybbO | dicA, deoR | 2 | 0.19; 0.16 | 130, 168 |
| ybbN-ybbO-tesA,ybbO-tesA | ypdC, marA, uxuR | 3 | 0.75; 0.12; 0.14 | 3, 33, 172 |
| ybbY-glxK | pdhR, sxy, yidZ, yjjQ, deoR, yeiI | 6 | 0.13; 0.23; 0.22; 0.18; 0.13; 0.11 | 47, 114, 176, 187, 241, 438 |
| ybcH | yncC, pdhR, ulaR | 3 | 0.85; 0.13; 0.16 | 12, 51, 217 |
| ybcH-nfrA,nfrA | pspF, yagI, iscR, sxy, ybaQ, yidZ, yjjQ, deoR | 8 | 0.13; 0.24; 0.11; 0.18; 0.18; 0.16; 0.12; 0.10 | 15, 56, 132, 188, 278, 293, 316, 342 |
| ybcJ-folD | gcvA, yncC | 2 | 0.18; 0.13 | 78, 324 |
| ybcK | argP, envY, ulaR, nac, fimZ, sxy, yncC, aaeR | 8 | 0.57; 0.11; 0.19; 0.21; 0.16; 0.13; 0.12; 0.13 | 16, 136, 147, 173, 196, 281, 355, 431 |
| ybcL-ybcM | ybcM, rutR, cbl, yfeC, argR, melR, cysB, cynR, ulaR, dicC, yncC, nac, yjjQ | 13 | 0.51; 0.25; 0.28; 0.19; 0.39; 0.20; 0.24; 0.21; 0.23; 0.24; 0.18; 0.16; 0.14 | 3, 20, 28, 28, 48, 66, 81, 86, 110, 121, 189, 231, 260 |
| ybcN-ninE-ybcO-rusA-ylcG | ypdC, fimZ, nsrR, cysB, sxy, arsR, iclR, dicC | 8 | 0.35; 0.41; 0.12; 0.16; 0.17; 0.17; 0.14; 0.13 | 36, 38, 67, 181, 210, 226, 357, 376 |
| ybcV | pepA, pdhR, allR, yfeC, exuR, envY, aaeR, yeiI | 8 | 0.12; 0.18; 0.15; 0.16; 0.13; 0.10; 0.21; 0.15 | 19, 23, 29, 44, 54, 142, 234, 289 |
| ybcW | pepA, pdhR, allR, yfeC, exuR, envY, aaeR, yeiI | 8 | 0.12; 0.18; 0.15; 0.16; 0.13; 0.10; 0.21; 0.16 | 19, 23, 29, 45, 54, 142, 234, 280 |
| ybcY | ygiT, yhjC, aaeR, galS, relE, yfeC, yagI, lldR | 8 | 0.17; 0.12; 0.47; 0.12; 0.14; 0.11; 0.16; 0.14 | 5, 18, 35, 74, 86, 101, 130, 139 |
| ybdD | exuR, argR, ttk, treR, aaeR, yidZ | 6 | 0.14; 0.36; 0.21; 0.10; 0.19; 0.16 | 42, 55, 173, 211, 270, 286 |
| ybdF,nfsB-ybdF | aaeR, dicA, argR | 3 | 0.33; 0.19; 0.16 | 107, 135, 211 |
| ybdG | ybaQ, argR, yjjQ | 3 | 0.36; 0.20; 0.15 | 66, 149, 243 |
| ybdG-nfsB,nfsB | ybaQ, dgsA, argR | 3 | 0.34; 0.12; 0.16 | 71, 101, 212 |
| ybdH | ulaR, mraZ, deoR, argP, ttk, yeiI | 6 | 0.44; 0.13; 0.11; 0.14; 0.14; 0.12 | 21, 89, 309, 324, 344, 360 |
| ybdJ | aaeR, dicA | 2 | 0.33; 0.19 | 106, 136 |
| ybdK | nac, lexA, ulaR, cynR, lldR | 5 | 0.56; 0.12; 0.29; 0.21; 0.15 | 20, 22, 65, 87, 117 |
| ybdL | mraZ, deoR, argP, yeiI | 4 | 0.13; 0.11; 0.14; 0.12 | 89, 310, 325, 361 |
| ybdM | iclR, yafN, yjjQ, mraZ, arsR, lldR, yeiI | 7 | 0.33; 0.20; 0.31; 0.13; 0.20; 0.11; 0.16 | 51, 61, 79, 83, 161, 230, 279 |
| ybdN | treR, yfeC, dicA, tyrR, ulaR, glnG, melR, cynR, iclR | 9 | 0.41; 0.41; 0.26; 0.17; 0.23; 0.11; 0.11; 0.13; 0.12 | 5, 5, 63, 64, 100, 122, 197, 226, 442 |
| ybdO | basR, yncC, yidZ, cysB, arsR, aaeR, sfsB, yjjQ | 8 | 0.19; 0.19; 0.21; 0.15; 0.17; 0.20; 0.14; 0.11 | 16, 183, 197, 215, 224, 257, 275, 319 |
| ybdR | relE, treR, gcvA, yncC, uxuR | 5 | 0.10; 0.11; 0.11; 0.15; 0.11 | 137, 184, 216, 253, 258 |
| ybeD-dacA-rlpA | ycjW, envY, relE | 3 | 0.16; 0.11; 0.10 | 39, 120, 136 |
| ybeF | dgsA, yidZ, srlR, yncC, argR, aaeR, yeiE, arsR, nac, yagI, cynR, yeiI, ulaR, dicC | 14 | 0.26; 0.45; 0.10; 0.45; 0.25; 0.33; 0.13; 0.23; 0.26; 0.14; 0.16; 0.22; 0.13; 0.10 | 14, 27, 47, 53, 90, 105, 119, 130, 131, 150, 162, 173, 258, 516 |
| ybeL | ttk, ypdC, argR, argP | 4 | 0.30; 0.19; 0.21; 0.12 | 89, 127, 129, 371 |
| ybeM | iscR, sfsB, yncC, yeiI | 4 | 0.11; 0.21; 0.21; 0.17 | 126, 153, 155, 262 |
| ybeQ | yafN, nrdR, yeiE, yncC, cynR, yjjQ | 6 | 0.29; 0.16; 0.15; 0.15; 0.11; 0.11 | 22, 71, 108, 250, 263, 328 |
| ybeR-djlB | yafN, cynR, nrdR, yeiE, yncC, yjjQ | 6 | 0.29; 0.34; 0.16; 0.15; 0.15; 0.11 | 21, 24, 72, 109, 251, 329 |
| ybeT | cysB, ybiH, yagI, sxy, nac, arsR, aaeR | 7 | 0.35; 0.12; 0.11; 0.15; 0.11; 0.12; 0.13 | 30, 34, 216, 245, 372, 390, 433 |
| ybeU-djlC | ybiH, exuR, nsrR, lldR, sxy, argR, nac, arsR, aaeR | 9 | 0.12; 0.14; 0.11; 0.11; 0.15; 0.13; 0.11; 0.12; 0.13 | 38, 39, 104, 235, 244, 298, 373, 390, 433 |
| ybeX-ybeY-ybeZ-miaB,ybeY-ybeZ-miaB,miaB | mraZ, sxy, arsR, yeiI | 4 | 0.10; 0.12; 0.13; 0.12 | 137, 328, 358, 386 |
| ybfA | dgsA, dicA, argP | 3 | 0.38; 0.21; 0.11 | 7, 111, 424 |
| ybfD | trpR, cysB, basR, cadC, yjjQ, yagI, arsR, ttk | 8 | 0.15; 0.28; 0.11; 0.13; 0.23; 0.13; 0.15; 0.13 | 14, 47, 56, 81, 125, 158, 267, 387 |
| ybfF,fldA-ybfE-ybfF | yncC, ybaQ, iclR | 3 | 0.26; 0.24; 0.10 | 121, 172, 488 |
| ybfH | cadC, dgsA, argP, nrdR, dicC, yafN, aaeR, arsR | 8 | 0.13; 0.13; 0.24; 0.11; 0.21; 0.12; 0.21; 0.11 | 78, 92, 154, 157, 189, 193, 243, 425 |
| ybfK | gcvA, aaeR, sfsB | 3 | 0.28; 0.26; 0.15 | 37, 170, 261 |
| ybfL | yegW, cpxR, cysB, yheO, ulaR, yeiI, cadC, yagI, yjjQ, arsR, aaeR | 11 | 0.12; 0.25; 0.33; 0.16; 0.26; 0.31; 0.10; 0.15; 0.22; 0.17; 0.17 | 17, 18, 34, 42, 76, 98, 122, 141, 142, 225, 308 |
| ybfP | ybaQ, mraZ, sxy, aaeR, melR, iclR | 6 | 0.45; 0.13; 0.18; 0.22; 0.10; 0.10 | 35, 91, 187, 216, 237, 493 |
| ybfQ | cpxR, nrdR, dgsA, ulaR, dicC, arsR, fimZ, aaeR | 8 | 0.26; 0.19; 0.12; 0.21; 0.21; 0.16; 0.12; 0.17 | 17, 44, 108, 125, 196, 240, 278, 309 |
| ybgA-phr | ttk, ypdC, arsR | 3 | 0.51; 0.22; 0.26 | 18, 80, 94 |
| ybgC-tolQ-tolR-tolA,ybgC-tolQ-tolR-tolA-tolB | arsR, yjjQ, argP, sxy, ttk | 5 | 0.33; 0.18; 0.19; 0.14; 0.11 | 58, 194, 218, 260, 460 |
| ybgD | ybaQ, cynR, argR, sfsB, yncC, argP, aaeR | 7 | 0.40; 0.23; 0.21; 0.18; 0.12; 0.11; 0.12 | 50, 63, 123, 188, 348, 401, 457 |
| ybgE-cydX | arsR, rutR, ttk, dicC, dicA | 5 | 0.33; 0.12; 0.19; 0.18; 0.13 | 57, 126, 204, 243, 278 |
| ybgI-ybgJ-ybgK-ybgL,ybgI-ybgJ-ybgK-ybgL-nei | ydfH, yeaT, argR, melR, yheO, gcvA, ybaQ | 7 | 0.14; 0.11; 0.47; 0.22; 0.10; 0.12; 0.10 | 4, 9, 30, 57, 131, 162, 548 |
| ybgS | iscR, envY, yagI, dicC | 4 | 0.17; 0.11; 0.11; 0.11 | 44, 117, 204, 473 |
| ybgU | nac, ypdC, nrdR, cynR, gcvA, yfeC, lldR, dicA, dicC, cysB, ybaQ | 11 | 0.79; 0.41; 0.18; 0.23; 0.17; 0.11; 0.15; 0.14; 0.14; 0.10; 0.12 | 6, 20, 47, 67, 91, 98, 128, 245, 332, 364, 496 |
| ybgV | nac, nrdR, cynR, gcvA, yfeC, lldR, dicA, dicC, cysB, ybaQ | 10 | 0.79; 0.18; 0.23; 0.17; 0.11; 0.15; 0.14; 0.14; 0.10; 0.12 | 8, 47, 65, 89, 99, 130, 244, 334, 363, 497 |
| ybhA | ytfH, yeiI, arsR, ttk | 4 | 0.12; 0.28; 0.14; 0.11 | 3, 124, 314, 464 |
| ybhB | uxuR, relE, envY | 3 | 0.31; 0.14; 0.13 | 26, 77, 81 |
| ybhB-bioA,ybhC-ybhB-bioA,bioA | yfeC, yjjQ | 2 | 0.11; 0.12 | 86, 310 |
| ybhC | cysB, nac, iclR | 3 | 0.22; 0.14; 0.13 | 91, 302, 405 |
| ybhD | ybhD, yddM, ulaR, sfsB | 4 | 1.00; 0.32; 0.19; 0.16 | 2, 2, 158, 249 |
| ybhH | ybhD, yddM, ulaR, arsR, sfsB | 5 | 1.00; 0.32; 0.19; 0.17; 0.16 | 1, 2, 157, 213, 248 |
| ybhI | nac, sfsB, yafN, ulaR, yncC, yjjQ | 6 | 0.40; 0.32; 0.15; 0.12; 0.12; 0.10 | 39, 86, 119, 305, 352, 368 |
| ybhJ | ttk, cbl, argR, nac | 4 | 0.62; 0.19; 0.11; 0.10 | 7, 94, 330, 414 |
| ybhK | iclR, gadW, sxy, glnG, cysB | 5 | 0.31; 0.17; 0.27; 0.11; 0.13 | 57, 66, 85, 105, 257 |
| ybhL | yjjQ, basR, cbl, argR, sxy | 5 | 0.82; 0.11; 0.16; 0.20; 0.12 | 6, 66, 131, 145, 307 |
| ybhM | yfeC, lldR, sfsB, arsR, dicC | 5 | 0.15; 0.12; 0.17; 0.13; 0.11 | 52, 218, 218, 343, 481 |
| ybhN-clsB-ybhP | iclR, yidZ | 2 | 0.23; 0.18 | 146, 245 |
| ybhQ | iclR | 1 | 0.23 | 147 |
| ybhR-ybhS-ybhF-ybhG-ybiH,ybhF-ybhG-ybiH | ybiH, yciT, fimZ, relE, iscR, cbl, argR | 7 | 1.00; 0.19; 0.56; 0.12; 0.12; 0.12; 0.13 | 1, 9, 19, 95, 101, 198, 302 |
| ybiA | argR, nrdR, yjiR, gcvA, cysB, mraZ, sxy, yeiI, yidZ | 9 | 0.74; 0.24; 0.12; 0.22; 0.20; 0.10; 0.21; 0.19; 0.12 | 11, 21, 21, 55, 121, 133, 136, 232, 430 |
| ybiB,ybiB-ybiC | yeiE | 1 | 0.54 | 9 |
| ybiC | ttk, argR, iclR, yidZ | 4 | 0.65; 0.15; 0.14; 0.10 | 5, 239, 351, 496 |
| ybiE | hcaR, nac, treR, exuR, lldR | 5 | 0.15; 0.58; 0.30; 0.10; 0.13 | 19, 19, 23, 99, 188 |
| ybiI | cusR | 1 | 0.11 | 58 |
| ybiJ | yhaJ, tyrR, gcvA, yfeC, lldR, treR, cynR, dicA, argP | 9 | 0.29; 0.26; 0.34; 0.16; 0.18; 0.14; 0.11; 0.11; 0.13 | 13, 20, 21, 46, 88, 139, 283, 324, 339 |
| ybiJ-ybiI-ybiX-ybiL,ybiI-ybiX-ybiL,ybiL | ulaR, iclR, dicA, yeiI, dicC, yidZ | 6 | 0.59; 0.47; 0.22; 0.25; 0.13; 0.11 | 9, 16, 106, 140, 382, 453 |
| ybiO | yciT, ybhD, exuR, sxy, argP | 5 | 0.14; 0.15; 0.17; 0.18; 0.15 | 20, 22, 30, 194, 304 |
| ybiT | ycjW, allR, nsrR, treR, rutR, yeiI, cysB, argR, arsR | 9 | 0.11; 0.10; 0.10; 0.13; 0.10; 0.22; 0.16; 0.11; 0.11 | 88, 102, 115, 141, 147, 172, 183, 335, 426 |
| ybiU | yciT, gadW, mraZ, yeiE, cysB | 5 | 0.93; 0.40; 0.15; 0.14; 0.13 | 3, 8, 57, 110, 286 |
| ybiV | yciT, deoR, cbl, nagC, arsR | 5 | 0.29; 0.27; 0.22; 0.12; 0.20 | 5, 36, 53, 53, 159 |
| ybiW-ybiY | yciT, ypdC, arsR | 3 | 1.00; 0.41; 0.16 | 1, 18, 251 |
| ybiX | nsrR, arsR, yncC, iclR, yeiI | 5 | 0.12; 0.26; 0.22; 0.23; 0.10 | 74, 87, 143, 145, 455 |
| ybjC-nfsA-rimK-ybjN | matA, cbl, galS, melR, envY, ttk, yncC | 7 | 0.20; 0.19; 0.11; 0.16; 0.10; 0.17; 0.13 | 30, 87, 93, 110, 141, 259, 320 |
| ybjD | cysB, iscR, matA, aaeR, argP | 5 | 0.27; 0.14; 0.11; 0.28; 0.11 | 59, 82, 135, 146, 409 |
| ybjE | asnC, ybiH, ompR, ybaQ, cysB | 5 | 0.20; 0.16; 0.11; 0.21; 0.14 | 4, 10, 20, 220, 242 |
| ybjH | mraZ, fimZ | 2 | 0.20; 0.13 | 21, 244 |
| ybjI-ybjJ | ycgE, treR, yeiI, ulaR | 4 | 0.13; 0.22; 0.27; 0.14 | 6, 52, 131, 255 |
| ybjK | ycgE, treR | 2 | 0.13; 0.22 | 5, 51 |
| ybjL-rybB,ybjL | fabR, deoR, yafN, dgsA, aaeR, tyrR | 6 | 0.11; 0.34; 0.22; 0.14; 0.37; 0.12 | 13, 19, 51, 73, 78, 116 |
| ybjM | basR, fabR, deoR, yafN, dgsA, aaeR, tyrR | 7 | 0.23; 0.11; 0.34; 0.22; 0.14; 0.37; 0.12 | 7, 13, 20, 51, 73, 78, 116 |
| ybjN,ybjN-potF | nrdR, ybaQ, yncC | 3 | 0.15; 0.26; 0.16 | 80, 129, 227 |
| ybjO-rlmC | arsR | 1 | 0.37 | 38 |
| ybjP | sxy, matA, arsR, cysB | 4 | 1.00; 0.17; 0.22; 0.18 | 3, 46, 142, 158 |
| ybjQ-amiD | sxy, arsR, cysB, treR, yidZ, fimZ, ttk | 7 | 1.00; 0.22; 0.18; 0.12; 0.17; 0.12; 0.10 | 3, 142, 157, 180, 258, 274, 491 |
| ybjS | lldR, rutR, deoR, ybaQ | 4 | 0.23; 0.13; 0.14; 0.13 | 54, 106, 207, 430 |
| ybjT-ltaE,ybjS-ybjT-ltaE | nsrR | 1 | 0.12 | 75 |
| ybjX | cynR, relE, dicC, arsR, yeiI | 5 | 0.27; 0.12; 0.19; 0.14; 0.10 | 44, 99, 232, 286, 463 |
| ycaC | iclR, yhaJ, argP, cynR | 4 | 0.44; 0.12; 0.32; 0.12 | 21, 63, 76, 241 |
| ycaD | iclR, yhaJ, argP, cynR | 4 | 0.44; 0.12; 0.32; 0.12 | 21, 63, 76, 240 |
| ycaI-msbA-lpxK-ycaQ | sxy, yheO, argR, yidZ | 4 | 0.53; 0.13; 0.20; 0.12 | 21, 57, 141, 411 |
| ycaK | ybhD, trpR, argP, gcvA, ybaQ, yagI, ypdC | 7 | 0.16; 0.10; 0.28; 0.13; 0.25; 0.12; 0.14 | 19, 33, 110, 140, 146, 182, 201 |
| ycaL | ulaR, treR, ypdC, aaeR, lldR, nac, yidZ, deoR, iclR | 9 | 0.40; 0.16; 0.17; 0.24; 0.12; 0.16; 0.18; 0.12; 0.10 | 24, 106, 145, 183, 215, 248, 256, 268, 494 |
| ycaM | asnC, cysB, cpxR, nagC, cbl, nrdR, yeiI, cynR | 8 | 0.10; 0.28; 0.16; 0.11; 0.16; 0.10; 0.18; 0.11 | 25, 45, 55, 59, 118, 195, 258, 268 |
| ycaN | ybhD, trpR, argP, ybaQ, cysB | 5 | 0.16; 0.10; 0.28; 0.25; 0.12 | 18, 32, 109, 147, 311 |
| ycaO,focA-ycaO | cysB, yafN | 2 | 0.17; 0.11 | 163, 211 |
| ycaP | fimZ, cysB | 2 | 0.19; 0.17 | 157, 162 |
| ycaR-kdsB,ycaR-kdsB-ycbJ | argP, iscR, cbl, treR, ybaQ | 5 | 0.53; 0.16; 0.21; 0.16; 0.13 | 23, 53, 68, 112, 433 |
| ycbJ | yjjQ, dicA | 2 | 0.38; 0.10 | 42, 355 |
| ycbK-ycbL | basR, nsrR, dicA, argP, cysB, arsR | 6 | 0.13; 0.14; 0.19; 0.25; 0.17; 0.12 | 39, 47, 129, 144, 173, 366 |
| ycbL | glnG, ybaQ, dicC | 3 | 0.13; 0.24; 0.16 | 91, 173, 298 |
| ycbX | glpR, cysB, yafN, fimZ, nac | 5 | 0.15; 0.38; 0.15; 0.19; 0.13 | 6, 22, 127, 158, 336 |
| yccE | arsR, nrdR, yjjQ, ygiT, fimZ, argR, ypdC, iclR, yeiI | 9 | 0.66; 0.36; 0.48; 0.12; 0.20; 0.19; 0.10; 0.15; 0.12 | 5, 5, 24, 27, 149, 159, 328, 332, 364 |
| yccJ-wrbA | argP, cynR, arsR, ulaR, cysB, nac | 6 | 0.41; 0.18; 0.18; 0.14; 0.11; 0.12 | 35, 124, 202, 245, 324, 351 |
| yccM | yhfR, melR, ypdC, yjjQ, cysB, nac | 6 | 0.17; 0.20; 0.16; 0.13; 0.12; 0.10 | 7, 67, 171, 294, 300, 404 |
| yccT | aaeR, ybaQ, nac, dicC, iclR | 5 | 0.34; 0.20; 0.10; 0.12; 0.10 | 94, 238, 407, 450, 507 |
| yccU | aaeR, ybaQ, nac, dicC, iclR | 5 | 0.34; 0.20; 0.10; 0.12; 0.10 | 95, 239, 408, 451, 508 |
| yccX | ydjF, treR, rutR, yidZ, lldR | 5 | 0.11; 0.16; 0.11; 0.20; 0.10 | 44, 111, 141, 213, 274 |
| ycdT | yjjQ, racR, dgsA, gcvA, argP, nac, argR, dicC, cysB | 9 | 0.41; 0.12; 0.14; 0.17; 0.22; 0.18; 0.16; 0.19; 0.10 | 28, 38, 65, 93, 178, 207, 218, 237, 354 |
| ycdX-ycdY,ycdX-ycdY-ycdZ | nsrR, yfeC, cysB, ulaR | 4 | 0.17; 0.12; 0.24; 0.11 | 24, 72, 74, 339 |
| ycdZ | mraZ, ttk, glnG, nac | 4 | 0.14; 0.27; 0.10; 0.10 | 68, 109, 141, 395 |
| yceA | cusR, ybaQ, dgsA, gcvA, dicC, exuR, nac, glnG, yeiE, yeiI | 10 | 0.13; 0.42; 0.15; 0.19; 0.30; 0.11; 0.28; 0.10; 0.12; 0.21 | 34, 43, 48, 69, 73, 76, 109, 133, 143, 188 |
| yceB | argR, aaeR, dicC | 3 | 0.22; 0.19; 0.15 | 114, 272, 322 |
| yceB-grxB,grxB | rutR, yhaJ, yagI, uxuR, yncC, ttk, arsR | 7 | 0.26; 0.12; 0.12; 0.12; 0.11; 0.11; 0.10 | 16, 62, 196, 227, 365, 439, 458 |
| yceD-rpmF-plsX-fabH-fabD,yceD-rpmF-plsX-fabH,yceD-rpmF | arsR, ypdC, aaeR | 3 | 0.24; 0.16; 0.13 | 112, 168, 436 |
| yceF | arsR, ypdC, aaeR | 3 | 0.24; 0.16; 0.13 | 111, 167, 438 |
| yceG-tmk | yjjQ, argR | 2 | 0.21; 0.11 | 154, 340 |
| yceH | arsR, aaeR, iclR, yeiI, ybaQ | 5 | 0.26; 0.26; 0.19; 0.16; 0.11 | 91, 173, 225, 277, 502 |
| yceI | yeiE, nac, deoR, ybaQ | 4 | 0.30; 0.21; 0.14; 0.18 | 27, 174, 218, 301 |
| yceI-yceJ | cynR, srlR, yeiE, ybhD, argR, cpxR, iclR, nagC, dgsA, ttk, yjjQ, nac, lldR, sfsB, ulaR, argP, aaeR | 17 | 0.52; 0.16; 0.30; 0.12; 0.46; 0.18; 0.33; 0.10; 0.13; 0.29; 0.26; 0.21; 0.13; 0.16; 0.10; 0.10; 0.10 | 4, 18, 28, 35, 35, 39, 49, 65, 93, 96, 105, 175, 182, 224, 358, 426, 533 |
| yceJ-yceO-solA,yceO-solA,solA | dgsA, nagC, ycjW, sfsB, uxuR, argP, iclR, ybaQ | 8 | 0.29; 0.24; 0.14; 0.36; 0.22; 0.10; 0.12; 0.11 | 12, 12, 59, 64, 68, 445, 447, 498 |
| yceK | glnG, cysB, yidZ, yafN, sxy | 5 | 0.19; 0.26; 0.22; 0.12; 0.10 | 40, 64, 168, 186, 351 |
| yceM | mraZ, cysB, ybaQ, ttk, yidZ | 5 | 0.19; 0.17; 0.21; 0.15; 0.12 | 27, 160, 224, 292, 432 |
| yceQ | lldR, gcvA, dicA, dicC, argR, deoR | 6 | 0.13; 0.11; 0.15; 0.19; 0.14; 0.12 | 169, 212, 221, 231, 244, 267 |
| ycfJ | ybaQ, yjjQ, treR, sfsB, deoR | 5 | 0.39; 0.26; 0.15; 0.15; 0.11 | 55, 104, 118, 263, 303 |
| ycfP | cadC, arsR, yagI, sfsB | 4 | 0.28; 0.29; 0.19; 0.24 | 12, 72, 102, 129 |
| ycfQ | fimZ, cbl | 2 | 0.26; 0.11 | 101, 230 |
| ycfT | rutR, fimZ, sfsB | 3 | 0.12; 0.13; 0.13 | 123, 251, 297 |
| ycfZ-ymfA | treR, dicA, yidZ, ybaQ | 4 | 0.14; 0.16; 0.14; 0.12 | 136, 197, 329, 447 |
| ycgB | srlR, rutR, yidZ, ypdC, ttk, ybaQ | 6 | 0.10; 0.12; 0.22; 0.15; 0.16; 0.15 | 43, 117, 172, 175, 281, 357 |
| ycgE | ycgE, yafN, ulaR, cpxR, sfsB, deoR | 6 | 0.14; 0.25; 0.23; 0.10; 0.19; 0.13 | 4, 37, 104, 144, 182, 260 |
| ycgG | racR, modE, cysB, dgsA, gcvA, yafN, yjjQ, ttk, iclR | 9 | 0.16; 0.10; 0.23; 0.12; 0.13; 0.12; 0.12; 0.11; 0.11 | 15, 22, 84, 94, 141, 202, 299, 440, 455 |
| ycgH | dicC, iclR, fimZ, yeiE, yidZ, yeiI, aaeR | 7 | 0.46; 0.29; 0.28; 0.15; 0.19; 0.17; 0.19 | 17, 71, 90, 102, 229, 268, 274 |
| ycgJ | racR, gadW, iscR, nac, argR, melR, gcvA, aaeR, dicC | 9 | 0.13; 0.18; 0.16; 0.29; 0.23; 0.12; 0.12; 0.12; 0.11 | 26, 48, 55, 105, 108, 181, 187, 464, 482 |
| ycgL | zur, dicA, nagC, dicC, cpxR, ulaR, melR, aaeR | 8 | 0.34; 0.38; 0.12; 0.27; 0.12; 0.21; 0.11; 0.13 | 4, 15, 46, 92, 103, 133, 221, 449 |
| ycgM,ycgM-ycgN | dicA, matA, galS, nagC, dicC, cpxR, sxy, ulaR | 8 | 0.38; 0.18; 0.14; 0.12; 0.27; 0.12; 0.20; 0.17 | 14, 38, 42, 48, 94, 105, 158, 195 |
| ycgR | dicA, yjjQ, uxuR, nac, aaeR | 5 | 0.20; 0.17; 0.12; 0.17; 0.20 | 117, 205, 214, 223, 254 |
| ycgV | pepA, dicC, gadW, iscR, yheO, gcvA, cysB, fimZ | 8 | 0.11; 0.33; 0.15; 0.13; 0.11; 0.17; 0.22; 0.11 | 23, 54, 77, 87, 95, 97, 98, 302 |
| ycgX | treR, hcaR, yhfR, argR, pdhR, iscR, yeiI, dicC, cynR, ybaQ, nac | 11 | 0.28; 0.12; 0.12; 0.31; 0.11; 0.12; 0.21; 0.18; 0.10; 0.15; 0.11 | 27, 31, 33, 68, 73, 103, 195, 250, 308, 354, 382 |
| ycgY | yafN, uxuR, nac | 3 | 0.14; 0.12; 0.17 | 134, 215, 224 |
| ycgZ-ymgA-ariR-ymgC,ycgZ | ycgE, yhfR, zur, dicC, aaeR, melR, rutR, dicA, matA, yncC, ypdC, ybaQ, arsR | 13 | 1.00; 0.17; 0.17; 0.44; 0.47; 0.24; 0.14; 0.22; 0.12; 0.15; 0.12; 0.15; 0.11 | 2, 9, 11, 22, 37, 47, 97, 102, 112, 265, 280, 367, 423 |
| ychA-kdsA-rdlA | ycjZ, ybaQ, argR, yidZ, sfsB | 5 | 0.13; 0.44; 0.21; 0.22; 0.15 | 12, 38, 131, 169, 251 |
| ychE | dicC, melR, galS, dicA, gadW, cpxR, dgsA, uxuR | 8 | 0.51; 0.27; 0.13; 0.27; 0.14; 0.12; 0.11; 0.11 | 12, 33, 45, 51, 89, 108, 117, 271 |
| ychF | yeiI | 1 | 0.27 | 130 |
| ychF-pth | dicA, tyrR, relE, mraZ, cynR, uxuR, sfsB | 7 | 0.29; 0.16; 0.14; 0.11; 0.13; 0.10; 0.14 | 38, 66, 79, 124, 220, 282, 288 |
| ychH | dicA, tyrR, relE, mraZ, cynR, uxuR | 6 | 0.29; 0.16; 0.14; 0.11; 0.13; 0.10 | 38, 66, 79, 124, 220, 283 |
| ychN | ycjW, yheO, cysB, ttk, yjjQ, treR, yidZ, arsR | 8 | 0.22; 0.19; 0.22; 0.25; 0.19; 0.10; 0.17; 0.15 | 17, 28, 96, 129, 178, 213, 271, 276 |
| ychO | ycjW, yheO, cysB, ttk, yjjQ, treR, arsR | 7 | 0.22; 0.17; 0.22; 0.25; 0.19; 0.10; 0.15 | 18, 35, 96, 128, 178, 212, 276 |
| ychQ-ychA-kdsA | melR, ttk, sfsB | 3 | 0.16; 0.26; 0.15 | 111, 117, 251 |
| ychS | nac, ttk | 2 | 0.19; 0.17 | 191, 250 |
| ychT | dicC, galS, dicA, gadW, cpxR, dgsA, uxuR | 7 | 0.51; 0.13; 0.27; 0.14; 0.12; 0.11; 0.11 | 12, 47, 51, 88, 108, 117, 271 |
| yciA-yciB-yciC,yciB-yciC | fabR, cysB, gadW, ulaR, arsR, iclR, deoR | 7 | 0.15; 0.32; 0.11; 0.20; 0.19; 0.21; 0.10 | 9, 36, 134, 145, 177, 179, 353 |
| yciE | srlR, iscR, dicC, aaeR, yeiI | 5 | 0.12; 0.13; 0.25; 0.24; 0.11 | 29, 86, 107, 189, 402 |
| yciE-yciF-yciG,yciG | cusR, yfeC, yncC, sfsB, fimZ, argP, yjjQ, dicC, ttk, aaeR | 10 | 0.14; 0.16; 0.31; 0.26; 0.16; 0.15; 0.11; 0.13; 0.11; 0.11 | 27, 34, 90, 108, 197, 300, 320, 416, 466, 493 |
| yciI | cynR, iscR | 2 | 0.19; 0.12 | 113, 115 |
| yciN | ttk, deoR, yncC | 3 | 0.42; 0.19; 0.15 | 40, 108, 247 |
| yciO | rutR, matA | 2 | 0.15; 0.11 | 75, 122 |
| yciS-yciM,yciS-yciM-pyrF-yciH | iclR, gcvA, yidZ, dicA | 4 | 0.75; 0.34; 0.42; 0.13 | 4, 20, 32, 269 |
| yciT | cpxR, nac, nrdR, relE, melR, yncC, dicC, iclR | 8 | 0.18; 0.40; 0.18; 0.14; 0.10; 0.13; 0.13; 0.12 | 34, 45, 52, 83, 230, 300, 379, 449 |
| yciT-yciZ | nrdR, nac, yncC, iclR | 4 | 0.18; 0.34; 0.13; 0.12 | 54, 72, 301, 449 |
| yciU-clsA | yfeC, uxuR, nsrR, iclR, argP | 5 | 0.11; 0.17; 0.10; 0.13; 0.10 | 88, 109, 118, 399, 441 |
| yciV-yciO,yciV-yciO-yciQ | trpR, iclR, cysB, ybaQ | 4 | 0.29; 0.31; 0.13; 0.18 | 4, 63, 276, 297 |
| yciY | yfeC, uxuR, nsrR, iclR, dicC, argP | 6 | 0.11; 0.17; 0.10; 0.13; 0.12; 0.10 | 89, 110, 118, 400, 431, 440 |
| ycjD | ulaR, aaeR, ypdC, sxy | 4 | 0.20; 0.27; 0.11; 0.10 | 143, 159, 295, 354 |
| ycjG | dicC, tyrR, yagI, melR, yeiE, lldR, ybaQ, deoR, yeiI, argP | 10 | 0.42; 0.17; 0.19; 0.18; 0.13; 0.11; 0.19; 0.12; 0.14; 0.13 | 31, 54, 80, 88, 135, 259, 274, 284, 316, 347 |
| ycjM-ycjN-ycjO-ycjP-ycjQ-ycjR-ycjS-ycjT-ycjU-ycjV-ompG-ymjB | ycjW, yeiI, sfsB, tyrR, nsrR, envY, argP, aaeR | 8 | 1.00; 0.85; 0.41; 0.18; 0.11; 0.12; 0.23; 0.14 | 1, 5, 45, 51, 99, 112, 170, 413 |
| ycjW | ycjZ, yhfR, yagI, sxy | 4 | 0.16; 0.12; 0.19; 0.15 | 7, 28, 83, 242 |
| ycjX,ycjX-ycjF-tyrR,ycjX-ycjF | ycjZ, yhfR, yagI, sxy | 4 | 0.16; 0.12; 0.19; 0.15 | 7, 29, 84, 243 |
| ycjZ | ycjZ, gcvA, ybaQ, argP, ttk, aaeR | 6 | 1.00; 0.11; 0.21; 0.19; 0.13; 0.12 | 1, 203, 222, 229, 391, 455 |
| ydaG-ydaF | racR, ydaS, cynR, lldR, dicC, yeiI, arsR, iclR | 8 | 1.00; 0.15; 0.27; 0.17; 0.27; 0.28; 0.13; 0.14 | 1, 3, 43, 95, 96, 119, 339, 368 |
| ydaM | yafN, ybhD, treR | 3 | 0.38; 0.11; 0.19 | 9, 44, 75 |
| ydaN-fnrS,ydaN | yafN, ybhD, treR | 3 | 0.38; 0.11; 0.19 | 9, 44, 74 |
| ydaS-ydaT-ydaU-ydaV-ydaW-rzpR | ydaS, racR, cynR, gcvA, exuR, yeiE, yjjQ, ttk, dicC | 9 | 1.00; 0.61; 0.21; 0.18; 0.10; 0.13; 0.20; 0.21; 0.12 | 1, 3, 82, 86, 95, 133, 174, 180, 456 |
| ydbA | cynR, dgsA, nrdR, rutR, gadW, nac, aaeR, argP | 8 | 0.40; 0.13; 0.14; 0.13; 0.12; 0.24; 0.24; 0.11 | 9, 86, 101, 104, 110, 150, 190, 417 |
| ydbC | yhaJ, sfsB | 2 | 0.17; 0.25 | 30, 109 |
| ydbD | betI, pdhR, gadW, arsR | 4 | 0.17; 0.15; 0.11; 0.11 | 5, 39, 129, 429 |
| ydbH-ynbE-ydbL | yheO, tyrR, yncC, fimZ, argR, nac | 6 | 0.65; 0.34; 0.27; 0.12; 0.14; 0.10 | 4, 6, 114, 276, 277, 396 |
| ydbJ | gadW, glnG, rutR, ulaR | 4 | 0.18; 0.17; 0.15; 0.25 | 50, 52, 66, 85 |
| ydcA | yagI, gadW, yeiI, yidZ | 4 | 0.30; 0.16; 0.17; 0.11 | 27, 72, 265, 473 |
| ydcC | cysB, cadC, dicA, yjjQ, ulaR, iclR, arsR | 7 | 0.36; 0.12; 0.23; 0.24; 0.13; 0.16; 0.12 | 26, 90, 91, 117, 288, 291, 389 |
| ydcF,ydcF-aldA | arsR | 1 | 0.22 | 138 |
| ydcH | yafN, sxy, iclR, nrdR, yncC | 5 | 0.16; 0.23; 0.23; 0.11; 0.12 | 110, 113, 150, 159, 354 |
| ydcI | envY, yddM, yagI, treR, yidZ, ttk, aaeR, iclR | 8 | 0.27; 0.13; 0.25; 0.18; 0.24; 0.23; 0.18; 0.12 | 16, 41, 51, 92, 145, 158, 288, 436 |
| ydcJ | betI, envY, yddM, yagI, yidZ, ttk, aaeR, iclR | 8 | 0.20; 0.27; 0.13; 0.25; 0.24; 0.23; 0.18; 0.12 | 3, 16, 42, 51, 144, 159, 288, 435 |
| ydcK | nsrR, iscR, argP, yjjQ, matA, nac, cysB | 7 | 0.21; 0.15; 0.35; 0.27; 0.11; 0.15; 0.10 | 15, 56, 61, 98, 128, 250, 359 |
| ydcL-insQ,ydcL | deoR, iscR, tyrR | 3 | 0.29; 0.14; 0.10 | 31, 81, 170 |
| ydcN,ydcN-ydcP | ydcN, dicA, melR, dicC, yafN, sfsB | 6 | 1.00; 0.26; 0.13; 0.22; 0.10; 0.10 | 1, 57, 163, 169, 243, 388 |
| ydcO | ydcN, dicA, dicC | 3 | 1.00; 0.26; 0.13 | 2, 56, 415 |
| ydcP | ybaQ, yncC, cysB | 3 | 0.41; 0.17; 0.12 | 48, 217, 288 |
| ydcQ-hicA | lldR, argR, ybaQ | 3 | 0.13; 0.15; 0.12 | 175, 231, 487 |
| ydcR | ydcR, nsrR, yncC, cysB, dicA | 5 | 1.00; 0.19; 0.21; 0.18; 0.16 | 1, 19, 146, 153, 193 |
| ydcS-ydcT-ydcU-ydcV-patD | dgsA, dicC, cpxR, nac, uxuR, sxy, argP, yeiI | 8 | 0.13; 0.27; 0.12; 0.19; 0.12; 0.15; 0.17; 0.12 | 87, 98, 114, 192, 212, 254, 255, 357 |
| ydcX | fimZ, ybhD, hcaR, yhaJ, argP, uxuR, ulaR, aaeR | 8 | 0.69; 0.13; 0.10; 0.10; 0.27; 0.11; 0.12; 0.12 | 8, 29, 49, 81, 116, 256, 313, 477 |
| ydcY | fimZ, ybhD, yhaJ, argP, ulaR, aaeR | 6 | 0.69; 0.13; 0.10; 0.27; 0.12; 0.12 | 9, 28, 82, 118, 314, 477 |
| ydcZ-mnaT | arsR, envY, relE | 3 | 0.62; 0.23; 0.14 | 7, 24, 89 |
| yddB-yddA,yddA | fimZ, cbl, aaeR, yeiE, argP, dicC | 6 | 0.36; 0.16; 0.30; 0.10; 0.11; 0.11 | 49, 127, 128, 192, 407, 501 |
| yddE | argP, glnG | 2 | 0.44; 0.15 | 32, 72 |
| yddG | ttk, ulaR, yjjQ | 3 | 0.28; 0.12; 0.11 | 104, 324, 335 |
| yddH | yjjQ | 1 | 0.15 | 230 |
| yddJ-yddK-yddL | dicC, argP, sfsB, cysB, ulaR, yjjQ, cynR, nac, aaeR | 9 | 0.55; 0.48; 0.31; 0.17; 0.17; 0.16; 0.11; 0.15; 0.10 | 9, 30, 91, 172, 194, 219, 260, 275, 545 |
| yddM | yddM, uxuR, ypdC, aaeR, iclR, yeiI, ulaR | 7 | 1.00; 0.53; 0.43; 0.58; 0.25; 0.20; 0.10 | 1, 7, 17, 24, 125, 201, 357 |
| yddM-adhP-maeA,adhP-maeA,maeA | kdgR, ompR, dgsA | 3 | 0.25; 0.10; 0.11 | 5, 24, 130 |
| yddY | agaR, ypdC, argP, ybaQ | 4 | 0.10; 0.17; 0.21; 0.12 | 13, 143, 185, 458 |
| ydeA | yfeC, ybaQ, iclR, cpxR, arsR, yjjQ | 6 | 0.21; 0.45; 0.30; 0.12; 0.17; 0.13 | 22, 32, 67, 111, 212, 275 |
| ydeI | yheO, cysB, yjjQ, cynR, argP | 5 | 0.13; 0.20; 0.16; 0.11; 0.14 | 78, 124, 221, 257, 333 |
| ydeJ | yheO, cysB, yjjQ, cynR, argP | 5 | 0.13; 0.20; 0.16; 0.11; 0.14 | 78, 123, 221, 258, 332 |
| ydeM | yddM, treR, yncC, argR, sxy | 5 | 0.14; 0.19; 0.26; 0.15; 0.12 | 31, 82, 116, 235, 331 |
| ydeM-ydeN,ydeN | nagC, cadC, deoR, yidZ, arsR, sfsB, yncC | 7 | 1.00; 0.11; 0.14; 0.17; 0.15; 0.14; 0.13 | 1, 111, 211, 270, 274, 285, 313 |
| ydeO | gcvA, iscR, dicA | 3 | 0.36; 0.12; 0.14 | 18, 102, 257 |
| ydeO-safA | gcvA, arsR, dicA | 3 | 0.36; 0.35; 0.12 | 19, 45, 291 |
| ydeP | rutR, dicC, nac, yncC, deoR, fimZ, aaeR, arsR, yeiI | 9 | 0.28; 0.30; 0.24; 0.19; 0.14; 0.14; 0.18; 0.14; 0.12 | 14, 70, 148, 184, 212, 232, 296, 304, 377 |
| ydeQ | yhjC, yjiR, yeiE, rutR, yncC | 5 | 1.00; 0.11; 0.21; 0.15; 0.20 | 1, 33, 58, 78, 174 |
| ydeR-ydeS-ydeT | arsR, yhfR, cpxR, sfsB, dicC, ttk, aaeR | 7 | 0.52; 0.12; 0.12; 0.17; 0.17; 0.16; 0.17 | 16, 32, 115, 206, 276, 279, 312 |
| ydfA-ydfB-ydfC | dicA, dicC, gadW, ybaQ | 4 | 0.95; 0.64; 0.22; 0.17 | 3, 5, 29, 315 |
| ydfG,ydfG-ydfH | cysB, sfsB, iclR | 3 | 0.24; 0.13; 0.13 | 75, 306, 413 |
| ydfH | ypdC, yafN, deoR, ybaQ | 4 | 0.33; 0.14; 0.15; 0.20 | 42, 141, 175, 246 |
| ydfI | cbl, treR | 2 | 0.13; 0.11 | 185, 197 |
| ydfJ | dicA, nrdR, ypdC, dicC, cysB, yncC, nac, arsR | 8 | 0.59; 0.18; 0.24; 0.28; 0.20; 0.15; 0.12; 0.12 | 7, 51, 70, 86, 114, 245, 338, 369 |
| ydfK-ynfT | dicC, nrdR, iscR, yjjQ, arsR, cbl, cysB, ulaR, dicA, cynR, fimZ, nac, iclR | 13 | 0.43; 0.18; 0.15; 0.32; 0.27; 0.20; 0.20; 0.17; 0.16; 0.11; 0.11; 0.12; 0.10 | 27, 50, 62, 69, 76, 76, 115, 187, 189, 259, 304, 339, 486 |
| ydfO-ynfO | agaR, aaeR, melR, dicC, ulaR, gcvA | 6 | 0.12; 0.76; 0.20; 0.26; 0.18; 0.11 | 9, 11, 64, 103, 170, 205 |
| ydfV | yhfZ, tyrR, gadW, yidZ, yjjQ | 5 | 0.10; 0.23; 0.23; 0.16; 0.10 | 7, 23, 25, 287, 362 |
| ydfZ | ycjW, yidZ | 2 | 0.13; 0.30 | 65, 99 |
| ydgA | uxuR, tyrR, ttk, aaeR | 4 | 0.23; 0.13; 0.19; 0.19 | 58, 107, 195, 282 |
| ydgC | arsR, pdhR, cpxR, yncC, dicC, argP | 6 | 0.39; 0.12; 0.14; 0.12; 0.14; 0.10 | 27, 72, 78, 337, 359, 432 |
| ydgD | ydfH, argP, gcvA, nrdR, yidZ, arsR | 6 | 0.13; 0.54; 0.18; 0.11; 0.22; 0.18 | 7, 20, 82, 145, 181, 209 |
| ydgH,ydgH-ydgI-folM | pdhR, cynR, glnG, gcvA, yjjQ, argP, yeiI, nac, dicA | 9 | 0.27; 0.33; 0.12; 0.16; 0.23; 0.22; 0.20; 0.15; 0.12 | 9, 28, 100, 101, 131, 173, 208, 269, 289 |
| ydgI,ydgI-folM | ulaR | 1 | 0.25 | 87 |
| ydgJ | aaeR | 1 | 0.19 | 283 |
| ydgK-rsxA-rsxB-rsxC-rsxD-rsxG-rsxE-nth,ydgK-rsxA-rsxB | ompR, yegW, iscR, nac, dicC | 5 | 0.15; 0.10; 0.15; 0.18; 0.12 | 12, 47, 61, 201, 439 |
| ydgU | ydfH, gcvA, nrdR, iclR | 4 | 0.13; 0.18; 0.11; 0.10 | 6, 82, 146, 501 |
| ydgV | yjjQ, iclR | 2 | 0.33; 0.21 | 64, 177 |
| ydhB | argR, rutR, ybaQ, ulaR, yidZ | 5 | 0.47; 0.14; 0.24; 0.14; 0.13 | 32, 95, 176, 253, 383 |
| ydhC | argR, nsrR, rutR, ybaQ, ulaR, yidZ, ttk | 7 | 0.47; 0.12; 0.14; 0.24; 0.14; 0.13; 0.10 | 33, 82, 87, 176, 254, 383, 486 |
| ydhI-ydhJ-ydhK,ydhI-ydhJ | modE, yncC, glnG, rutR, yeiE, nrdR, cynR | 7 | 0.11; 0.56; 0.19; 0.20; 0.22; 0.13; 0.10 | 15, 35, 38, 39, 52, 123, 310 |
| ydhL | dicC, yidZ, ybaQ | 3 | 0.16; 0.15; 0.12 | 291, 319, 455 |
| ydhM-nemA-gloA,ydhM,ydhM-nemA-gloA-rnt,ydhM-nemA | dicC, yidZ | 2 | 0.16; 0.11 | 291, 442 |
| ydhP | pepA, pdhR, cysB, yagI, ttk | 5 | 0.12; 0.10; 0.21; 0.13; 0.14 | 15, 92, 105, 167, 318 |
| ydhQ | fabR, mraZ, pdhR, yfeC, relE, aaeR, iclR | 7 | 0.20; 0.19; 0.16; 0.15; 0.15; 0.31; 0.20 | 6, 29, 29, 50, 74, 123, 206 |
| ydhR | fabR, yfeC, cpxR, iclR, arsR | 5 | 0.20; 0.15; 0.11; 0.20; 0.12 | 6, 49, 135, 208, 367 |
| ydhS | cpxR, yidZ, iclR | 3 | 0.11; 0.23; 0.12 | 136, 157, 424 |
| ydhT-ydhU-ydhX | yddM, arsR, ypdC, cysB | 4 | 0.22; 0.43; 0.26; 0.16 | 10, 25, 61, 188 |
| ydhT-ydhU-ydhX-ydhW-ydhV-ydhY,ydhW-ydhV-ydhY | modE, pdhR, arsR, cbl, lldR, sfsB, nrdR, yidZ | 8 | 0.13; 0.15; 0.24; 0.15; 0.14; 0.20; 0.10; 0.11 | 6, 37, 106, 142, 143, 159, 204, 456 |
| ydhZ | cysB, kdgR, ypdC, cynR, nac, fimZ | 6 | 0.49; 0.15; 0.40; 0.19; 0.15; 0.12 | 15, 16, 25, 111, 260, 281 |
| ydiA-aroH,ydiA | lldR, pdhR, yncC, hcaR, dgsA, sfsB | 6 | 0.52; 0.24; 0.57; 0.11; 0.14; 0.16 | 4, 11, 32, 47, 71, 236 |
| ydiE | racR, galS, cynR, ttk, nac | 5 | 0.11; 0.12; 0.22; 0.25; 0.11 | 45, 69, 73, 131, 380 |
| ydiF-ydiO | ydjF, yddM, cusR, dgsA, ypdC, fimZ, aaeR, yjjQ, cbl, argR, argP | 11 | 0.17; 0.13; 0.10; 0.13; 0.21; 0.16; 0.23; 0.17; 0.11; 0.11; 0.12 | 13, 44, 70, 82, 96, 185, 207, 208, 210, 352, 368 |
| ydiH-menI-ydiJ,menI-ydiJ | dgoR, exuR, ttk | 3 | 0.11; 0.33; 0.13 | 4, 6, 372 |
| ydiK | dgoR, exuR, ttk | 3 | 0.11; 0.33; 0.13 | 5, 6, 371 |
| ydiL | cpxR, yjjQ, deoR, aaeR | 4 | 0.12; 0.23; 0.17; 0.15 | 113, 133, 139, 384 |
| ydiM | deoR, nac, aaeR | 3 | 0.28; 0.22; 0.15 | 35, 164, 385 |
| ydiN-ydiB-aroD | allR, dicC, argR, yeiI | 4 | 0.22; 0.24; 0.12; 0.12 | 8, 113, 323, 389 |
| ydiP | sxy, cusR, mraZ, yeiI, yncC, ypdC | 6 | 0.42; 0.12; 0.13; 0.23; 0.20; 0.12 | 38, 41, 92, 164, 169, 286 |
| ydiQ-ydiR-ydiS-ydiT-fadK | sxy, cusR, mraZ, yeiI, yncC, ypdC | 6 | 0.42; 0.12; 0.13; 0.23; 0.20; 0.12 | 38, 41, 92, 163, 169, 286 |
| ydiU | galR, envY, gadW, cysB, yeiI | 5 | 0.11; 0.20; 0.14; 0.18; 0.10 | 16, 32, 91, 150, 450 |
| ydiV | nac, ycjW, iclR, argP | 4 | 0.50; 0.10; 0.24; 0.10 | 30, 100, 135, 428 |
| ydiY | cadC, cbl, nac, cynR, ybaQ, yidZ | 6 | 0.72; 0.39; 0.24; 0.13; 0.16; 0.13 | 4, 13, 157, 231, 345, 375 |
| ydiZ | dicC, sxy, yjjQ, cysB, yidZ | 5 | 0.27; 0.25; 0.15; 0.14; 0.13 | 97, 102, 237, 249, 395 |
| ydjE | ycjZ, ulaR, mraZ, envY, dicA, ypdC, dicC | 7 | 0.10; 0.27; 0.14; 0.11; 0.12; 0.10; 0.10 | 36, 70, 75, 116, 310, 336, 537 |
| ydjF | ydjF, srlR, glnG, argR, envY, ypdC, argP, iclR | 8 | 1.00; 0.18; 0.17; 0.37; 0.16; 0.20; 0.18; 0.12 | 1, 13, 51, 53, 61, 114, 233, 422 |
| ydjG-ydjH-ydjI-ydjJ-ydjK-ydjL | asnC, cadC, ulaR | 3 | 0.16; 0.15; 0.19 | 9, 59, 150 |
| ydjM | lexA, yjiR, nrdR, sfsB, ybaQ, yncC, yeiI | 7 | 0.14; 0.11; 0.15; 0.21; 0.23; 0.11; 0.11 | 15, 27, 81, 150, 184, 384, 427 |
| ydjN | treR, ompR, rutR, yafN, yeiI, uxuR, melR, yidZ, cbl, aaeR, argP, cysB | 12 | 0.37; 0.13; 0.22; 0.18; 0.29; 0.14; 0.10; 0.18; 0.10; 0.18; 0.14; 0.10 | 11, 13, 31, 84, 114, 158, 236, 246, 267, 297, 327, 360 |
| ydjO | gcvA, tyrR, nrdR, iclR, arsR, ttk, dicC | 7 | 0.46; 0.13; 0.11; 0.18; 0.11; 0.10; 0.10 | 9, 98, 184, 255, 406, 489, 533 |
| ydjX-ydjY-ydjZ-ynjA-ynjB-ynjC-ynjD,ydjX-ydjY-ydjZ-ynjA | yeiE, exuR, ttk, mraZ, nrdR, yncC | 6 | 0.27; 0.14; 0.26; 0.10; 0.10; 0.10 | 32, 41, 121, 129, 194, 412 |
| yeaC | uxuR, sfsB, rutR, nac, fimZ, ypdC, ybaQ | 7 | 0.19; 0.25; 0.11; 0.23; 0.13; 0.13; 0.18 | 90, 112, 140, 162, 243, 244, 281 |
| yeaC-msrB,msrB | fimZ, treR, deoR, yncC, dicC | 5 | 0.25; 0.15; 0.15; 0.13; 0.11 | 113, 119, 198, 315, 511 |
| yeaD | relE, exuR, lldR, yagI, yjjQ | 5 | 0.28; 0.14; 0.24; 0.14; 0.14 | 28, 44, 46, 149, 256 |
| yeaE | glnG, melR, ybaQ | 3 | 0.38; 0.20; 0.22 | 10, 73, 198 |
| yeaG-yeaH | ybiH, rutR, yncC, arsR, ulaR, cynR, aaeR, sfsB | 8 | 0.14; 0.16; 0.20; 0.20; 0.16; 0.11; 0.17; 0.12 | 20, 55, 159, 166, 215, 279, 321, 341 |
| yeaI | melR, envY, hcaR, gcvA, galS, srlR, yfeC, cpxR, yncC, yjjQ, aaeR | 11 | 0.33; 0.23; 0.15; 0.32; 0.14; 0.11; 0.10; 0.10; 0.19; 0.13; 0.10 | 19, 22, 23, 24, 39, 42, 109, 142, 181, 291, 547 |
| yeaJ | gcvA | 1 | 0.27 | 43 |
| yeaK-yeaL,yeaK | cadC, argR, matA, arsR, aaeR, dicC | 6 | 0.16; 0.25; 0.10; 0.20; 0.21; 0.14 | 51, 98, 137, 167, 247, 363 |
| yeaL | ybcM, aaeR, dicC, ybaQ | 4 | 0.13; 0.39; 0.24; 0.11 | 13, 67, 133, 510 |
| yeaM | yeaM | 1 | 1.00 | 2 |
| yeaN | yeaM, kdgR, nac | 3 | 1.00; 0.11; 0.13 | 1, 35, 328 |
| yeaO | uxuR, cysB | 2 | 0.79; 0.32 | 3, 35 |
| yeaP-yoaJ-yoaK,yeaP | cadC, exuR, gadW, rutR | 4 | 0.27; 0.24; 0.21; 0.20 | 14, 15, 33, 40 |
| yeaQ | yeiI, yidZ | 2 | 0.84; 0.72 | 7, 10 |
| yeaT | yeaT, uxuR, yidZ | 3 | 1.00; 0.12; 0.13 | 2, 226, 378 |
| yeaV-yeaW | yeaT, yjiR, aaeR, sfsB | 4 | 0.76; 0.11; 0.24; 0.14 | 3, 28, 184, 293 |
| yeaX | rutR, yfeC, dicC, ybaQ | 4 | 0.17; 0.10; 0.16; 0.13 | 48, 108, 287, 427 |
| yeaY | ycjW, allR, yafN, sxy | 4 | 0.33; 0.11; 0.13; 0.11 | 6, 78, 155, 334 |
| yeaY-tsaB-yoaA,yoaA | cpxR, ulaR, ybaQ | 3 | 0.27; 0.22; 0.12 | 13, 120, 451 |
| yebB | yfeC, ulaR, sxy, yjjQ, aaeR, arsR | 6 | 0.26; 0.35; 0.26; 0.15; 0.17; 0.14 | 11, 50, 91, 226, 315, 325 |
| yebE | nrdR, argP, argR | 3 | 0.11; 0.21; 0.16 | 158, 192, 208 |
| yebF | lexA, gadW, ttk | 3 | 0.12; 0.11; 0.12 | 19, 132, 409 |
| yebF-yebG,yebG | lexA, ycjZ, ycjW, dicC, aaeR, ulaR | 6 | 0.12; 0.11; 0.12; 0.21; 0.18; 0.11 | 17, 23, 68, 197, 298, 342 |
| yebK-pykA,yebK | yciT, ybaQ, matA, yidZ, ulaR, dicA, gcvA, deoR, yeiI, iclR | 10 | 0.21; 0.30; 0.11; 0.26; 0.20; 0.16; 0.10; 0.13; 0.16; 0.15 | 7, 93, 118, 127, 138, 187, 223, 255, 274, 320 |
| yebO,cspC-yobF-yebO | lldR, cbl, fimZ, sfsB, cysB | 5 | 0.28; 0.23; 0.36; 0.31; 0.13 | 26, 44, 50, 93, 262 |
| yebO-mgrB,mgrB | mraZ, lldR, ydjF, cbl, fimZ, sfsB, glnG, yeiE, cysB | 9 | 0.28; 0.28; 0.11; 0.23; 0.35; 0.31; 0.11; 0.11; 0.13 | 7, 28, 41, 44, 55, 93, 109, 172, 264 |
| yebQ | kdgR, ydjF, ttk, allR, cadC, aaeR, yeiI | 7 | 0.18; 0.26; 0.43; 0.12; 0.12; 0.30; 0.11 | 7, 7, 38, 57, 101, 134, 399 |
| yebS-yebT | cynR, deoR, yafN, glnG, dicA, ybaQ | 6 | 0.25; 0.20; 0.17; 0.11; 0.19; 0.17 | 55, 95, 98, 119, 126, 313 |
| yebV | iscR, rutR, glnG, exuR, aaeR, melR, deoR, yidZ, yeiI, yjjQ | 10 | 0.26; 0.19; 0.15; 0.11; 0.34; 0.17; 0.19; 0.21; 0.13; 0.10 | 19, 44, 66, 72, 103, 108, 111, 186, 340, 361 |
| yebW | ybaQ, iscR, glnG, exuR, aaeR, deoR, yeiI | 7 | 0.89; 0.26; 0.15; 0.11; 0.34; 0.19; 0.13 | 7, 20, 67, 72, 102, 110, 331 |
| yebY-yebZ-yobA | nac, argP, ulaR, gcvA, cysB, yeiI | 6 | 0.37; 0.25; 0.19; 0.12; 0.16; 0.18 | 61, 142, 152, 171, 178, 252 |
| yecA | ulaR, relE, yeiI, argR | 4 | 0.67; 0.37; 0.29; 0.11 | 7, 20, 115, 329 |
| yecA-leuZ-cysT-glyW,leuZ-cysT-glyW-3pETS-leuZ,leuZ-cysT-glyW | relE, ybiH, yeiI | 3 | 0.37; 0.14; 0.29 | 19, 25, 116 |
| yecC3p | uxuR, ycjZ, rutR, dicA | 4 | 0.42; 0.13; 0.25; 0.20 | 11, 15, 17, 120 |
| yecD-yecE-yecN-cmoA-cmoB,yecD-yecE | cbl, yegW, yjjQ, nac | 4 | 0.42; 0.12; 0.33; 0.17 | 8, 22, 63, 216 |
| yecF | yjjQ, ulaR, nac, matA, argP, aaeR | 6 | 0.63; 0.37; 0.40; 0.14; 0.21; 0.21 | 11, 38, 44, 69, 191, 231 |
| yecH | tyrR, nac, cysB | 3 | 0.23; 0.13; 0.11 | 24, 325, 326 |
| yecJ | fimZ, deoR | 2 | 0.28; 0.16 | 88, 165 |
| yecJ-azuC,azuC | fimZ, iscR, deoR, uxuR | 4 | 0.28; 0.11; 0.16; 0.14 | 86, 120, 163, 168 |
| yecN-cmoA-cmoB | arsR, envY, yncC, yeiE, allR, ybaQ, cbl, iclR | 8 | 0.49; 0.20; 0.46; 0.16; 0.10; 0.25; 0.12; 0.16 | 19, 31, 50, 96, 100, 150, 201, 295 |
| yecR | fimZ, iscR, deoR | 3 | 0.28; 0.11; 0.16 | 86, 120, 164 |
| yecT | iscR, cadC, nrdR, iclR | 4 | 0.18; 0.15; 0.10; 0.18 | 42, 62, 192, 246 |
| yecU | nrdR, ulaR, nac, cysB, argP, aaeR | 6 | 0.21; 0.37; 0.40; 0.19; 0.21; 0.21 | 33, 39, 42, 134, 189, 231 |
| yecV | glpR, cadC, nrdR, iclR | 4 | 0.17; 0.15; 0.10; 0.18 | 5, 63, 193, 247 |
| yedA | agaR, yeiI, iclR | 3 | 0.13; 0.21; 0.13 | 7, 192, 411 |
| yedD | yeaT, argP, aaeR, uxuR | 4 | 0.10; 0.30; 0.32; 0.14 | 12, 92, 114, 154 |
| yedE-yedF,yedE-yedF-yedK-yedL | yeaT, argP, aaeR, uxuR | 4 | 0.10; 0.30; 0.31; 0.14 | 12, 92, 118, 155 |
| yedJ-yedR | deoR, cynR, yheO, nsrR, nrdR, sfsB, yncC, melR, cbl, sxy, nac, argP, iclR | 13 | 0.37; 0.39; 0.16; 0.11; 0.15; 0.24; 0.24; 0.13; 0.11; 0.15; 0.13; 0.12; 0.12 | 13, 16, 38, 85, 94, 123, 125, 166, 237, 240, 311, 398, 427 |
| yedK | yjiR, matA, lldR, treR, sxy | 5 | 0.17; 0.22; 0.29; 0.24; 0.23 | 6, 22, 23, 41, 116 |
| yedL | argP, nac | 2 | 0.32; 0.28 | 78, 111 |
| yedN | galR, ybiH, nac, deoR, matA, gadW, melR, yeiE | 8 | 0.13; 0.15; 0.43; 0.26; 0.14; 0.12; 0.16; 0.12 | 11, 11, 37, 43, 63, 119, 127, 147 |
| yedP | dgsA, ulaR, treR, ycjW, argP, dicC, fimZ, sxy | 8 | 0.24; 0.26; 0.19; 0.11; 0.26; 0.21; 0.16; 0.12 | 16, 78, 79, 80, 129, 192, 199, 314 |
| yedQ | glpR, yhaJ, aaeR, fimZ, yeiI | 5 | 0.12; 0.21; 0.34; 0.14; 0.15 | 15, 21, 97, 226, 308 |
| yedQ-yodC-yedI,yedI | agaR, yafN, yeiI, iclR | 4 | 0.13; 0.12; 0.21; 0.13 | 7, 183, 191, 411 |
| yedS | cynR, yheO, nsrR, sfsB, yncC, cysB, nac, argP, iclR | 9 | 0.39; 0.16; 0.11; 0.24; 0.24; 0.16; 0.13; 0.12; 0.12 | 18, 38, 85, 124, 126, 189, 312, 397, 426 |
| yedV-yedW,yedW | cusR, dgsA, argR, yafN, arsR, ttk, dicC, ybaQ, aaeR | 9 | 0.56; 0.11; 0.20; 0.12; 0.13; 0.13; 0.13; 0.14; 0.13 | 2, 132, 139, 170, 337, 388, 391, 404, 451 |
| yedY-yedZ | dgsA, ttk, yafN, nac, iclR, dicC, ybaQ, aaeR | 8 | 0.11; 0.22; 0.12; 0.15; 0.14; 0.13; 0.14; 0.13 | 133, 161, 171, 249, 369, 390, 406, 450 |
| yeeD-yeeE | deoR, yidZ, dgsA, cysB | 4 | 0.27; 0.33; 0.12; 0.10 | 38, 86, 102, 353 |
| yeeJ | deoR, iclR, yeiI, ttk | 4 | 0.23; 0.29; 0.30; 0.13 | 63, 70, 109, 380 |
| yeeL | argP, arsR, dicC, yeiI, cysB, cbl, fimZ, nac | 8 | 0.25; 0.21; 0.20; 0.19; 0.14; 0.11; 0.13; 0.14 | 133, 149, 212, 225, 230, 233, 245, 280 |
| yeeN | zur, tyrR, yhfR, yeiE, argP, cynR, yjjQ | 7 | 0.22; 0.27; 0.10; 0.19; 0.23; 0.14; 0.15 | 9, 16, 50, 76, 162, 198, 241 |
| yeeO | argP, iclR | 2 | 0.12; 0.14 | 358, 363 |
| yeeP | argR, yidZ | 2 | 0.58; 0.12 | 25, 403 |
| yeeR-yeeS-yeeT-cbeA-cbtA-yeeW | cysB, ybaQ, yeiI, yidZ | 4 | 0.39; 0.28; 0.23; 0.11 | 20, 107, 166, 459 |
| yeeX | dicC, melR, yafN, cysB, deoR, yncC | 6 | 0.44; 0.21; 0.19; 0.21; 0.10; 0.11 | 24, 63, 73, 110, 366, 388 |
| yeeX-yeeA,yeeA | srlR, mraZ, galS, yafN, yidZ | 5 | 0.17; 0.15; 0.11; 0.11; 0.18 | 14, 63, 83, 220, 257 |
| yeeY | yncC, glnG, yfeC, treR, deoR, argR, yeiI | 7 | 0.47; 0.15; 0.10; 0.11; 0.14; 0.15; 0.18 | 48, 68, 115, 192, 208, 238, 248 |
| yeeY-yeeZ,yeeZ | purR, sxy | 2 | 0.14; 0.13 | 9, 285 |
| yeeY-yeeZ-yefM-yoeB,yeeZ-yefM-yoeB,yefM-yoeB | yoeB, ybiH, relE, argR, deoR, aaeR, yeiE, ulaR, iclR | 9 | 1.00; 0.14; 0.18; 0.30; 0.21; 0.28; 0.10; 0.13; 0.16 | 1, 24, 59, 72, 91, 148, 181, 264, 281 |
| yegD | yeiI, yncC, uxuR | 3 | 0.35; 0.17; 0.11 | 82, 214, 275 |
| yegE | iclR, cbl | 2 | 0.26; 0.15 | 116, 140 |
| yegH | nagC, yhfR, yddM, cynR, fimZ, cysB, deoR, nac, yjjQ, dicC | 10 | 0.46; 0.11; 0.12; 0.21; 0.24; 0.19; 0.18; 0.20; 0.17; 0.12 | 7, 45, 59, 98, 120, 133, 135, 184, 209, 438 |
| yegI | nsrR, mraZ, yjjQ, iclR, dicC | 5 | 0.12; 0.10; 0.11; 0.12; 0.12 | 69, 139, 324, 429, 434 |
| yegJ | yncC, ybaQ, mraZ, yidZ, yjjQ, iclR, dicC | 7 | 0.57; 0.27; 0.10; 0.24; 0.11; 0.12; 0.12 | 31, 113, 138, 140, 324, 430, 435 |
| yegK-yegL | dicC, ttk | 2 | 0.26; 0.21 | 102, 178 |
| yegP | yjiR, galS, ttk, yjjQ | 4 | 0.13; 0.12; 0.29; 0.13 | 17, 65, 94, 278 |
| yegQ,yegQ-cyaR | nac, galS, yagI, ttk, sfsB, yjjQ, yidZ, ybaQ | 8 | 0.39; 0.12; 0.19; 0.29; 0.14; 0.13; 0.13; 0.13 | 47, 64, 85, 93, 279, 279, 385, 425 |
| yegS | nrdR, mraZ, argP, nac, yncC | 5 | 0.27; 0.15; 0.15; 0.13; 0.10 | 13, 61, 309, 319, 399 |
| yegT-yegU-yegV | yegW, uxuR, allR, sfsB | 4 | 1.00; 0.50; 0.13; 0.12 | 1, 8, 41, 325 |
| yegW | yidZ, cynR, sxy, fimZ, argR, aaeR | 6 | 0.43; 0.31; 0.16; 0.14; 0.11; 0.15 | 31, 34, 222, 223, 334, 381 |
| yegW-yegX-thiD-thiM,thiD-thiM | ypdC, fimZ, ybaQ, yeiI | 4 | 0.21; 0.15; 0.20; 0.15 | 107, 205, 241, 310 |
| yegX | aaeR, treR, uxuR, ybaQ | 4 | 0.50; 0.14; 0.10; 0.14 | 30, 140, 277, 408 |
| yegZ-yegR | nrdR, mraZ, argP, nac, yncC | 5 | 0.27; 0.15; 0.15; 0.13; 0.10 | 14, 62, 308, 320, 398 |
| yehA-yehB-yehC-yehD | argP, yegW, uxuR, iclR | 4 | 0.82; 0.16; 0.19; 0.18 | 6, 6, 91, 244 |
| yehE | uxuR, envY, sxy, dicA, argR | 5 | 0.29; 0.13; 0.24; 0.17; 0.13 | 32, 93, 104, 161, 296 |
| yehE-mrp,mrp | yciT, gcvA, ycjW, galS, treR, ttk, dicC | 7 | 0.12; 0.27; 0.16; 0.12; 0.17; 0.20; 0.18 | 36, 40, 43, 72, 102, 192, 259 |
| yehF | hcaR, yidZ, melR, gcvA, relE, fimZ, arsR, aaeR, nac | 9 | 0.15; 0.42; 0.26; 0.19; 0.11; 0.15; 0.16; 0.14; 0.10 | 18, 34, 36, 74, 112, 208, 239, 389, 412 |
| yehI | cbl, ypdC, ybaQ | 3 | 0.28; 0.17; 0.16 | 27, 146, 346 |
| yehK | ttk, yidZ | 2 | 0.39; 0.15 | 53, 325 |
| yehL-yehM-yehP-yehQ | tyrR, sfsB, cysB | 3 | 0.12; 0.13; 0.10 | 112, 312, 352 |
| yehR | ycjW, yafN, ypdC, nrdR, aaeR, arsR, cynR | 7 | 0.25; 0.20; 0.19; 0.12; 0.24; 0.16; 0.11 | 12, 62, 117, 144, 188, 242, 262 |
| yehS | cpxR, uxuR | 2 | 0.19; 0.16 | 33, 131 |
| yehS-yehT-yehU,yehT-yehU | glnG | 1 | 0.54 | 5 |
| yehW-yehX-yehY-osmF,yehX-yehY-osmF | argP, ttk | 2 | 0.20; 0.15 | 195, 297 |
| yeiB-folE,folE | uxuR, cysB, arsR, sxy | 4 | 0.28; 0.26; 0.25; 0.13 | 37, 70, 100, 278 |
| yeiG | cysB, arsR, sxy | 3 | 0.26; 0.25; 0.13 | 70, 101, 278 |
| yeiH | yeiE, betI, yeiI, allR, ttk, cysB, argR, sfsB, argP | 9 | 0.75; 0.10; 0.49; 0.11; 0.22; 0.15; 0.11; 0.11; 0.12 | 3, 36, 38, 80, 167, 219, 346, 375, 384 |
| yeiI | yeiE, ybaQ, arsR, melR | 4 | 0.40; 0.32; 0.23; 0.10 | 12, 81, 133, 225 |
| yeiL | arsR, envY, ypdC, aaeR, dicA, yidZ | 6 | 0.39; 0.19; 0.19; 0.25; 0.12; 0.14 | 31, 40, 129, 174, 286, 348 |
| yeiP,yeiP-yeiQ | kdgR, nac, ybaQ, ttk | 4 | 0.13; 0.39; 0.23; 0.11 | 25, 49, 178, 457 |
| yeiQ | exuR, iclR, sfsB, argR, dicA, yjjQ, aaeR, nac, dicC, yeiI | 10 | 0.30; 0.29; 0.28; 0.16; 0.15; 0.15; 0.20; 0.14; 0.15; 0.12 | 9, 69, 104, 215, 222, 247, 258, 293, 305, 354 |
| yeiR-lpxT | relE, ttk, cbl, dicA, yeiI, aaeR | 6 | 0.17; 0.25; 0.13; 0.16; 0.17; 0.13 | 62, 130, 172, 184, 271, 430 |
| yeiW | kdgR, nac, argR, ybaQ, yeiI, ttk | 6 | 0.13; 0.39; 0.18; 0.23; 0.12; 0.11 | 25, 48, 168, 179, 353, 456 |
| yejA-yejB-yejE-yejF | pspF, glnG, yeiI, ttk | 4 | 0.13; 0.14; 0.24; 0.18 | 16, 78, 147, 218 |
| yejG | ydfH, yncC, gcvA, dicC, nac | 5 | 0.10; 0.69; 0.12; 0.15; 0.12 | 10, 20, 177, 304, 350 |
| yejG5p | uxuR, yeiI, sxy, aaeR | 4 | 0.27; 0.28; 0.13; 0.16 | 38, 118, 291, 342 |
| yejH | metR, yagI, ttk, yidZ | 4 | 0.16; 0.11; 0.14; 0.10 | 3, 208, 338, 499 |
| yejK | sfsB, lldR, uxuR, ybaQ | 4 | 0.25; 0.13; 0.11; 0.13 | 110, 190, 241, 429 |
| yejL,yejL-yejM,yejL-yejM-proL | uxuR, yidZ | 2 | 0.11; 0.14 | 242, 332 |
| yejO | treR, ycjW, yagI, iscR, argR | 5 | 0.27; 0.11; 0.19; 0.11; 0.17 | 29, 83, 88, 124, 199 |
| yfaD-ypaA | sxy, yhfR, hcaR, yafN, lldR, ttk | 6 | 0.39; 0.10; 0.10; 0.13; 0.13; 0.10 | 46, 47, 52, 160, 172, 492 |
| yfaE | lldR | 1 | 0.21 | 59 |
| yfaH | yciT, yjjQ, ybaQ | 3 | 0.11; 0.25; 0.13 | 41, 108, 423 |
| yfaL | cynR, nac, matA, cbl, yncC, aaeR | 6 | 0.50; 0.38; 0.12; 0.17; 0.21; 0.23 | 6, 54, 102, 103, 153, 208 |
| yfaP-yfaQ-yfaT-yfaA-yfaS | iclR, relE | 2 | 0.43; 0.24 | 25, 35 |
| yfaY | allR | 1 | 0.15 | 28 |
| yfaZ | cusR, argP, nac, deoR, yidZ | 5 | 0.11; 0.25; 0.19; 0.10; 0.14 | 57, 131, 188, 335, 351 |
| yfbK | ttk, nrdR, glnG, aaeR, ybaQ | 5 | 0.46; 0.13; 0.10; 0.22; 0.11 | 27, 103, 145, 214, 535 |
| yfbL | ttk, nrdR, glnG, aaeR | 4 | 0.46; 0.13; 0.10; 0.22 | 26, 103, 146, 213 |
| yfbM | envY, dgsA, fimZ, aaeR, cynR, sxy, cysB, argP | 8 | 0.12; 0.11; 0.22; 0.24; 0.13; 0.13; 0.12; 0.12 | 113, 119, 131, 187, 217, 289, 296, 369 |
| yfbN | ulaR, dicC, aaeR | 3 | 0.23; 0.13; 0.12 | 107, 407, 482 |
| yfbO | nagC, ulaR, aaeR | 3 | 0.12; 0.23; 0.12 | 49, 108, 482 |
| yfbP | tyrR, nrdR, dgsA, treR, ulaR, dicC, aaeR | 7 | 0.22; 0.18; 0.13; 0.17; 0.21; 0.13; 0.12 | 27, 56, 83, 100, 134, 408, 482 |
| yfbR | melR, yagI, uxuR | 3 | 0.24; 0.23; 0.12 | 46, 57, 209 |
| yfbS-yfbT-yfbU,yfbT-yfbU | racR, cbl, sfsB, yidZ | 4 | 0.12; 0.17; 0.14; 0.11 | 42, 110, 292, 447 |
| yfbU-yfbV,yfbV | yheO, arsR, cadC, cbl, fimZ, sfsB | 6 | 1.00; 0.34; 0.16; 0.17; 0.14; 0.14 | 1, 50, 55, 112, 229, 290 |
| yfcC | argR, argP, relE, cynR, ybaQ, yidZ | 6 | 0.48; 0.38; 0.14; 0.21; 0.18; 0.11 | 28, 42, 76, 93, 299, 467 |
| yfcD | pdhR, yagI | 2 | 0.18; 0.24 | 26, 54 |
| yfcD-yfcE,yfcE | dicC, ybaQ | 2 | 0.19; 0.16 | 227, 334 |
| yfcF | melR, yafN, yeiI | 3 | 0.25; 0.12; 0.13 | 39, 188, 329 |
| yfcI | sxy, yddM, allR, relE, iclR | 5 | 0.56; 0.15; 0.13; 0.10; 0.22 | 18, 29, 48, 135, 163 |
| yfcJ | dicA, ybaQ | 2 | 0.10; 0.13 | 348, 446 |
| yfcJ-fabB,fabB | fabR, sfsB, ybcM, yafN, melR, argR | 6 | 1.00; 0.71; 0.13; 0.27; 0.13; 0.14 | 2, 8, 8, 33, 171, 251 |
| yfcL-epmC-yfcA-mepA-aroC,epmC-yfcA-mepA-aroC | cusR, yddM, iclR, yeiI | 4 | 0.13; 0.12; 0.17; 0.10 | 31, 61, 276, 449 |
| yfcL-epmC-yfcA-mepA-aroC-prmB,epmC-yfcA-mepA-aroC-prmB | melR, treR, yidZ | 3 | 0.22; 0.12; 0.12 | 55, 157, 435 |
| yfcO-yfcP-yfcQ-yfcR-yfcS-yfcU | gadW, ypdC | 2 | 0.10; 0.15 | 163, 191 |
| yfcV | ydjF, nrdR, srlR, nac, cynR, argP, dgsA, yjjQ, yeiE | 9 | 0.18; 0.24; 0.10; 0.36; 0.20; 0.28; 0.12; 0.22; 0.12 | 11, 25, 48, 67, 102, 103, 109, 143, 149 |
| yfcZ | nagC, nsrR, exuR, arsR, argR | 5 | 0.14; 0.12; 0.11; 0.23; 0.14 | 35, 70, 83, 125, 265 |
| yfdC | marA, uxuR | 2 | 0.16; 0.18 | 14, 96 |
| yfdE | ybiH, argR, ypdC, nac, yjjQ, argP, cynR | 7 | 0.10; 0.30; 0.24; 0.27; 0.22; 0.19; 0.10 | 46, 71, 71, 125, 144, 224, 311 |
| yfdE-yfdV-oxc-frc-yfdX | marA, yagI, allR | 3 | 0.16; 0.20; 0.10 | 12, 76, 98 |
| yfdF | lldR, yegW, kdgR, sfsB, yjjQ | 5 | 0.46; 0.13; 0.12; 0.48; 0.20 | 7, 10, 28, 28, 170 |
| yfdK-yfdL-yfdM-yfdN-oweS | ttk, yciT, yagI, gadW, ypdC, matA, ybaQ, iclR, yjjQ | 9 | 0.55; 0.14; 0.22; 0.13; 0.18; 0.10; 0.18; 0.15; 0.11 | 12, 16, 60, 99, 136, 143, 302, 317, 347 |
| yfdP-yfdQ | yciT, yagI, gadW, ttk, ypdC, ybaQ, iclR | 7 | 0.14; 0.22; 0.13; 0.26; 0.18; 0.18; 0.15 | 17, 60, 99, 123, 135, 302, 317 |
| yfdR-yfdS-yfdT | yafN, nac, iclR, ybaQ | 4 | 0.22; 0.14; 0.11; 0.10 | 50, 285, 474, 555 |
| yfdV | dicC, yeiI, iclR, yeiE, fimZ, ybaQ, aaeR | 7 | 0.24; 0.26; 0.22; 0.11; 0.17; 0.19; 0.16 | 122, 136, 158, 160, 181, 258, 339 |
| yfdY | yjiR, yjjQ, ypdC, dicA, ttk | 5 | 0.13; 0.32; 0.15; 0.14; 0.16 | 15, 71, 176, 226, 263 |
| yfeA | dgsA, ttk, iscR, iclR, dicC, yncC, sfsB | 7 | 0.15; 0.31; 0.12; 0.25; 0.23; 0.17; 0.15 | 53, 86, 109, 124, 142, 219, 254 |
| yfeC-yfeD | sfsB, rutR, yncC, ttk, sxy, dicC, yeiI, argP, ybaQ | 9 | 1.00; 0.30; 0.44; 0.31; 0.22; 0.23; 0.18; 0.10; 0.11 | 2, 10, 55, 84, 133, 140, 239, 435, 514 |
| yfeH | ybhD, yeiI, ttk, iclR | 4 | 0.16; 0.48; 0.22; 0.15 | 21, 42, 166, 342 |
| yfeK-yfeS | ybaQ, ttk, iclR | 3 | 0.26; 0.13; 0.11 | 143, 367, 462 |
| yfeN | ybiH, ypdC, cysB, cpxR, sfsB, argR, uxuR, dicC, aaeR | 9 | 0.14; 0.38; 0.26; 0.12; 0.23; 0.20; 0.12; 0.17; 0.16 | 27, 29, 65, 116, 132, 134, 216, 278, 337 |
| yfeO | iclR, cysB, yagI, melR, sxy | 5 | 0.31; 0.21; 0.13; 0.12; 0.10 | 60, 108, 164, 190, 365 |
| yfeR | ybhD, yeiI, yeiE, iclR | 4 | 0.16; 0.48; 0.16; 0.15 | 20, 42, 100, 341 |
| yfeT | yfeT, aaeR, yncC | 3 | 1.00; 0.36; 0.18 | 2, 86, 196 |
| yfeX | lldR, ypdC, deoR, treR, arsR | 5 | 0.18; 0.20; 0.18; 0.10; 0.11 | 80, 113, 120, 209, 428 |
| yfeX-yfeY | mraZ, cysB | 2 | 0.12; 0.12 | 102, 309 |
| yfeY-yfeZ-ypeA,yfeZ-ypeA,yfeX-yfeY-yfeZ-ypeA | ycjW, treR, ulaR, yidZ | 4 | 0.22; 0.22; 0.15; 0.11 | 15, 57, 227, 448 |
| yffB-dapE-ypfN | ydjF, aaeR, cynR, iclR | 4 | 0.13; 0.20; 0.10; 0.10 | 28, 267, 301, 495 |
| yffL | trpR, cysB, aaeR, fimZ, dicA, ypdC, nac | 7 | 0.11; 0.24; 0.37; 0.15; 0.15; 0.13; 0.12 | 30, 77, 80, 204, 225, 228, 337 |
| yffM-yffN | yeaM, rutR, cysB, treR, sxy, yidZ, fimZ | 7 | 0.12; 0.15; 0.15; 0.10; 0.16; 0.19; 0.11 | 7, 80, 208, 220, 227, 238, 321 |
| yffO-yffP | uxuR | 1 | 0.15 | 140 |
| yffQ-yffR | yidZ, aaeR, ybaQ | 3 | 0.33; 0.26; 0.12 | 87, 167, 482 |
| yffS | yagI, yafN, lldR | 3 | 0.12; 0.11; 0.11 | 183, 235, 244 |
| yfgA-rlmN,rlmN | yagI, pdhR, fimZ | 3 | 0.31; 0.11; 0.25 | 26, 81, 115 |
| yfgD | cysB, uxuR, glnG | 3 | 1.00; 0.27; 0.12 | 1, 40, 93 |
| yfgF | ypdC, arsR, nac, yeiI | 4 | 0.19; 0.16; 0.12; 0.12 | 131, 245, 364, 381 |
| yfgG | ypdC, arsR, nac | 3 | 0.19; 0.16; 0.12 | 130, 245, 364 |
| yfgH-yfgI | yeiI, cpxR, nrdR, iclR, gcvA, deoR, yncC, nac | 8 | 0.71; 0.20; 0.19; 0.33; 0.10; 0.10; 0.12; 0.10 | 19, 28, 39, 50, 222, 337, 353, 409 |
| yfgJ | arsR, cbl, iclR, ttk, cysB | 5 | 0.34; 0.16; 0.19; 0.16; 0.10 | 54, 124, 224, 267, 355 |
| yfgJ-der | yagI, galR, cusR, sfsB, yncC | 5 | 0.39; 0.10; 0.12; 0.19; 0.11 | 13, 20, 37, 180, 389 |
| yfgM-hisS-ispG,ispG-sroE | dicA, ypdC, iclR | 3 | 0.20; 0.14; 0.10 | 115, 200, 490 |
| yfgO | gcvA, argR, uxuR, iclR, yncC | 5 | 0.20; 0.21; 0.15; 0.22; 0.12 | 66, 117, 142, 161, 338 |
| yfhG | nagC, glnG, ycjW, uxuR, dicA, argP, arsR, ybaQ | 8 | 0.16; 0.14; 0.11; 0.16; 0.10; 0.12; 0.12; 0.12 | 27, 76, 78, 125, 357, 362, 370, 476 |
| yfhG-glrK-glmY,glmY | basR, exuR, gcvA, dicC, sfsB, nac, yidZ | 7 | 0.11; 0.11; 0.16; 0.23; 0.12; 0.10; 0.11 | 53, 81, 106, 150, 317, 400, 458 |
| yfhH | yfhH, nagC, yncC | 3 | 1.00; 0.13; 0.13 | 1, 42, 317 |
| yfhL | yjjQ, lldR, cysB | 3 | 0.28; 0.10; 0.12 | 88, 277, 297 |
| yfhR | iclR, sfsB | 2 | 0.15; 0.11 | 322, 379 |
| yfiE | pepA, yagI, cadC, yncC, ypdC, ttk, aaeR | 7 | 0.19; 0.32; 0.18; 0.37; 0.15; 0.16; 0.14 | 2, 23, 32, 73, 180, 272, 408 |
| yfiF | yheO, treR, ybaQ, ttk, dicA | 5 | 0.20; 0.19; 0.23; 0.15; 0.12 | 21, 76, 194, 294, 314 |
| yfiH-rluD-ryfD,yfiH-rluD | yhfR, pdhR | 2 | 0.13; 0.19 | 19, 22 |
| yfiL | tyrR, hdfR, cysB, iclR, yeiI, sfsB, yncC | 7 | 1.00; 0.14; 0.22; 0.18; 0.13; 0.11; 0.10 | 2, 10, 95, 260, 332, 366, 409 |
| yfiM | pepA, cbl, yeiI | 3 | 0.11; 0.13; 0.17 | 24, 183, 270 |
| yfiP,yfiP-pka | yheO, yagI, ydjF, ybaQ, yeiI, ttk | 6 | 0.20; 0.29; 0.11; 0.23; 0.18; 0.15 | 20, 35, 52, 193, 247, 293 |
| yfiR-yfiN-yfiB,yfiR-yfiN | cysB, yjjQ, fimZ, arsR, aaeR | 5 | 0.22; 0.20; 0.17; 0.15; 0.10 | 93, 173, 179, 262, 532 |
| yfiS | gcvA, sxy, argP | 3 | 0.39; 0.18; 0.15 | 17, 191, 301 |
| yfjD | modE, yeiI, yafN, arsR | 4 | 0.13; 0.59; 0.18; 0.13 | 5, 23, 76, 363 |
| yfjH | betI, lldR, arsR, yeiE, aaeR, cynR, nrdR, argP, fimZ, yjjQ | 10 | 0.11; 0.19; 0.30; 0.19; 0.37; 0.21; 0.13; 0.18; 0.13; 0.10 | 29, 68, 69, 69, 83, 84, 108, 239, 262, 357 |
| yfjI | betI, lldR, yeiE, aaeR, nrdR, argP, fimZ, yjjQ | 8 | 0.11; 0.19; 0.19; 0.37; 0.13; 0.18; 0.13; 0.10 | 30, 69, 70, 84, 108, 239, 262, 357 |
| yfjJ | yncC, modE, galS, gadW, ypdC, cynR, dgsA, argP, melR, aaeR | 10 | 0.90; 0.10; 0.11; 0.13; 0.21; 0.19; 0.11; 0.20; 0.11; 0.11 | 6, 23, 97, 102, 104, 117, 123, 197, 205, 524 |
| yfjL,yfjK-yfjL | yhjC, lldR, cadC, relE, dicC, hcaR, yhfR, envY, dicA, yheO, ttk, yjjQ, nac | 13 | 0.18; 0.34; 0.20; 0.25; 0.41; 0.12; 0.11; 0.14; 0.23; 0.10; 0.24; 0.18; 0.12 | 5, 15, 28, 32, 36, 36, 44, 78, 92, 129, 140, 190, 358 |
| yfjM | yfeC, rutR, nac, ttk | 4 | 0.14; 0.14; 0.12; 0.13 | 62, 85, 347, 369 |
| yfjP-yfjQ | mraZ, yheO, ulaR, ybaQ, sxy, uxuR, argP, aaeR | 8 | 0.35; 0.12; 0.24; 0.27; 0.21; 0.13; 0.19; 0.20 | 5, 85, 91, 112, 135, 176, 223, 252 |
| yfjR-ypjK-yfjS-yfjT | ypdC, yncC | 2 | 0.14; 0.14 | 216, 278 |
| yfjU | pspF, yidZ, nac | 3 | 0.11; 0.30; 0.19 | 20, 101, 194 |
| yfjV | argP, dicC, nrdR, iclR, yeiI | 5 | 0.33; 0.22; 0.10; 0.20; 0.11 | 67, 170, 190, 191, 420 |
| yfjW | nrdR, cynR, yeiI, iclR | 4 | 0.10; 0.12; 0.11; 0.12 | 189, 242, 419, 443 |
| yfjX-yfjY-yfjZ-ypjF-ypjJ | cysB, yncC, ybaQ, aaeR, ulaR | 5 | 0.35; 0.26; 0.22; 0.21; 0.10 | 29, 115, 212, 240, 365 |
| ygaC | yafN, kdgR, yeiI, yagI, iclR | 5 | 0.36; 0.15; 0.34; 0.19; 0.20 | 11, 15, 84, 103, 197 |
| ygaM | yafN, kdgR, yagI, yeiI, iclR | 5 | 0.36; 0.15; 0.26; 0.34; 0.20 | 11, 14, 49, 83, 197 |
| ygaQ | zur, iclR, yafN, yncC, arsR, yjjQ, cynR | 7 | 0.10; 0.38; 0.20; 0.24; 0.19; 0.13; 0.11 | 23, 33, 66, 128, 183, 281, 284 |
| ygaU | ebgR, fimZ, yjjQ, cynR, dicA, nac | 6 | 0.14; 0.32; 0.24; 0.11; 0.12; 0.11 | 7, 67, 112, 271, 300, 377 |
| ygaV-ygaP | ebgR, fimZ, yjjQ, cynR, dicA, nac | 6 | 0.14; 0.32; 0.24; 0.11; 0.12; 0.11 | 8, 68, 113, 273, 300, 375 |
| ygaY | fimZ, yidZ, iclR | 3 | 0.14; 0.19; 0.15 | 220, 228, 335 |
| ygaZ-ygaH-mprA-emrA,ygaZ-ygaH | yncC | 1 | 0.19 | 185 |
| ygbA | yeiI, sxy, ypdC, nac, cynR, cbl | 6 | 0.91; 0.33; 0.21; 0.26; 0.16; 0.11 | 4, 64, 102, 130, 156, 240 |
| ygbF | yafN, allR, yfeC, argP, ybaQ, nac | 6 | 0.31; 0.13; 0.13; 0.20; 0.16; 0.11 | 19, 43, 68, 209, 348, 379 |
| ygbF-ygbT-casE-casD | yagI, yddM, yciT, arsR, argP, iclR, melR, aaeR, yidZ, ttk | 10 | 0.32; 0.12; 0.10; 0.21; 0.22; 0.20; 0.10; 0.20; 0.17; 0.12 | 20, 50, 57, 152, 181, 192, 228, 266, 275, 415 |
| ygbF-ygbT-casE-casD-casC-casB-casA | sxy, ypdC, sfsB, deoR, yidZ, ybaQ | 6 | 0.31; 0.24; 0.12; 0.10; 0.12; 0.11 | 72, 72, 338, 365, 414, 537 |
| ygbI | ygbI, deoR, dicA, cbl, arsR | 5 | 1.00; 0.24; 0.23; 0.14; 0.16 | 2, 57, 88, 163, 243 |
| ygbJ-ygbK,ygbJ-ygbK-ygbL-ygbM | ygbI, deoR, dicA, gcvA, cbl, arsR | 6 | 1.00; 0.24; 0.23; 0.14; 0.14; 0.16 | 1, 58, 88, 127, 164, 244 |
| ygbK | ycjW, melR, yeiE, uxuR, yidZ | 5 | 0.21; 0.14; 0.10; 0.13; 0.19 | 23, 153, 187, 197, 233 |
| ygbL-ygbM | pdhR, ybaQ, sxy, tyrR, lldR, yagI, ypdC | 7 | 0.16; 0.35; 0.23; 0.11; 0.14; 0.11; 0.13 | 34, 69, 111, 127, 144, 223, 247 |
| ygbN | dicA, matA, yafN, dicC, ttk | 5 | 0.25; 0.14; 0.11; 0.19; 0.15 | 67, 73, 214, 234, 309 |
| ygcB | sxy, yncC, sfsB, yidZ, iclR | 5 | 0.19; 0.17; 0.16; 0.17; 0.11 | 176, 205, 241, 264, 471 |
| ygcG | allR, nac, sfsB, cysB, yafN, dicA, yidZ, dicC, arsR | 9 | 0.17; 0.32; 0.29; 0.19; 0.14; 0.12; 0.14; 0.14; 0.10 | 18, 80, 99, 137, 138, 297, 335, 349, 456 |
| ygcQ-ygcR | racR, yncC, yeiI | 3 | 0.16; 0.23; 0.21 | 16, 138, 194 |
| ygcS | glnG, yagI, cysB, yidZ, ttk | 5 | 0.14; 0.15; 0.15; 0.18; 0.13 | 73, 135, 214, 248, 368 |
| ygcU | cynR, yheO, fimZ | 3 | 0.40; 0.13; 0.23 | 11, 76, 124 |
| ygcW | melR, deoR, ulaR, iscR, cysB, yidZ, dicC, iclR | 8 | 1.00; 0.25; 0.25; 0.12; 0.18; 0.13; 0.12; 0.10 | 1, 51, 81, 110, 151, 397, 459, 480 |
| ygdG | uxuR, ttk, sxy, ybaQ | 4 | 0.17; 0.20; 0.18; 0.15 | 119, 194, 197, 355 |
| ygdH,ygdH-sdaC | cysB, nac, ttk | 3 | 0.21; 0.27; 0.25 | 106, 119, 134 |
| ygdI | argR, dicA, dicC | 3 | 0.22; 0.15; 0.10 | 115, 204, 520 |
| ygdQ-ygdR,ygdQ | nsrR, glnG, ybaQ | 3 | 0.14; 0.15; 0.12 | 48, 65, 462 |
| ygdR | nagC, cusR, sxy, ttk, yncC, ybaQ, arsR | 7 | 0.16; 0.12; 0.32; 0.22; 0.10; 0.14; 0.11 | 26, 39, 70, 170, 395, 409, 439 |
| ygdT | iclR, glnG, mraZ, ulaR, uxuR, deoR | 6 | 0.35; 0.14; 0.10; 0.19; 0.13; 0.10 | 39, 82, 131, 162, 191, 359 |
| ygeA | yfeC, ybaQ, yeiI, uxuR, ypdC, lldR, aaeR, iclR | 8 | 0.18; 0.34; 0.34; 0.15; 0.14; 0.12; 0.22; 0.19 | 30, 73, 86, 138, 195, 209, 221, 230 |
| ygeA-araE,araE | pdhR, cpxR, argP, gcvA, arsR, sxy | 6 | 0.12; 0.13; 0.27; 0.11; 0.17; 0.12 | 66, 87, 114, 191, 223, 319 |
| ygeF | argR, trpR, arsR, yeiE, cynR, yjjQ, deoR, cbl, ulaR, argP | 10 | 0.93; 0.14; 0.25; 0.11; 0.14; 0.18; 0.15; 0.11; 0.14; 0.18 | 5, 15, 102, 162, 183, 183, 186, 223, 242, 243 |
| ygeG | yhfR, argR, aaeR, sfsB, argP, arsR | 6 | 0.11; 0.43; 0.38; 0.18; 0.21; 0.14 | 36, 44, 71, 186, 193, 291 |
| ygeH | cynR, dicC, cysB, gcvA, yncC, aaeR | 6 | 0.63; 0.24; 0.18; 0.13; 0.10; 0.12 | 2, 123, 149, 151, 403, 488 |
| ygeI | envY, gadW, cpxR, yhfR, tyrR, argP, yeiE, ulaR, ttk, aaeR, yncC | 11 | 0.28; 0.24; 0.24; 0.10; 0.17; 0.33; 0.10; 0.16; 0.18; 0.15; 0.10 | 12, 19, 21, 54, 57, 69, 191, 213, 229, 368, 400 |
| ygeK-ygeL | yfeC, srlR, nagC, dicC, argR, nrdR, yncC, fimZ | 8 | 0.16; 0.11; 0.11; 0.22; 0.18; 0.10; 0.17; 0.13 | 36, 41, 58, 175, 178, 187, 206, 255 |
| ygeN-ygeO-insD-4-insC-4-insCD4 | yhaJ, sfsB, deoR | 3 | 0.12; 0.15; 0.11 | 54, 256, 314 |
| ygeP | yhaJ, ybaQ, nac, sfsB | 4 | 0.12; 0.20; 0.16; 0.15 | 53, 234, 247, 255 |
| ygeQ | yncC, yidZ, ttk | 3 | 0.23; 0.19; 0.16 | 135, 240, 261 |
| ygeR,glyU-ygeR | ybaQ, cusR, melR, argR, argP | 5 | 0.45; 0.12; 0.15; 0.16; 0.17 | 36, 47, 134, 210, 262 |
| ygeV | ascG, cadC, yidZ, argR | 4 | 0.14; 0.37; 0.23; 0.12 | 5, 6, 166, 326 |
| ygeW | ascG, cadC, yjjQ, yidZ, deoR | 5 | 0.14; 0.33; 0.33; 0.23; 0.13 | 6, 8, 67, 165, 232 |
| ygeX | dicC, yncC | 2 | 0.24; 0.10 | 112, 405 |
| ygeY | treR | 1 | 0.20 | 68 |
| ygfF | nagC, uxuR, dgsA, iclR, nac | 5 | 0.14; 0.26; 0.13; 0.18; 0.15 | 39, 42, 80, 251, 254 |
| ygfI | yidZ, nac, cbl | 3 | 0.32; 0.27; 0.15 | 92, 124, 134 |
| ygfI-yggE-argO,argO | argP, rutR, glnG, yeiE, yjjQ, dicC, nac, cynR | 8 | 1.00; 0.30; 0.16; 0.18; 0.22; 0.23; 0.20; 0.12 | 1, 9, 57, 79, 147, 153, 180, 233 |
| ygfI5p | mraZ, uxuR, yidZ, ypdC, aaeR | 5 | 0.13; 0.11; 0.15; 0.11; 0.15 | 94, 264, 302, 319, 345 |
| ygfK-ssnA | ycjZ, deoR, sxy, melR, aaeR, dicC, fimZ, yjjQ, iclR | 9 | 0.13; 0.31; 0.37; 0.19; 0.25; 0.20; 0.13; 0.12; 0.12 | 13, 29, 56, 81, 176, 205, 252, 315, 437 |
| ygfM-xdhD | ybaQ, arsR, ttk | 3 | 0.24; 0.13; 0.13 | 170, 336, 363 |
| ygfS-ygfT | yncC, deoR | 2 | 0.51; 0.15 | 40, 190 |
| ygfZ | sxy, marA, yhfR, yidZ, uxuR, ttk, yncC | 7 | 0.61; 0.11; 0.10; 0.33; 0.13; 0.16; 0.12 | 9, 44, 48, 83, 195, 275, 358 |
| yggC-yggD,epd-yggC-yggD | cynR, ypdC | 2 | 0.14; 0.11 | 202, 306 |
| yggC-yggD-yggF-cmtA-cmtB-yggP | ygiT, cynR, sfsB, nac, argP, arsR | 6 | 0.14; 0.21; 0.29; 0.26; 0.16; 0.11 | 14, 94, 98, 127, 292, 432 |
| yggE | ycjW, mraZ, ypdC, aaeR, ttk | 5 | 0.25; 0.11; 0.13; 0.19; 0.11 | 13, 112, 222, 275, 469 |
| yggE-argO-mscS,mscS | yagI, ypdC, aaeR | 3 | 0.25; 0.15; 0.21 | 53, 182, 226 |
| yggI | lldR, ttk, sxy, ypdC, yidZ, yeiI | 6 | 0.28; 0.26; 0.20; 0.12; 0.17; 0.11 | 33, 124, 155, 248, 277, 409 |
| yggL,yggN-yggL | yhaJ | 1 | 0.40 | 8 |
| yggM | yfeT, yfhH, yciT | 3 | 0.22; 0.21; 0.13 | 3, 3, 26 |
| yggN | yhjC, ybaQ | 2 | 0.10; 0.13 | 28, 439 |
| yggN-yggL-trmI,yggL-trmI | exuR, uxuR, ybaQ | 3 | 0.11; 0.18; 0.14 | 87, 106, 386 |
| yggR | sxy | 1 | 0.49 | 28 |
| yggS-yggT-yggU-rdgB-yggW | sxy | 1 | 0.49 | 29 |
| yggT-yggU-rdgB-yggW | deoR, dgsA, cysB | 3 | 0.24; 0.14; 0.11 | 55, 64, 332 |
| yggX,yggX-mltC-nupG,yggX-mltC | sxy, sfsB, deoR, yncC | 4 | 0.17; 0.17; 0.14; 0.16 | 203, 205, 206, 225 |
| yghA | ycjW, hcaR, nsrR, nac, yidZ, aaeR | 6 | 0.16; 0.10; 0.13; 0.27; 0.20; 0.11 | 44, 50, 57, 118, 211, 509 |
| yghB | yheO, cbl, envY, allR, yjjQ, yagI | 6 | 0.14; 0.21; 0.15; 0.11; 0.23; 0.13 | 48, 69, 70, 81, 119, 168 |
| yghD-yghE | fimZ, ttk, sfsB | 3 | 0.38; 0.25; 0.16 | 47, 133, 242 |
| yghF | ygiT, nsrR, sfsB, aaeR, ypdC, fimZ, ttk | 7 | 0.15; 0.14; 0.23; 0.27; 0.16; 0.14; 0.12 | 12, 46, 139, 154, 156, 233, 405 |
| yghG | ygiT, nsrR, yncC, aaeR | 4 | 0.15; 0.14; 0.44; 0.27 | 13, 45, 54, 155 |
| yghO | iscR, yagI | 2 | 0.19; 0.19 | 35, 86 |
| yghQ | basR, ypdC, yagI, ttk | 4 | 0.17; 0.20; 0.15; 0.17 | 22, 115, 137, 246 |
| yghR-yghS | deoR, sxy, iscR, melR, dicA | 5 | 0.26; 0.21; 0.10; 0.11; 0.11 | 41, 137, 147, 202, 335 |
| yghT | deoR, sxy, iscR, melR, dicA | 5 | 0.26; 0.21; 0.10; 0.11; 0.11 | 42, 138, 148, 203, 335 |
| yghU | hcaR, yncC, pdhR, sfsB, ttk | 5 | 0.12; 0.55; 0.12; 0.11; 0.11 | 35, 37, 60, 368, 447 |
| yghX | yfeC, gadW, cadC, cbl | 4 | 0.17; 0.17; 0.12; 0.14 | 32, 61, 103, 154 |
| ygiB-ygiC | ycjZ, ybiH, yeiE, ttk, fimZ, yidZ | 6 | 0.14; 0.12; 0.19; 0.18; 0.12; 0.11 | 10, 36, 77, 215, 287, 439 |
| ygiD | cbl, yidZ | 2 | 0.14; 0.13 | 160, 379 |
| ygiL | yeiE, cynR, sfsB, nac, dicA, iclR, argR | 7 | 0.12; 0.16; 0.19; 0.19; 0.15; 0.17; 0.10 | 158, 163, 177, 190, 219, 265, 366 |
| ygiM,ygiM-cca | iclR, deoR, ybaQ, nac, gcvA, arsR | 6 | 0.43; 0.22; 0.31; 0.22; 0.12; 0.13 | 23, 74, 87, 166, 181, 334 |
| ygiN | allR, yfeC, matA, dicA, yidZ, yncC | 6 | 0.14; 0.11; 0.12; 0.19; 0.20; 0.17 | 37, 92, 96, 133, 208, 211 |
| ygiQ | yafN, yegW, nac, treR, ypdC | 5 | 0.29; 0.11; 0.25; 0.12; 0.12 | 23, 31, 137, 159, 277 |
| ygiS | argR, purR, ybhD, gadW, arsR | 5 | 0.70; 0.13; 0.17; 0.12; 0.11 | 13, 13, 14, 114, 441 |
| ygiS-ygiT-mqsR,ygiT-mqsR | ygiT, deoR, dicA, yeiI, cbl, ttk | 6 | 1.00; 0.32; 0.25; 0.30; 0.16; 0.14 | 1, 22, 64, 106, 130, 333 |
| ygiT | ygiT, deoR, dicA, gadW, cbl, uxuR, cynR, ttk | 8 | 1.00; 0.32; 0.25; 0.12; 0.16; 0.10; 0.11; 0.14 | 1, 23, 65, 113, 129, 280, 282, 334 |
| ygiV | treR, ycjW, argP, yegW, yddM, arsR | 6 | 0.46; 0.30; 0.39; 0.10; 0.10; 0.11 | 4, 7, 41, 44, 76, 412 |
| ygiV-ygiW,ygiW | argP, yafN | 2 | 0.39; 0.12 | 40, 204 |
| ygiZ | srlR, nsrR, cbl, yheO, yncC, nac, argP, yeiI, arsR, ypdC | 10 | 0.33; 0.16; 0.23; 0.14; 0.40; 0.25; 0.23; 0.19; 0.15; 0.10 | 4, 27, 46, 52, 69, 135, 168, 228, 283, 340 |
| ygjH | ebgR, ycgE, yheO, nrdR, yafN, ttk, ypdC | 7 | 0.47; 0.12; 0.17; 0.15; 0.16; 0.25; 0.10 | 3, 8, 33, 90, 106, 135, 335 |
| ygjI | arsR, cysB, yeiI | 3 | 0.53; 0.23; 0.23 | 13, 85, 155 |
| ygjJ-ygjK | sxy, arsR | 2 | 0.13; 0.11 | 269, 413 |
| ygjP | purR, sxy, yjjQ | 3 | 0.11; 0.23; 0.10 | 20, 122, 349 |
| ygjQ | galS, glnG, yagI, yeiE, dicA, gcvA | 6 | 0.19; 0.21; 0.16; 0.12; 0.18; 0.11 | 17, 28, 122, 140, 146, 210 |
| ygjR | ybcM, ybaQ, melR, yncC | 4 | 0.11; 0.51; 0.17; 0.13 | 16, 23, 107, 305 |
| ygjV | ybhD, sfsB, treR, yagI, iclR, aaeR, yidZ | 7 | 0.10; 0.33; 0.17; 0.13; 0.20; 0.14; 0.12 | 50, 81, 104, 173, 213, 404, 424 |
| ygjV-uxaA-uxaC,uxaA-uxaC | exuR, ybcM, dgsA, yheO, ttk, sxy | 6 | 1.00; 0.12; 0.16; 0.15; 0.19; 0.14 | 2, 15, 39, 44, 210, 264 |
| yhaB-yhaC | ulaR, allR, yheO, rutR, argP, nac, yeiI | 7 | 0.81; 0.12; 0.13; 0.10; 0.15; 0.12; 0.11 | 3, 55, 61, 149, 316, 341, 436 |
| yhaH | nrdR, dicA, yeiI, ulaR, argP, arsR | 6 | 0.17; 0.25; 0.33; 0.15; 0.14; 0.11 | 63, 66, 93, 234, 330, 430 |
| yhaI | ycjZ, ybiH, arsR, treR, nac | 5 | 0.13; 0.13; 0.20; 0.12; 0.21 | 14, 28, 162, 166, 176 |
| yhaJ | yhaJ, dicA, yciT, sxy, yeiE, dicC, ybaQ | 7 | 0.89; 0.53; 0.16; 0.30; 0.10; 0.18; 0.14 | 3, 8, 14, 73, 185, 251, 412 |
| yhaK-yhaL | yhaJ, yciT, yeiE, treR, dicC, ybaQ | 6 | 0.89; 0.16; 0.10; 0.10; 0.18; 0.14 | 3, 13, 184, 222, 251, 413 |
| yhaO-yhaM | glnG, envY, uxuR, sxy | 4 | 0.15; 0.12; 0.10; 0.10 | 61, 96, 285, 358 |
| yhbO | gadW | 1 | 0.10 | 159 |
| yhbP | cusR, yidZ, yeiE | 3 | 0.10; 0.36; 0.10 | 64, 69, 183 |
| yhbP-yhbS-yhbT,yhbS-yhbT | ybcM, tyrR, basR, cysB, cbl, argR | 6 | 1.00; 0.19; 0.12; 0.19; 0.13; 0.10 | 2, 37, 51, 131, 178, 364 |
| yhbQ | cusR | 1 | 0.10 | 63 |
| yhbU-yhbV-yhbW,yhbU-yhbV | ybcM, tyrR, basR, cysB, cbl, argR | 6 | 1.00; 0.19; 0.12; 0.19; 0.13; 0.10 | 1, 37, 50, 130, 179, 365 |
| yhbW | ulaR, rutR, sxy, lldR, ybaQ, aaeR | 6 | 0.27; 0.13; 0.18; 0.12; 0.13; 0.11 | 72, 102, 185, 201, 438, 492 |
| yhbX | trpR, kdgR, cynR, yheO, nsrR, treR, dicC, uxuR | 8 | 0.13; 0.13; 0.22; 0.12; 0.10; 0.12; 0.21; 0.11 | 23, 27, 74, 84, 111, 161, 178, 251 |
| yhbY | glpR, treR, yncC, yidZ, uxuR, iclR | 6 | 0.13; 0.37; 0.35; 0.19; 0.10; 0.13 | 9, 9, 82, 232, 290, 404 |
| yhcA-yhcD | gcvA, cynR, dgsA, rutR, ypdC, argR, aaeR | 7 | 0.21; 0.23; 0.13; 0.14; 0.21; 0.18; 0.21 | 60, 64, 81, 83, 93, 175, 233 |
| yhcB,yhcB-degQ | iscR, aaeR, argR, lldR, yncC | 5 | 0.17; 0.43; 0.18; 0.10; 0.13 | 47, 48, 181, 280, 329 |
| yhcC | argR, yeiE, iclR, ybaQ, ulaR, nac | 6 | 0.46; 0.24; 0.32; 0.20; 0.11; 0.10 | 34, 43, 53, 235, 343, 410 |
| yhcC5p | allR, yafN, yidZ, ypdC | 4 | 0.15; 0.23; 0.37; 0.19 | 31, 44, 63, 132 |
| yhcE | yafN, nac, gcvA, gadW, yeiE, iclR, arsR | 7 | 0.29; 0.37; 0.16; 0.11; 0.10; 0.19; 0.12 | 24, 59, 111, 139, 186, 228, 379 |
| yhcF | yagI, aaeR, yafN, dicA, fimZ | 5 | 0.19; 0.22; 0.10; 0.13; 0.10 | 94, 223, 254, 266, 322 |
| yhcF3p | ycjW, uxuR, cysB | 3 | 0.14; 0.16; 0.14 | 51, 121, 234 |
| yhcG | ycjW, ulaR, aaeR, dgsA, sfsB, cbl, ttk | 7 | 0.19; 0.38; 0.46; 0.14; 0.17; 0.10; 0.13 | 24, 34, 39, 63, 212, 242, 359 |
| yhcH-nanK-nanE-nanT-nanA,nanE-nanT-nanA,nanA | exuR, relE, galS, nac, ulaR | 5 | 0.28; 0.16; 0.12; 0.25; 0.11 | 11, 63, 80, 140, 350 |
| yhcN | arsR, marA, exuR, argP, lldR, ycjW, yhaJ, matA, galS, yidZ, yeiE, uxuR, cbl, dicC | 14 | 1.00; 0.25; 0.19; 0.43; 0.26; 0.15; 0.11; 0.13; 0.10; 0.27; 0.11; 0.12; 0.10; 0.12 | 1, 4, 27, 34, 34, 48, 67, 88, 105, 118, 171, 206, 254, 440 |
| yhcO | srlR, nrdR, ttk, yagI, lldR, ypdC | 6 | 0.11; 0.17; 0.28; 0.13; 0.13; 0.11 | 40, 62, 100, 166, 189, 307 |
| yhdJ | rutR, yagI, aaeR, cadC, gadW, lldR, ttk | 7 | 0.50; 0.46; 0.76; 0.14; 0.12; 0.12; 0.11 | 2, 6, 10, 71, 127, 226, 470 |
| yhdT-panF-prmA-dusB,yhdT-panF-prmA | ypdC, iclR, ttk, sxy, ybaQ | 5 | 0.31; 0.20; 0.17; 0.11; 0.14 | 50, 214, 248, 337, 418 |
| yhdU | yhfR, cadC, gcvA, dicA, argR, dicC, ulaR | 7 | 0.15; 0.12; 0.13; 0.13; 0.13; 0.15; 0.10 | 14, 94, 139, 268, 299, 324, 361 |
| yhdV | cynR, fimZ, cysB, iclR, sxy, yidZ, aaeR | 7 | 0.34; 0.36; 0.27; 0.23; 0.20; 0.23; 0.15 | 25, 48, 51, 143, 153, 154, 348 |
| yhdW-yhdX-yhdY-yhdZ | yciT, relE, glnG, nac, yjjQ, yidZ | 6 | 0.13; 0.24; 0.19; 0.37; 0.11; 0.14 | 32, 36, 42, 60, 332, 354 |
| yheS-yheT-yheU-prkB,yheS-yheT-yheU | matA, lldR, melR, yidZ, cysB, dicA, yeiI, cynR, sfsB | 9 | 0.13; 0.18; 0.11; 0.19; 0.13; 0.12; 0.16; 0.10; 0.11 | 81, 82, 206, 222, 266, 282, 286, 298, 381 |
| yhfA | aaeR, marA, glnG, iclR | 4 | 0.74; 0.11; 0.15; 0.21 | 16, 37, 63, 174 |
| yhfK | rutR, yeiI, yjjQ | 3 | 0.16; 0.16; 0.12 | 54, 282, 314 |
| yhfL | ybaQ, matA, argR, tyrR, sfsB, iclR, nac | 7 | 0.45; 0.17; 0.38; 0.15; 0.12; 0.14; 0.12 | 34, 43, 51, 79, 319, 359, 368 |
| yhfR | yafN, argP | 2 | 0.24; 0.19 | 39, 225 |
| yhfS-yhfT-yhfU-php-yhfW-yhfX | racR, nsrR, matA, ypdC, ybaQ | 5 | 0.16; 0.12; 0.13; 0.15; 0.11 | 17, 79, 89, 183, 526 |
| yhfY-yhfZ,yhfZ | yhfZ, yheO, yafN | 3 | 1.00; 0.10; 0.10 | 1, 132, 240 |
| yhgA | sxy, yidZ, yjjQ, sfsB | 4 | 0.43; 0.23; 0.11; 0.12 | 35, 161, 331, 351 |
| yhgE | ygiT, kdgR, yciT, allR, iclR, aaeR, arsR, ypdC | 8 | 0.15; 0.13; 0.11; 0.10; 0.25; 0.25; 0.16; 0.12 | 10, 23, 49, 90, 127, 179, 234, 278 |
| yhgF-feoA,yhgF | yjjQ, sfsB, uxuR | 3 | 0.28; 0.29; 0.11 | 97, 101, 262 |
| yhgN | ybhD, envY, ypdC, argP, fimZ, yjjQ | 6 | 0.23; 0.16; 0.24; 0.22; 0.16; 0.12 | 8, 63, 73, 172, 188, 318 |
| yhgO | uxuR, lldR, argR, dicC | 4 | 0.25; 0.19; 0.18; 0.15 | 49, 73, 173, 316 |
| yhgP | uxuR, lldR, argR, dicC | 4 | 0.25; 0.19; 0.18; 0.15 | 49, 73, 173, 316 |
| yhhA | melR, pdhR, basR, lldR | 4 | 0.27; 0.13; 0.10; 0.13 | 31, 46, 76, 179 |
| yhhH | glpR, hcaR, sfsB, mraZ, lldR, yeiI, yncC, dicA, ttk, dicC | 10 | 0.13; 0.12; 0.31; 0.12; 0.13; 0.19; 0.15; 0.13; 0.16; 0.11 | 8, 33, 89, 100, 171, 227, 249, 274, 274, 487 |
| yhhI | cysB, arsR, yjjQ, cadC, relE, yagI, ulaR, yncC, dicC | 9 | 0.28; 0.28; 0.23; 0.10; 0.10; 0.13; 0.16; 0.14; 0.14 | 46, 73, 124, 127, 130, 159, 220, 284, 361 |
| yhhJ-rbbA-yhiI,rbbA-yhiI | yjiR, matA, yidZ | 3 | 0.14; 0.14; 0.10 | 10, 71, 486 |
| yhhM | envY, yddM, arsR, cbl, yagI, yafN, ybaQ | 7 | 1.00; 0.18; 0.35; 0.15; 0.10; 0.10; 0.15 | 1, 18, 46, 135, 233, 244, 373 |
| yhhN,yhhN-zntA | envY, yddM, arsR, ybaQ, cbl, yagI, yafN | 7 | 1.00; 0.18; 0.35; 0.23; 0.11; 0.10; 0.10 | 2, 19, 47, 183, 212, 234, 244 |
| yhhQ | yeiI, nac, argP | 3 | 0.21; 0.18; 0.11 | 184, 204, 412 |
| yhhS | kdgR, galS, envY, ybaQ, deoR, yidZ | 6 | 0.17; 0.14; 0.16; 0.23; 0.10; 0.11 | 11, 37, 65, 187, 343, 465 |
| yhhT | kdgR, galS, envY, sfsB, deoR | 5 | 0.17; 0.14; 0.16; 0.13; 0.10 | 11, 38, 66, 310, 344 |
| yhhW | yhaJ, sxy, ulaR, nac, yidZ | 5 | 0.61; 0.20; 0.18; 0.15; 0.12 | 5, 156, 182, 253, 406 |
| yhhW-yhhX,yhhX | racR, nsrR, arsR, iclR, sfsB, melR | 6 | 0.17; 0.22; 0.32; 0.28; 0.22; 0.13 | 10, 14, 61, 91, 143, 174 |
| yhhY | racR, nsrR, arsR, iclR, sfsB, melR | 6 | 0.17; 0.22; 0.32; 0.28; 0.22; 0.13 | 10, 13, 60, 89, 142, 175 |
| yhhZ-insA-6-insB-6-insAB6 | iclR, aaeR, relE, cynR, cbl, melR, dicA, ybaQ | 8 | 0.46; 0.42; 0.14; 0.15; 0.12; 0.11; 0.10; 0.10 | 19, 53, 85, 165, 188, 214, 352, 544 |
| yhiD | yjiR, yafN, nrdR, sxy, yidZ, iclR | 6 | 0.11; 0.22; 0.14; 0.25; 0.21; 0.19 | 32, 49, 98, 99, 192, 216 |
| yhiD-hdeB-hdeA,hdeB-hdeA | srlR, fimZ, argR, yafN, cbl, yjjQ | 6 | 0.32; 0.41; 0.18; 0.11; 0.10; 0.11 | 7, 39, 179, 209, 258, 326 |
| yhiJ | nsrR, yegW, dgsA, yfeC, sxy, yeiI, dicA, arsR, yjjQ, deoR, yncC | 11 | 0.18; 0.11; 0.17; 0.12; 0.24; 0.25; 0.17; 0.20; 0.19; 0.11; 0.13 | 21, 27, 32, 78, 108, 137, 158, 163, 176, 308, 310 |
| yhiL | ulaR, cynR, yncC, yhaJ, argR, dicA, ybaQ | 7 | 0.38; 0.25; 0.40; 0.11; 0.16; 0.12; 0.16 | 37, 53, 64, 69, 216, 304, 340 |
| yhiM | ulaR, cynR, yncC, argR, yidZ, cysB, dicA, ybaQ | 8 | 0.38; 0.25; 0.40; 0.16; 0.18; 0.13; 0.12; 0.16 | 36, 52, 65, 216, 253, 267, 303, 340 |
| yhiN | cynR, galS, ycjW, treR, yafN, arsR, yeiI | 7 | 1.00; 0.14; 0.13; 0.15; 0.14; 0.15; 0.13 | 1, 41, 66, 114, 130, 272, 337 |
| yhiS | yncC, ypdC, ttk, cynR, cysB, nac, argP | 7 | 0.49; 0.14; 0.16; 0.11; 0.12; 0.10; 0.11 | 43, 221, 265, 286, 301, 390, 406 |
| yhiY | dicA, yjiR, matA, lldR, dicC, yidZ | 6 | 0.61; 0.14; 0.14; 0.13; 0.19; 0.10 | 6, 11, 70, 187, 235, 487 |
| yhjA | fimZ, yjjQ, argP, ttk, cynR | 5 | 0.42; 0.28; 0.20; 0.15; 0.10 | 33, 86, 200, 298, 305 |
| yhjB | yjjQ, basR, yidZ, argP | 4 | 0.57; 0.11; 0.29; 0.15 | 17, 63, 102, 303 |
| yhjC,yhjC-yhjD | allR, yjjQ, racR, pdhR, yddM, yidZ, iclR, yeiI, argP, dicC, aaeR | 11 | 0.20; 0.57; 0.13; 0.15; 0.11; 0.29; 0.22; 0.15; 0.15; 0.13; 0.10 | 13, 16, 30, 38, 66, 103, 165, 291, 302, 383, 526 |
| yhjD | treR, ybaQ | 2 | 0.17; 0.11 | 97, 524 |
| yhjE | gadW, cynR, dicA, sxy | 4 | 0.14; 0.17; 0.15; 0.16 | 96, 129, 211, 231 |
| yhjH | kdgR, basR, rutR, yagI, uxuR, tyrR, yncC, deoR | 8 | 0.39; 0.15; 0.15; 0.19; 0.19; 0.10; 0.16; 0.10 | 4, 29, 76, 81, 92, 176, 238, 340 |
| yhjJ | uxuR, mraZ, yeiE, ttk, cysB, ypdC | 6 | 0.21; 0.13; 0.11; 0.20; 0.15; 0.10 | 73, 85, 164, 186, 203, 334 |
| yhjK | rutR, arsR, ybaQ, cysB, yeiI | 5 | 0.19; 0.34; 0.27; 0.13; 0.12 | 41, 55, 117, 259, 394 |
| yhjV | sxy | 1 | 0.20 | 150 |
| yhjX | gcvA, matA, yeiE, dicC, ybaQ, ttk, cbl, sxy | 8 | 0.17; 0.11; 0.12; 0.22; 0.24; 0.18; 0.11; 0.10 | 87, 133, 156, 173, 174, 219, 225, 362 |
| yhjY | galS, mraZ, yncC, fimZ, aaeR | 5 | 0.14; 0.12; 0.24; 0.12; 0.15 | 33, 101, 130, 269, 371 |
| yiaA | pepA, cynR, aaeR, rutR, treR, ybaQ | 6 | 0.11; 0.24; 0.38; 0.12; 0.12; 0.22 | 25, 59, 70, 119, 174, 197 |
| yiaB | aaeR, matA, mraZ, ybaQ, ttk, ulaR | 6 | 0.38; 0.13; 0.11; 0.22; 0.18; 0.13 | 69, 79, 111, 196, 216, 279 |
| yiaD | matA, yheO, aaeR, dicA, nac, iscR, cysB, uxuR, yjjQ | 9 | 0.49; 0.13; 0.31; 0.19; 0.26; 0.10; 0.17; 0.14; 0.15 | 6, 59, 125, 131, 134, 144, 166, 171, 235 |
| yiaF | yncC, yeiE, yjjQ, ttk | 4 | 0.91; 0.34; 0.52; 0.13 | 4, 18, 21, 390 |
| yiaG | yncC, yjjQ, yagI, ttk | 4 | 0.91; 0.52; 0.13; 0.13 | 4, 21, 169, 389 |
| yiaK-yiaL-yiaM-yiaN-yiaO-lyxK-sgbH-sgbU-sgbE | melR, dgsA, yidZ, yncC | 4 | 0.49; 0.10; 0.20; 0.16 | 4, 151, 206, 231 |
| yiaT | modE, yeiE, racR, gadW, fimZ, yafN, cysB | 7 | 0.14; 0.30; 0.12; 0.18; 0.31; 0.17; 0.11 | 4, 29, 37, 44, 77, 91, 341 |
| yiaU | modE, yeiE, racR, gadW, fimZ, yafN, cysB | 7 | 0.14; 0.56; 0.12; 0.18; 0.31; 0.17; 0.11 | 3, 8, 36, 45, 76, 90, 342 |
| yiaY | ybhD, ybiH, nagC, cadC, yidZ, argP | 6 | 0.27; 0.16; 0.14; 0.18; 0.12; 0.10 | 5, 9, 40, 41, 434, 442 |
| yibA | ulaR, ypdC, argR | 3 | 0.20; 0.16; 0.15 | 137, 162, 240 |
| yibG | yhfR, ycjZ, envY, cusR, dicC, deoR, cbl, ulaR | 8 | 0.18; 0.18; 0.20; 0.11; 0.31; 0.15; 0.13; 0.10 | 3, 4, 33, 53, 62, 169, 177, 368 |
| yibH-yibI | deoR, nac, cadC, nrdR, fimZ, yjjQ, yeiI, arsR | 8 | 0.47; 0.61; 0.14; 0.15; 0.19; 0.19; 0.11; 0.11 | 4, 15, 70, 86, 155, 177, 423, 443 |
| yibL | ybiH, allR, yidZ, glnG, yafN, ulaR, ypdC, iclR | 8 | 0.16; 0.11; 0.32; 0.11; 0.13; 0.13; 0.12; 0.14 | 7, 85, 89, 124, 149, 272, 274, 364 |
| yibS | ycjZ, treR, lldR, envY, dicC, sfsB, fimZ, yjjQ | 8 | 0.18; 0.34; 0.29; 0.20; 0.37; 0.32; 0.17; 0.12 | 5, 15, 25, 34, 41, 83, 177, 313 |
| yibT | ybiH, allR, yidZ, glnG, yafN, ulaR, ypdC, iclR | 8 | 0.16; 0.11; 0.32; 0.11; 0.13; 0.13; 0.12; 0.14 | 7, 85, 89, 124, 149, 272, 273, 364 |
| yibV | basR, galS, sfsB, ttk | 4 | 0.19; 0.13; 0.19; 0.20 | 15, 57, 179, 187 |
| yibX | allR, gcvA, cpxR, arsR, nrdR, treR, sxy, cbl, melR, dicA, lldR | 11 | 0.22; 0.22; 0.11; 0.20; 0.10; 0.11; 0.17; 0.11; 0.10; 0.14; 0.10 | 10, 53, 131, 169, 198, 201, 204, 229, 232, 234, 267 |
| yibY | allR, cpxR, gcvA, arsR, nrdR, treR, sxy, cbl, melR, dicA, lldR, uxuR | 12 | 0.22; 0.11; 0.13; 0.20; 0.10; 0.11; 0.17; 0.11; 0.10; 0.14; 0.10; 0.11 | 9, 130, 152, 169, 199, 202, 204, 228, 232, 234, 268, 268 |
| yicC | sfsB, nac, ttk | 3 | 0.28; 0.14; 0.11 | 103, 296, 433 |
| yicG | gcvA, nagC, tyrR, yeiI, nac, matA, melR | 7 | 1.00; 0.13; 0.16; 0.33; 0.28; 0.11; 0.11 | 1, 44, 69, 91, 106, 117, 218 |
| yicH | treR, glnG, ttk, yncC, fimZ | 5 | 0.21; 0.14; 0.28; 0.18; 0.11 | 58, 81, 108, 190, 310 |
| yicI-yicJ | yhfR, yeaT, cynR, yafN, gcvA, nac, yncC, yagI, cysB, ulaR, argP | 11 | 0.17; 0.12; 0.26; 0.18; 0.16; 0.22; 0.17; 0.11; 0.13; 0.11; 0.12 | 5, 7, 49, 85, 108, 167, 202, 212, 269, 332, 382 |
| yicL | hcaR, iclR, argP, ulaR, dicC, aaeR | 6 | 0.10; 0.32; 0.32; 0.13; 0.15; 0.16 | 53, 54, 73, 270, 303, 344 |
| yicN | yeiI, ybaQ, ulaR | 3 | 1.00; 0.68; 0.10 | 1, 12, 359 |
| yicS | yafN, envY, cysB, arsR, yeiI, argR, yidZ, ttk | 8 | 0.28; 0.17; 0.21; 0.24; 0.19; 0.13; 0.13; 0.11 | 29, 57, 101, 107, 221, 290, 367, 436 |
| yicU | cusR, gcvA, sfsB | 3 | 0.12; 0.24; 0.10 | 38, 52, 410 |
| yidA | yhfR, exuR, argR, aaeR, ttk | 5 | 0.14; 0.10; 0.17; 0.13; 0.10 | 17, 96, 198, 440, 476 |
| yidB-gyrB,gyrB | cpxR, yhjC, matA, yeiE, argP | 5 | 0.27; 0.11; 0.20; 0.15; 0.16 | 14, 25, 32, 104, 277 |
| yidC-mnmE,yidC | treR, lldR, melR | 3 | 0.38; 0.16; 0.11 | 8, 105, 210 |
| yidE | yfeC, argR, yafN, ybaQ | 4 | 0.18; 0.23; 0.13; 0.10 | 31, 104, 164, 558 |
| yidF | ybiH, melR, arsR, ybaQ | 4 | 0.14; 0.11; 0.15; 0.13 | 16, 201, 273, 442 |
| yidF-yidG-yidH | ulaR | 1 | 0.12 | 310 |
| yidI | ybiH | 1 | 0.14 | 15 |
| yidJ-yidK | dicC, envY, gcvA, argP, nac, dicA | 6 | 0.45; 0.18; 0.21; 0.34; 0.24; 0.10 | 19, 49, 59, 65, 145, 351 |
| yidL | dicC, envY, gcvA, argP, nac, dicA | 6 | 0.45; 0.18; 0.21; 0.34; 0.24; 0.10 | 20, 48, 58, 64, 146, 350 |
| yidP | deoR, iscR, yjjQ, argR, lldR | 5 | 0.20; 0.11; 0.18; 0.14; 0.11 | 93, 118, 182, 241, 252 |
| yidQ | marA, ybaQ, melR, sxy, dicC | 5 | 1.00; 0.76; 0.28; 0.15; 0.11 | 1, 9, 28, 251, 476 |
| yidX | dgoR, ycjZ, ygiT, yjjQ | 4 | 1.00; 0.10; 0.10; 0.20 | 1, 39, 44, 171 |
| yidZ | nac, dicC, ttk | 3 | 0.18; 0.20; 0.13 | 203, 218, 361 |
| yieE,yieE-chrR | argP, ycjZ, yheO, yidZ, aaeR, iclR | 6 | 0.64; 0.11; 0.10; 0.17; 0.14; 0.12 | 12, 24, 119, 267, 390, 444 |
| yieH | purR, yheO, arsR, tyrR, nac, cynR, dicC | 7 | 0.17; 0.16; 0.24; 0.11; 0.16; 0.12; 0.11 | 3, 36, 114, 129, 233, 236, 484 |
| yieK-yieL-bglH | lldR, treR, yegW, yeiE, arsR, aaeR | 6 | 0.31; 0.25; 0.10; 0.13; 0.15; 0.11 | 21, 40, 40, 138, 275, 515 |
| yifB | pdhR, iclR, yeiE, aaeR, dicC | 5 | 0.16; 0.34; 0.23; 0.39; 0.15 | 32, 42, 46, 62, 321 |
| yifE | yjiR, galS, yhaJ, argP | 4 | 0.14; 0.18; 0.12; 0.17 | 14, 19, 56, 271 |
| yifK-argX-hisR-leuT-proM,yifK | sfsB, cpxR | 2 | 0.69; 0.14 | 11, 84 |
| yifN | envY, dicA, argR | 3 | 0.12; 0.18; 0.16 | 98, 143, 220 |
| yigE | sfsB, melR, ttk | 3 | 0.40; 0.17; 0.13 | 49, 103, 375 |
| yigE5p | argP, dgsA, relE, yidZ | 4 | 0.30; 0.11; 0.11; 0.17 | 94, 120, 129, 272 |
| yigF-yigG | allR, galS, ulaR, aaeR, yidZ, yjjQ, yncC | 7 | 0.13; 0.13; 0.30; 0.21; 0.17; 0.10; 0.11 | 40, 56, 59, 237, 262, 360, 366 |
| yigM | uxuR, ttk | 2 | 0.13; 0.15 | 184, 303 |
| yihA | uvrY, cbl, yddM, cpxR, matA, fimZ, aaeR, cynR, arsR, ypdC | 10 | 1.00; 0.27; 0.12; 0.16; 0.13; 0.26; 0.30; 0.12; 0.14; 0.10 | 1, 31, 51, 58, 84, 103, 131, 253, 302, 337 |
| yihD,yihD-srkA-dsbA,yihD-srkA | lldR, iclR, nac, fimZ | 4 | 0.59; 0.28; 0.31; 0.12 | 2, 82, 91, 271 |
| yihF | ypdC, cbl, fimZ, ybaQ | 4 | 0.16; 0.11; 0.12; 0.18 | 163, 227, 266, 296 |
| yihG | allR, yddM, melR, gcvA | 4 | 0.12; 0.12; 0.21; 0.12 | 56, 56, 61, 178 |
| yihI,yihI-hemN | uvrY, cbl, yddM, gadW, fimZ, aaeR, nac, yeiI, arsR, ypdC | 10 | 0.87; 0.27; 0.12; 0.17; 0.26; 0.30; 0.20; 0.18; 0.14; 0.10 | 3, 30, 53, 57, 102, 132, 179, 249, 301, 339 |
| yihL-yihM-yihN,yihL-yihM | cysB, rutR, ttk, gcvA, deoR, aaeR, ypdC, arsR | 8 | 0.27; 0.16; 0.33; 0.14; 0.15; 0.20; 0.11; 0.11 | 52, 58, 70, 133, 201, 253, 324, 415 |
| yihN | pdhR, matA, nsrR, cysB, ybaQ, rutR, dicC, argP, yidZ | 9 | 0.16; 0.17; 0.13; 0.26; 0.29; 0.12; 0.22; 0.18; 0.15 | 36, 47, 59, 67, 101, 121, 172, 249, 314 |
| yihO-yihP | ygiT, treR, nac | 3 | 0.11; 0.20; 0.15 | 39, 69, 252 |
| yihQ | sfsB, yheO, deoR, fimZ, argR, gcvA, yjjQ | 7 | 0.40; 0.12; 0.16; 0.17; 0.18; 0.12; 0.12 | 52, 86, 166, 180, 186, 186, 308 |
| yihR | ygiT, argR, pdhR, ybaQ | 4 | 0.57; 0.38; 0.11; 0.15 | 3, 50, 77, 359 |
| yihS-yihT-yihU | yihW, ulaR, argP | 3 | 1.00; 0.39; 0.13 | 1, 29, 341 |
| yihV-yihW | yihW, ulaR, argP | 3 | 1.00; 0.39; 0.13 | 1, 29, 340 |
| yihW | yihW, yeiE, ulaR, lldR, fimZ | 5 | 0.14; 0.20; 0.25; 0.16; 0.11 | 3, 65, 88, 107, 293 |
| yihX-yihY-dtd-yiiD | yciT, nrdR | 2 | 0.12; 0.16 | 33, 73 |
| yiiE | sxy, dicA, yncC | 3 | 0.28; 0.17; 0.11 | 78, 166, 372 |
| yiiF | pspF, iclR, sfsB, sxy, dicA, yncC | 6 | 0.15; 0.48; 0.40; 0.24; 0.16; 0.11 | 9, 15, 48, 106, 181, 374 |
| yiiG | galS, tyrR, argP, yncC | 4 | 0.15; 0.12; 0.17; 0.14 | 29, 111, 273, 291 |
| yiiM | argR, nrdR, yeiE, treR, dicC | 5 | 0.84; 0.13; 0.13; 0.12; 0.22 | 7, 107, 123, 155, 168 |
| yiiR | iclR | 1 | 0.23 | 140 |
| yiiS-uspD | gadW, sfsB, aaeR | 3 | 0.24; 0.17; 0.14 | 17, 203, 395 |
| yiiX | yncC, yhaJ, envY, yeiI, deoR, ttk, ybaQ | 7 | 1.00; 0.13; 0.11; 0.18; 0.13; 0.14; 0.14 | 1, 52, 114, 257, 261, 343, 420 |
| yiiX-metJ,metJ | yncC, nagC, rutR, matA, cynR, yeiI, deoR, ttk | 8 | 0.99; 0.20; 0.14; 0.12; 0.14; 0.19; 0.13; 0.14 | 2, 15, 93, 106, 200, 223, 263, 342 |
| yijD | asnC, yfeC, sfsB, argP, ttk, aaeR | 6 | 0.17; 0.10; 0.22; 0.16; 0.12; 0.12 | 6, 103, 140, 285, 394, 474 |
| yijE | yciT, ypdC | 2 | 0.12; 0.28 | 34, 54 |
| yijF | melR, nrdR, ttk, sxy, deoR, yjjQ, yncC, ybaQ | 8 | 0.39; 0.18; 0.19; 0.13; 0.11; 0.10; 0.11; 0.13 | 13, 55, 209, 271, 317, 365, 375, 437 |
| yijO | yafN, sxy | 2 | 0.12; 0.13 | 201, 292 |
| yjaA | yhfR, ycjZ, basR, tyrR, lldR, yeiE | 6 | 0.15; 0.10; 0.14; 0.11; 0.14; 0.10 | 15, 30, 31, 145, 155, 179 |
| yjaB | tyrR, iclR, yagI, yafN, cysB, yjjQ | 6 | 0.13; 0.24; 0.13; 0.10; 0.10; 0.10 | 89, 134, 160, 256, 357, 366 |
| yjaG,yjaG-hupA | yeiE, cusR, yeiI | 3 | 0.20; 0.10; 0.32 | 66, 71, 95 |
| yjaH | cusR, tyrR, exuR, fimZ, rutR, nac, ttk, dicC | 8 | 0.14; 0.21; 0.12; 0.32; 0.13; 0.16; 0.12; 0.12 | 25, 31, 62, 66, 111, 238, 402, 442 |
| yjaZ | ydjF, yjjQ, fimZ | 3 | 0.14; 0.41; 0.30 | 20, 31, 79 |
| yjbB | nsrR, ybaQ, deoR, yjjQ, fimZ, sxy, cysB | 7 | 0.32; 0.30; 0.18; 0.15; 0.11; 0.12; 0.10 | 7, 92, 122, 249, 317, 317, 361 |
| yjbD | melR, nsrR, yjjQ, yeiE, cbl, argP | 6 | 0.23; 0.11; 0.23; 0.13; 0.13; 0.19 | 53, 95, 129, 136, 168, 232 |
| yjbD-lysC,lysC | sfsB, yidZ, argP, deoR, dicA | 5 | 0.50; 0.28; 0.25; 0.14; 0.12 | 26, 112, 140, 217, 307 |
| yjbE,yjbE-yjbF-yjbG-yjbH | yjjQ, sfsB, argP | 3 | 0.16; 0.12; 0.10 | 216, 348, 439 |
| yjbF-yjbG-yjbH | ybaQ, sfsB | 2 | 0.16; 0.10 | 339, 400 |
| yjbI | dicC, yjjQ, ypdC | 3 | 0.23; 0.18; 0.11 | 148, 188, 293 |
| yjbJ | rutR, yhjC, cpxR, uxuR, gcvA, argR, deoR, ybaQ | 8 | 0.35; 0.16; 0.13; 0.18; 0.12; 0.12; 0.10; 0.11 | 5, 8, 94, 104, 161, 308, 352, 540 |
| yjbL-yjbM | nrdR, basR, nsrR, yjjQ, yncC, yidZ, ulaR | 7 | 0.34; 0.20; 0.17; 0.39; 0.17; 0.18; 0.12 | 7, 12, 22, 37, 212, 250, 295 |
| yjbQ-yjbR | nac, dicA, iclR | 3 | 0.59; 0.26; 0.20 | 18, 61, 200 |
| yjbS | ycjZ, cadC, yheO, yidZ, yjjQ, argP, sfsB, aaeR, cysB | 9 | 0.10; 0.13; 0.12; 0.32; 0.21; 0.19; 0.15; 0.15; 0.10 | 37, 79, 90, 91, 151, 220, 271, 358, 362 |
| yjbT | argP, yjjQ, yncC, ybaQ | 4 | 0.24; 0.21; 0.14; 0.14 | 159, 161, 288, 401 |
| yjcB | kdgR, deoR, yeiI, ybaQ, dicC | 5 | 0.12; 0.21; 0.20; 0.21; 0.16 | 31, 84, 202, 228, 300 |
| yjcC | kdgR, deoR, relE, yeiI, ybaQ, dicC | 6 | 0.12; 0.21; 0.11; 0.20; 0.21; 0.16 | 31, 83, 128, 202, 229, 299 |
| yjcE | zur, yddM, ulaR, arsR, fimZ, dicA | 6 | 0.14; 0.13; 0.23; 0.18; 0.14; 0.12 | 16, 43, 93, 206, 234, 294 |
| yjcF | gcvA, yjjQ, cynR, argR, nac | 5 | 0.46; 0.25; 0.18; 0.15; 0.13 | 11, 110, 123, 225, 327 |
| yjcO | ulaR | 1 | 0.12 | 311 |
| yjcS | ycjZ, ypdC, ybaQ | 3 | 0.21; 0.65; 0.15 | 3, 5, 361 |
| yjdC | ypdC, yncC | 2 | 0.11; 0.10 | 303, 402 |
| yjdC-dsbD | yeiI, ypdC | 2 | 0.71; 0.12 | 16, 266 |
| yjdF | arsR, lldR, fimZ | 3 | 0.31; 0.17; 0.13 | 63, 100, 240 |
| yjdI-yjdJ | sxy, argP, arsR | 3 | 0.26; 0.16; 0.13 | 92, 290, 333 |
| yjdM | yddM, iscR, gcvA, cynR, dicC | 5 | 0.14; 0.10; 0.14; 0.16; 0.17 | 34, 134, 135, 158, 271 |
| yjdN | nrdR, yjjQ, sfsB | 3 | 0.11; 0.14; 0.13 | 174, 262, 295 |
| yjdP | melR, argP, ybaQ | 3 | 0.24; 0.30; 0.17 | 51, 88, 318 |
| yjeH | glnG, nac, yheO, dicC, ttk | 5 | 0.34; 0.33; 0.10; 0.18; 0.14 | 13, 75, 116, 239, 320 |
| yjeI | rutR, yidZ, dicC, aaeR | 4 | 0.12; 0.18; 0.10; 0.10 | 131, 243, 543, 546 |
| yjeJ | fabR, iclR, ybiH, ydjF, aaeR, cynR, argR, ulaR | 8 | 0.15; 0.54; 0.14; 0.13; 0.36; 0.20; 0.18; 0.10 | 11, 12, 18, 22, 90, 103, 167, 364 |
| yjeM,yjeM-yjeN-yjeO | yegW, basR, matA, aaeR, gadW, argR, yjjQ, cbl, yeiE, nac, ybaQ | 11 | 0.16; 0.11; 0.15; 0.39; 0.16; 0.23; 0.23; 0.15; 0.12; 0.18; 0.21 | 7, 59, 59, 65, 73, 111, 128, 137, 152, 209, 219 |
| yjeN-yjeO | cpxR, mraZ, gadW, sfsB | 4 | 0.18; 0.16; 0.17; 0.24 | 38, 48, 53, 120 |
| yjeT | yfeC, sfsB, ybaQ | 3 | 0.21; 0.11; 0.11 | 20, 364, 521 |
| yjeV | relE, argR, ttk, glnG, yeiE, iclR | 6 | 0.39; 0.39; 0.35; 0.13; 0.12; 0.13 | 16, 47, 67, 84, 153, 408 |
| yjfI-yjfJ | ybiH, marA, cynR, cbl, argP, arsR | 6 | 0.12; 0.11; 0.17; 0.12; 0.17; 0.14 | 33, 41, 136, 189, 264, 322 |
| yjfK-yjfL-yjfM-yjfC | sfsB, purR, melR, yncC, ttk | 5 | 0.87; 0.11; 0.19; 0.16; 0.13 | 3, 18, 76, 221, 366 |
| yjfN | asnC, dgsA, ybaQ, nac | 4 | 0.12; 0.10; 0.22; 0.15 | 15, 152, 208, 265 |
| yjfP | treR, yciT, ypdC, ybhD, yidZ, fimZ, cbl, nac, cysB, ybaQ | 10 | 0.40; 0.11; 0.32; 0.10; 0.20; 0.14; 0.10; 0.15; 0.11; 0.12 | 6, 44, 45, 51, 205, 236, 256, 267, 318, 469 |
| yjfY | iclR, cynR | 2 | 0.26; 0.13 | 113, 223 |
| yjfZ | dicC, ybaQ | 2 | 0.21; 0.20 | 185, 236 |
| yjgA | fimZ, arsR, yddM, tyrR, ybaQ | 5 | 0.41; 0.35; 0.11; 0.15; 0.25 | 36, 43, 70, 72, 148 |
| yjgH | yagI, uxuR, ypdC, cysB, dicC, arsR | 6 | 0.16; 0.15; 0.11; 0.12; 0.15; 0.12 | 125, 148, 301, 304, 314, 382 |
| yjgJ-tabA,yjgJ | betI, ypdC, iclR | 3 | 0.12; 0.19; 0.10 | 26, 118, 506 |
| yjgL | kdgR, relE, nsrR, gcvA, yjjQ | 5 | 0.15; 0.29; 0.14; 0.12; 0.18 | 13, 27, 38, 174, 193 |
| yjgM | nrdR, cysB, cynR, ybaQ | 4 | 0.11; 0.14; 0.13; 0.14 | 147, 222, 227, 394 |
| yjgN | nrdR, cysB, cynR, ybaQ | 4 | 0.11; 0.14; 0.13; 0.14 | 148, 222, 227, 395 |
| yjgR | mraZ, ttk, argR, yagI, ulaR, arsR | 6 | 0.18; 0.35; 0.25; 0.14; 0.13; 0.13 | 35, 65, 94, 143, 260, 353 |
| yjgX | betI, ydjF, ttk | 3 | 0.11; 0.10; 0.27 | 27, 58, 111 |
| yjgZ | betI, rutR, ydjF, ttk | 4 | 0.11; 0.20; 0.10; 0.27 | 28, 37, 59, 110 |
| yjhB-yjhC | exuR, zur, deoR, basR, galS, lldR, cysB, nac, arsR | 9 | 0.27; 0.11; 0.25; 0.10; 0.11; 0.17; 0.17; 0.14; 0.10 | 12, 18, 49, 72, 84, 99, 165, 290, 451 |
| yjhC | ulaR, argP, gcvA, argR, sfsB | 5 | 0.45; 0.43; 0.16; 0.11; 0.11 | 20, 33, 102, 327, 357 |
| yjhD | pdhR, sxy, gcvA, cbl, yeiI, ybaQ | 6 | 0.12; 0.19; 0.11; 0.11; 0.19; 0.18 | 62, 174, 196, 208, 219, 294 |
| yjhE | argP, pdhR, sxy, cbl, ulaR, dicA, ybaQ, yeiI | 8 | 0.49; 0.12; 0.19; 0.11; 0.16; 0.14; 0.18; 0.10 | 26, 62, 173, 207, 211, 250, 294, 440 |
| yjhF | paaX, ybhD, yeiI, iclR | 4 | 0.10; 0.20; 0.33; 0.22 | 7, 11, 92, 160 |
| yjhG-yjhH-yjhI | exuR, aaeR, cbl, mraZ, gcvA, ulaR, iclR | 7 | 0.16; 0.41; 0.20; 0.12; 0.15; 0.22; 0.19 | 31, 58, 74, 97, 113, 118, 220 |
| yjhP | argR, sxy, cysB, ttk, yeiI, aaeR | 6 | 0.43; 0.29; 0.22; 0.16; 0.15; 0.10 | 43, 74, 99, 284, 302, 543 |
| yjhQ-yjhX,yjhP-yjhQ-yjhX | yegW, cadC, melR, aaeR, ttk, sfsB, iclR | 7 | 0.11; 0.14; 0.16; 0.18; 0.13; 0.10; 0.13 | 33, 66, 113, 290, 377, 411, 415 |
| yjhR | galS, racR, melR, fimZ, yncC, iclR, nac, yeiI | 8 | 0.29; 0.17; 0.16; 0.21; 0.15; 0.16; 0.13; 0.12 | 6, 14, 115, 140, 262, 287, 309, 368 |
| yjhU | ygbI, cynR, ypdC, fimZ, yncC, mraZ, dgsA, sfsB, ybaQ | 9 | 0.10; 0.29; 0.26; 0.29; 0.29; 0.10; 0.11; 0.11; 0.13 | 6, 38, 60, 84, 99, 128, 131, 382, 432 |
| yjhV | iscR, treR, sxy | 3 | 0.13; 0.11; 0.13 | 98, 189, 302 |
| yjhZ | galS, racR, melR, fimZ, yncC, iclR, nac, yeiI | 8 | 0.29; 0.17; 0.17; 0.21; 0.15; 0.16; 0.13; 0.12 | 6, 13, 106, 139, 263, 287, 309, 368 |
| yjiA | dgsA, mraZ, envY, yagI, dicC | 5 | 0.32; 0.17; 0.12; 0.14; 0.21 | 10, 39, 99, 147, 199 |
| yjiA-yjiX | mraZ, galS, envY, yagI, dicC | 5 | 0.17; 0.13; 0.12; 0.14; 0.21 | 39, 59, 99, 147, 200 |
| yjiA-yjiX-yjiY,yjiX-yjiY,yjiY | argP, tyrR, gadW, cpxR, nac, deoR, yidZ | 7 | 0.68; 0.19; 0.17; 0.15; 0.32; 0.17; 0.11 | 10, 40, 64, 67, 83, 136, 461 |
| yjiC | cynR, kdgR, yjjQ, dgsA, yfeC, dicC, cbl, nac, ulaR | 9 | 0.40; 0.10; 0.34; 0.12; 0.10; 0.24; 0.14; 0.14; 0.12 | 14, 37, 56, 97, 111, 129, 146, 287, 318 |
| yjiE | cadC, yddM | 2 | 0.21; 0.12 | 23, 58 |
| yjiJ | yjiR, ypdC, dicA | 3 | 0.11; 0.15; 0.12 | 26, 190, 305 |
| yjiK | glnG, yidZ, yafN, sxy, iclR | 5 | 0.13; 0.31; 0.13; 0.18; 0.14 | 90, 94, 154, 183, 370 |
| yjiK-yjiL-yjiM-ytiA,yjiL-yjiM | modE, iscR, ulaR, deoR | 4 | 0.11; 0.19; 0.18; 0.11 | 12, 33, 180, 297 |
| yjiN-mdtM | sxy, ygiT, yidZ, deoR, gcvA, argR, lldR | 7 | 0.45; 0.12; 0.38; 0.18; 0.14; 0.19; 0.10 | 31, 31, 53, 125, 130, 153, 282 |
| yjiP | sxy, ygiT, yidZ, deoR, gcvA, argR, lldR, ybaQ | 8 | 0.45; 0.12; 0.38; 0.18; 0.14; 0.19; 0.10; 0.13 | 30, 31, 53, 125, 129, 153, 283, 426 |
| yjiR | yjiR, yfeC | 2 | 1.00; 0.12 | 1, 70 |
| yjiS | yjiR, treR | 2 | 1.00; 0.11 | 2, 186 |
| yjiT | tyrR, yfeC, cynR, ulaR, yncC, cysB | 6 | 0.28; 0.12; 0.13; 0.15; 0.15; 0.13 | 14, 71, 225, 230, 252, 280 |
| yjiV | galS, yidZ | 2 | 0.17; 0.21 | 24, 198 |
| yjjA-dnaC-dnaT,dnaC-dnaT | arsR, yfeC, trpR, sxy, uxuR, dicC | 6 | 0.52; 0.22; 0.10; 0.20; 0.12; 0.19 | 14, 17, 34, 161, 222, 228 |
| yjjA-dnaC-dnaT-yjjB,dnaC-dnaT-yjjB | yfeC, yeiI | 2 | 0.22; 0.23 | 18, 157 |
| yjjJ | ycjZ, ypdC, yidZ, yncC | 4 | 0.10; 0.14; 0.16; 0.12 | 33, 213, 279, 339 |
| yjjM,lgoT-yjjM | ybhD, dgsA, cynR, iclR | 4 | 0.20; 0.15; 0.16; 0.17 | 12, 50, 160, 272 |
| yjjP | nagC, marA, cynR, ypdC, yncC, arsR | 6 | 0.17; 0.13; 0.27; 0.17; 0.16; 0.14 | 20, 28, 47, 148, 236, 310 |
| yjjQ-bglJ | nagC, marA, cynR, gcvA, cysB, argR, yjjQ | 7 | 0.17; 0.13; 0.27; 0.19; 0.17; 0.12; 0.11 | 21, 29, 46, 73, 159, 321, 337 |
| yjjU-yjjV | ypdC, dicC, ttk | 3 | 0.14; 0.15; 0.11 | 217, 309, 462 |
| yjjW | relE, ttk, treR | 3 | 0.20; 0.27; 0.15 | 43, 115, 126 |
| yjjW-yjjI,yjjI | deoR, sfsB, yagI, ybaQ | 4 | 0.39; 0.30; 0.11; 0.11 | 8, 95, 227, 519 |
| yjjX | fimZ, envY, cpxR | 3 | 0.82; 0.26; 0.12 | 5, 18, 102 |
| yjjY | yciT, galS, treR, ttk, iclR | 5 | 0.11; 0.11; 0.10; 0.13; 0.14 | 51, 87, 226, 360, 380 |
| yjjZ | hcaR, mraZ, nac, yncC, yeiI, iclR | 6 | 0.11; 0.17; 0.28; 0.17; 0.15; 0.15 | 39, 42, 114, 209, 305, 325 |
| yjtD | nagC, cpxR, galS, cynR, cbl, treR | 6 | 0.76; 0.18; 0.11; 0.14; 0.12; 0.10 | 2, 40, 89, 192, 194, 223 |
| ykfC | iclR, nagC, galS, ycjW | 4 | 1.00; 0.49; 0.11; 0.10 | 1, 5, 86, 97 |
| ykfI-yafW-ykfG-yafX-ykfF-ykfB-yafY-ykfH | uxuR, gcvA, yncC | 3 | 0.25; 0.18; 0.16 | 44, 84, 226 |
| ykfI-yafW-ykfG-yafX-ykfF-ykfB-ykfH | uxuR, argR, cysB, yidZ | 4 | 0.25; 0.24; 0.14; 0.11 | 45, 102, 225, 440 |
| ykfI-yafW-ykfG-ykfH | treR, rutR, ypdC, argR, yeiI, dicC | 6 | 0.88; 0.13; 0.17; 0.14; 0.13; 0.13 | 2, 109, 149, 243, 335, 404 |
| ykfJ-prfH | asnC, yncC, arsR, ttk, argR | 5 | 0.16; 0.84; 0.47; 0.48; 0.13 | 10, 14, 21, 21, 303 |
| ykfM | pspF, dicA, yeiI, yidZ, aaeR | 5 | 0.13; 0.31; 0.22; 0.20; 0.16 | 14, 24, 178, 214, 341 |
| ykfN | melR, nagC, sxy, ttk | 4 | 0.48; 0.12; 0.19; 0.18 | 8, 51, 170, 237 |
| ykgA | ybhD, hcaR, yeiI, arsR, aaeR | 5 | 0.97; 0.20; 0.40; 0.16; 0.11 | 3, 14, 62, 241, 497 |
| ykgD | ykgD, dicC, cadC, gcvA, yjjQ, cpxR, arsR, uxuR, ybaQ, aaeR | 10 | 1.00; 0.50; 0.16; 0.20; 0.31; 0.12; 0.20; 0.13; 0.20; 0.13 | 1, 15, 46, 63, 78, 97, 172, 179, 231, 441 |
| ykgE-ykgF-ykgG | nsrR, melR, glnG, lldR, ulaR, fimZ, dicC | 7 | 0.16; 0.25; 0.13; 0.13; 0.13; 0.11; 0.14 | 31, 43, 89, 192, 275, 291, 345 |
| ykgH | ycjW, yeiE, fimZ, yeiI | 4 | 0.14; 0.15; 0.15; 0.11 | 58, 103, 219, 421 |
| ykgJ | cpxR, yafN, arsR, yidZ, argR, yncC | 6 | 0.22; 0.13; 0.14; 0.15; 0.10; 0.11 | 24, 161, 293, 300, 357, 364 |
| ykgL | matA, yjjQ, basR, yncC, yddM, ypdC, nrdR, dicC, yafN, dicA, sfsB, ybaQ | 12 | 1.00; 0.58; 0.13; 0.38; 0.10; 0.18; 0.12; 0.21; 0.10; 0.14; 0.14; 0.15 | 2, 14, 38, 72, 75, 133, 141, 187, 239, 240, 289, 381 |
| ykgM-ykgO | zur, treR, cynR, ycjW, cysB | 5 | 1.00; 0.28; 0.23; 0.11; 0.13 | 1, 26, 71, 87, 283 |
| ykgP | racR, modE, yncC, ttk, nrdR, iscR, tyrR, aaeR, ulaR, argP, yagI, arsR | 12 | 0.16; 0.10; 0.63; 0.42; 0.18; 0.11; 0.11; 0.27; 0.18; 0.19; 0.10; 0.14 | 18, 24, 25, 45, 58, 130, 134, 157, 175, 215, 235, 297 |
| ykgR | uxuR, yeiI, cynR, yheO, matA, glnG, sfsB, dicC, cysB | 9 | 0.26; 0.40; 0.23; 0.12; 0.13; 0.11; 0.20; 0.20; 0.13 | 43, 64, 70, 80, 85, 112, 168, 208, 284 |
| ykgS | yncC, cysB, galS, argR, argP, ulaR | 6 | 0.86; 0.34; 0.11; 0.25; 0.21; 0.15 | 10, 31, 91, 95, 188, 228 |
| ykgV | yafN, arsR, matA, treR, gadW, yidZ, sfsB, yncC | 8 | 0.28; 0.26; 0.11; 0.14; 0.11; 0.21; 0.15; 0.12 | 28, 85, 124, 133, 136, 190, 265, 350 |
| ykiA | yncC, cbl, ulaR, argP | 4 | 0.36; 0.16; 0.21; 0.17 | 79, 121, 122, 257 |
| ykiC | ypdC, yafN, dgsA, nac, uxuR, cysB | 6 | 0.44; 0.14; 0.10; 0.18; 0.12; 0.11 | 15, 145, 150, 198, 223, 328 |
| ykiD | yeiI, yncC, nac, cbl, ulaR, argP | 6 | 0.53; 0.36; 0.28; 0.16; 0.21; 0.17 | 30, 78, 110, 120, 121, 256 |
| ykiE | iclR, fimZ, ycjW, cynR, cadC, dicA, ulaR, uxuR, arsR | 9 | 0.64; 0.35; 0.12; 0.22; 0.13; 0.18; 0.17; 0.12; 0.12 | 5, 51, 71, 77, 85, 151, 202, 210, 388 |
| ylaB | cbl, basR, dicA, cysB, ypdC | 5 | 0.25; 0.11; 0.18; 0.14; 0.11 | 36, 55, 147, 254, 323 |
| ylaC | cysB | 1 | 0.13 | 272 |
| ylbG | matA, cbl, melR | 3 | 0.13; 0.16; 0.15 | 86, 117, 137 |
| ylbI | yciT, gcvA, yheO, yafN, ttk, yidZ | 6 | 0.10; 0.22; 0.11; 0.16; 0.18; 0.14 | 54, 57, 99, 104, 217, 356 |
| ylcH | ypdC, nsrR, nac, matA, cynR, cysB, sxy, arsR, argP, iclR, dicC, aaeR | 12 | 0.35; 0.12; 0.28; 0.10; 0.15; 0.16; 0.17; 0.17; 0.15; 0.14; 0.13; 0.14 | 35, 67, 107, 140, 175, 180, 209, 226, 314, 358, 375, 403 |
| ylcI | agaR, melR, nagC, dicC, ulaR, arsR | 6 | 0.13; 0.20; 0.10; 0.29; 0.18; 0.15 | 5, 65, 76, 77, 168, 281 |
| ylcJ | argP, yfeC, envY, yafN, nac, aaeR, dicC | 7 | 0.57; 0.12; 0.11; 0.14; 0.21; 0.13; 0.11 | 16, 79, 135, 137, 172, 431, 507 |
| yldA | allR, ypdC, dicC, yidZ, aaeR, ybaQ | 6 | 0.15; 0.26; 0.20; 0.19; 0.16; 0.10 | 33, 59, 219, 237, 334, 557 |
| yliE-yliF | cpxR, srlR, yjjQ, ycjW | 4 | 0.22; 0.12; 0.31; 0.11 | 23, 30, 75, 91 |
| yliI | cbl, tyrR, yidZ | 3 | 0.25; 0.15; 0.19 | 39, 77, 221 |
| yljB | ypdC, cysB, iclR, nrdR, mraZ, arsR | 6 | 0.49; 0.26; 0.30; 0.17; 0.14; 0.14 | 10, 61, 64, 67, 71, 312 |
| ymcE-gnsA | matA, ttk, ybaQ | 3 | 0.20; 0.40; 0.24 | 24, 51, 163 |
| ymcF | ybaQ | 1 | 0.24 | 162 |
| ymdA-ymdB-clsC,ymdA-ymdB,ymdA | yheO, yjjQ, pdhR, galS, ybaQ, yhaJ, dicC, nrdR, yeiI | 9 | 0.20; 0.44; 0.13; 0.12; 0.36; 0.11; 0.23; 0.11; 0.10 | 22, 27, 57, 62, 64, 71, 149, 149, 442 |
| ymdB,ymdB-clsC | sfsB, yheO, ulaR, pdhR, galS, ybaQ, yhaJ, yidZ, yeiI | 9 | 0.52; 0.20; 0.39; 0.13; 0.12; 0.36; 0.11; 0.21; 0.10 | 22, 23, 33, 58, 63, 65, 72, 187, 443 |
| ymdE-ycdU | argP, deoR, sxy, ttk | 4 | 0.36; 0.16; 0.15; 0.17 | 56, 154, 241, 254 |
| ymdF | argP, cynR, arsR, ulaR, cysB, nac | 6 | 0.41; 0.18; 0.19; 0.14; 0.11; 0.12 | 36, 124, 186, 244, 325, 351 |
| ymdG | racR, deoR, treR, yncC, iclR, aaeR | 6 | 0.10; 0.15; 0.11; 0.14; 0.15; 0.15 | 52, 174, 196, 273, 327, 349 |
| ymfD-ymfE | hdfR, dicC, ybiH, cadC, yheO, yncC, lldR, arsR, melR, yafN, yjjQ, cysB | 12 | 0.15; 0.40; 0.10; 0.15; 0.13; 0.33; 0.17; 0.25; 0.18; 0.16; 0.15; 0.14 | 9, 38, 45, 61, 72, 86, 93, 96, 98, 116, 240, 256 |
| ymfI | yheO, lexA, trpR, yncC, nrdR, cysB, dicA, dicC | 8 | 0.29; 0.12; 0.10; 0.41; 0.11; 0.14; 0.12; 0.10 | 13, 25, 37, 63, 152, 237, 285, 522 |
| ymfJ | yagI, glnG, ycjZ, relE, nsrR, ttk | 6 | 0.41; 0.22; 0.11; 0.18; 0.11; 0.11 | 11, 27, 29, 52, 89, 449 |
| ymgA-ariR | ycgE, yhfR, zur, dicC, melR, dicA, matA, sfsB, ulaR, ybaQ | 10 | 1.00; 0.17; 0.17; 0.44; 0.18; 0.22; 0.12; 0.19; 0.16; 0.15 | 3, 8, 12, 23, 90, 104, 111, 176, 210, 367 |
| ymgC | cbl, modE, envY, yeiE, yeiI, iclR | 6 | 0.36; 0.10; 0.15; 0.13; 0.25; 0.16 | 18, 27, 74, 127, 141, 299 |
| ymgD-ymgG | yjjQ, cadC, cpxR, argR, tyrR, deoR, dicA, yidZ | 8 | 0.70; 0.18; 0.14; 0.21; 0.11; 0.15; 0.13; 0.10 | 8, 33, 72, 120, 150, 191, 264, 492 |
| ymgE | dicA, yjjQ, uxuR, aaeR | 4 | 0.20; 0.17; 0.12; 0.20 | 117, 205, 213, 254 |
| ymgF | envY, yafN, yheO, galS, iclR, ulaR, yeiE, fimZ, arsR, yeiI, argP | 11 | 0.21; 0.26; 0.15; 0.13; 0.29; 0.23; 0.15; 0.21; 0.16; 0.17; 0.11 | 30, 35, 46, 60, 68, 92, 105, 138, 255, 266, 405 |
| ymgH | yjjQ, cadC, argR, nrdR, argP, tyrR | 6 | 0.70; 0.18; 0.21; 0.12; 0.24; 0.11 | 9, 35, 121, 131, 152, 152 |
| ymgI | yjjQ, cadC, cpxR, argR, nrdR, tyrR, dicA | 7 | 0.70; 0.18; 0.14; 0.21; 0.12; 0.11; 0.13 | 10, 36, 74, 119, 131, 149, 263 |
| ymgJ | yjjQ, cadC, cpxR, argR, tyrR, deoR, dicA, yidZ | 8 | 0.70; 0.18; 0.14; 0.21; 0.11; 0.15; 0.13; 0.10 | 7, 33, 72, 122, 150, 191, 262, 492 |
| ymgK | basR, cynR, yafN, dicA, yjjQ, dicC | 6 | 0.10; 0.17; 0.13; 0.17; 0.17; 0.13 | 74, 131, 156, 170, 212, 412 |
| ymgL | hcaR, yhfR, basR, matA, cynR, dicA, yjjQ, yeiI, nac | 9 | 0.12; 0.12; 0.10; 0.12; 0.17; 0.17; 0.17; 0.14; 0.11 | 32, 34, 73, 107, 130, 171, 211, 324, 382 |
| ymgM | yafN, nrdR, rutR, deoR | 4 | 0.23; 0.15; 0.12; 0.13 | 45, 91, 132, 236 |
| ymiA-yciX | exuR, yncC, yjjQ, dicA, aaeR | 5 | 0.15; 0.46; 0.20; 0.14; 0.16 | 35, 52, 169, 253, 329 |
| ymiB | cadC, yagI, yjjQ | 3 | 0.10; 0.11; 0.14 | 116, 207, 254 |
| ymiD | cpxR, nac, nrdR, relE, melR, yncC, dicC, iclR | 8 | 0.18; 0.40; 0.18; 0.14; 0.10; 0.13; 0.13; 0.12 | 34, 46, 52, 83, 231, 299, 379, 449 |
| ynaE | basR, cadC, dicC, yjjQ, arsR, cbl, ulaR, sfsB, dicA, fimZ, nac, iclR | 12 | 0.14; 0.18; 0.35; 0.35; 0.27; 0.19; 0.21; 0.22; 0.17; 0.18; 0.15; 0.10 | 33, 39, 48, 51, 76, 89, 132, 141, 159, 163, 271, 484 |
| ynaI | yagI, iclR, dicC | 3 | 0.19; 0.14; 0.13 | 87, 355, 377 |
| ynaJ | yegW, ycjW, iclR, uxuR, cysB | 5 | 0.10; 0.14; 0.32; 0.16; 0.14 | 37, 52, 55, 122, 235 |
| ynaK-ydaY | galS, exuR, ybaQ, yncC, dicC | 5 | 0.27; 0.23; 0.29; 0.20; 0.18 | 8, 18, 104, 157, 253 |
| ynaL | pepA, yegW, dicC, cynR | 4 | 0.12; 0.10; 0.24; 0.14 | 18, 42, 115, 178 |
| ynaM | dicC, yjjQ, ulaR, allR, arsR, argP, cbl, dgsA, dicA, fimZ, nac, iclR | 12 | 0.35; 0.35; 0.32; 0.12; 0.27; 0.30; 0.19; 0.11; 0.17; 0.18; 0.12; 0.10 | 49, 50, 54, 58, 78, 86, 88, 114, 160, 163, 343, 485 |
| ynaN | ybhD, treR | 2 | 0.11; 0.19 | 44, 73 |
| ynbA-ynbB-ynbC-ynbD | mraZ, yfeC, gcvA, aaeR, ulaR, yncC | 6 | 0.17; 0.14; 0.17; 0.27; 0.17; 0.15 | 45, 63, 88, 161, 189, 267 |
| ynbG | cynR, dgsA, nrdR, rutR, gadW, ypdC, nac, aaeR, argP | 9 | 0.40; 0.13; 0.14; 0.13; 0.12; 0.19; 0.24; 0.24; 0.11 | 9, 85, 100, 104, 109, 120, 149, 190, 416 |
| yncC | srlR, dicA, cysB, aaeR, iclR, deoR, ttk | 7 | 0.18; 0.24; 0.22; 0.25; 0.20; 0.10; 0.12 | 10, 78, 92, 180, 199, 361, 416 |
| yncD | asnC, fimZ, sfsB, ypdC, sxy, yidZ | 6 | 0.11; 0.28; 0.17; 0.12; 0.12; 0.13 | 17, 92, 200, 252, 321, 372 |
| yncE | asnC, fimZ, sfsB, ypdC, sxy, yidZ | 6 | 0.11; 0.28; 0.17; 0.12; 0.12; 0.13 | 17, 91, 201, 253, 322, 372 |
| yncG | cysB, galS, dicA, ttk, iclR, aaeR, gadW, ybaQ | 8 | 0.53; 0.12; 0.25; 0.31; 0.29; 0.31; 0.12; 0.19 | 10, 66, 75, 77, 78, 121, 124, 253 |
| yncH | sfsB, argP, aaeR, nac, argR, iclR | 6 | 0.38; 0.31; 0.20; 0.12; 0.10; 0.12 | 55, 79, 262, 340, 361, 431 |
| yncI | yafN, arsR, aaeR, lldR, yidZ | 5 | 0.22; 0.27; 0.23; 0.12; 0.15 | 53, 82, 196, 220, 305 |
| yncJ | lldR, argR, ybaQ | 3 | 0.13; 0.15; 0.12 | 175, 231, 486 |
| yncL | fimZ, ybhD, yhaJ, argP, ulaR, aaeR | 6 | 0.69; 0.13; 0.10; 0.27; 0.12; 0.12 | 9, 29, 83, 116, 315, 476 |
| yncO | yafN, yeiI, arsR, cbl, lldR, yidZ | 6 | 0.22; 0.42; 0.27; 0.19; 0.12; 0.15 | 53, 58, 81, 82, 219, 306 |
| yncP | yagI, gadW, yidZ | 3 | 0.30; 0.16; 0.11 | 30, 71, 472 |
| yneE | matA, yagI, yeiI | 3 | 0.21; 0.21; 0.10 | 23, 66, 462 |
| yneG-glsB | ttk, rutR, arsR | 3 | 0.86; 0.17; 0.14 | 3, 47, 318 |
| yneG-glsB-sad,sad | ydjF, aaeR, fimZ, yagI | 4 | 0.13; 0.45; 0.19; 0.12 | 23, 43, 154, 198 |
| yneJ | exuR, pdhR, ydjF, aaeR, fimZ, yagI | 6 | 0.29; 0.21; 0.13; 0.45; 0.19; 0.13 | 10, 15, 24, 42, 153, 162 |
| yneK | treR, nrdR, yidZ, ulaR, cysB | 5 | 0.36; 0.21; 0.23; 0.12; 0.11 | 13, 32, 163, 297, 343 |
| yneL | yhfR, cbl, yfeC, yjjQ, cynR, ybaQ, dicC | 7 | 0.12; 0.23; 0.13; 0.25; 0.11; 0.12; 0.10 | 31, 48, 67, 111, 270, 473, 528 |
| yneL-hipA-hipB,hipA-hipB | yncC, cbl, lldR, arsR | 4 | 0.24; 0.13; 0.10; 0.14 | 132, 187, 269, 316 |
| yneM | argP, exuR, matA, arsR | 4 | 0.74; 0.13; 0.16; 0.18 | 8, 50, 54, 198 |
| yneO | cbl, cadC, dicA, marA, yjjQ, yfeC, fimZ, cynR, dicC, iclR | 10 | 0.52; 0.24; 0.31; 0.12; 0.38; 0.12; 0.21; 0.14; 0.20; 0.14 | 4, 21, 28, 34, 43, 81, 137, 194, 214, 388 |
| yneP | iscR, cbl, yidZ, fimZ, argR, dicC, aaeR | 7 | 0.25; 0.16; 0.22; 0.15; 0.11; 0.11; 0.11 | 27, 126, 170, 206, 349, 502, 508 |
| ynfA | nac, uxuR, cysB, ybaQ, fimZ, ulaR, aaeR | 7 | 0.31; 0.17; 0.19; 0.23; 0.16; 0.12; 0.14 | 85, 117, 142, 182, 186, 292, 414 |
| ynfB-speG | nac, cysB, fimZ, ypdC, ulaR | 5 | 0.31; 0.19; 0.16; 0.14; 0.13 | 86, 143, 186, 208, 265 |
| ynfC | cadC, envY, yncC, yjjQ, cysB | 5 | 0.14; 0.13; 0.31; 0.22; 0.15 | 67, 89, 94, 140, 206 |
| ynfD | cadC, envY, yncC, yjjQ, cysB | 5 | 0.14; 0.13; 0.31; 0.22; 0.14 | 67, 90, 96, 141, 245 |
| ynfE-ynfF-ynfG-ynfH-dmsD | modE, nrdR, glnG, yncC, cysB, cynR, ttk | 7 | 0.11; 0.15; 0.13; 0.31; 0.15; 0.12; 0.16 | 14, 82, 88, 95, 205, 246, 280 |
| ynfK | cadC, deoR, galS, ttk, dgsA, iclR, ybaQ | 7 | 0.31; 0.36; 0.14; 0.44; 0.13; 0.27; 0.15 | 10, 15, 36, 37, 91, 108, 372 |
| ynfL | srlR, yidZ, cynR, dgsA, dicC | 5 | 0.15; 0.35; 0.21; 0.10; 0.18 | 21, 74, 95, 147, 248 |
| ynfM | srlR, cynR, dgsA, dicC, fimZ | 5 | 0.15; 0.21; 0.10; 0.18; 0.11 | 22, 96, 147, 249, 300 |
| ynfN | yciT, ulaR, sfsB, argR, iclR | 5 | 0.14; 0.36; 0.25; 0.17; 0.15 | 21, 45, 117, 201, 344 |
| ynfP | yoeB, glnG, ygiT | 3 | 0.11; 0.20; 0.11 | 5, 32, 42 |
| ynfQ | yciT, basR, ulaR, cpxR, pdhR, sfsB, nac, iclR | 8 | 0.14; 0.12; 0.36; 0.16; 0.12; 0.25; 0.15; 0.15 | 23, 42, 46, 51, 69, 118, 262, 344 |
| ynfR | yciT, ulaR, cpxR, pdhR, sfsB, nac, iclR | 7 | 0.14; 0.36; 0.16; 0.12; 0.25; 0.15; 0.15 | 21, 46, 51, 71, 116, 264, 346 |
| ynfS | iscR | 1 | 0.18 | 36 |
| ynfU | sfsB, glnG, gcvA, nac, yheO, iscR, yagI, deoR, lldR, ypdC | 10 | 0.45; 0.19; 0.26; 0.39; 0.14; 0.15; 0.12; 0.15; 0.12; 0.12 | 34, 36, 44, 50, 54, 66, 184, 195, 205, 263 |
| ynhF | galR, pepA, pdhR | 3 | 0.15; 0.12; 0.10 | 9, 13, 92 |
| yniA | yagI, iscR, sxy, glnG, yeiE, arsR, cysB, yidZ, ybaQ | 9 | 0.37; 0.15; 0.25; 0.10; 0.11; 0.18; 0.14; 0.13; 0.12 | 15, 70, 103, 140, 169, 207, 248, 394, 483 |
| yniB | tyrR, arsR | 2 | 0.14; 0.21 | 88, 147 |
| yniC | tyrR, arsR | 2 | 0.14; 0.21 | 87, 146 |
| yniD | exuR, ybaQ, uxuR, dicA, nrdR, yncC, deoR, argR | 8 | 0.25; 0.43; 0.19; 0.21; 0.12; 0.17; 0.11; 0.11 | 14, 40, 83, 107, 138, 207, 320, 342 |
| ynjA | matA, cbl, yeiI, aaeR | 4 | 0.18; 0.19; 0.27; 0.16 | 42, 85, 132, 330 |
| ynjF | matA, melR, nac, fimZ, ttk, argP, arsR | 7 | 0.31; 0.36; 0.29; 0.20; 0.23; 0.16; 0.13 | 8, 17, 103, 148, 148, 294, 346 |
| ynjH | cbl, gadW, nac, yagI, dicC, yjjQ, cysB, sfsB | 8 | 1.00; 0.25; 0.33; 0.17; 0.22; 0.17; 0.12; 0.12 | 2, 14, 76, 115, 158, 215, 289, 323 |
| ynjI | betI, dicA, yncC, yeiI, aaeR | 5 | 0.19; 0.23; 0.15; 0.15; 0.14 | 4, 90, 264, 303, 401 |
| yoaB,yoaB-yoaC | cpxR | 1 | 0.27 | 12 |
| yoaC | yeiE, melR, argP, ulaR, yjjQ, lldR, aaeR | 7 | 0.36; 0.17; 0.28; 0.19; 0.20; 0.12; 0.11 | 15, 105, 106, 151, 167, 210, 498 |
| yoaD | fimZ, gadW, dgsA | 3 | 0.38; 0.18; 0.10 | 46, 47, 145 |
| yoaE | dgsA, betI, gadW, nsrR, tyrR, aaeR | 6 | 0.46; 0.10; 0.15; 0.11; 0.13; 0.14 | 6, 44, 80, 92, 110, 424 |
| yoaF | cadC, exuR, gadW, ybhD, sfsB | 5 | 0.27; 0.24; 0.21; 0.10; 0.12 | 14, 16, 34, 49, 328 |
| yoaG-yeaR | nsrR, lldR | 2 | 0.11; 0.13 | 105, 185 |
| yoaH | arsR, yeiI, aaeR, dicC, dicA | 5 | 0.47; 0.69; 0.53; 0.17; 0.11 | 20, 20, 26, 267, 329 |
| yoaI | ybcM, aaeR, dicC, ybaQ | 4 | 0.13; 0.39; 0.24; 0.11 | 12, 67, 134, 509 |
| yoaL | cusR, dgsA, betI, gadW, nsrR, tyrR, aaeR | 7 | 0.49; 0.46; 0.10; 0.15; 0.11; 0.13; 0.14 | 4, 4, 42, 81, 90, 108, 422 |
| yoaM | cusR, uxuR | 2 | 0.16; 0.18 | 19, 102 |
| yobB-exoX | nac, cadC, dicA, argP, ulaR, gcvA, cysB, yeiI, dicC | 9 | 0.37; 0.12; 0.21; 0.25; 0.19; 0.12; 0.16; 0.18; 0.14 | 63, 91, 109, 142, 152, 172, 177, 252, 364 |
| yobD | rutR, dicA | 2 | 0.18; 0.12 | 45, 315 |
| yobH | lldR, ydjF, cbl, fimZ, sfsB, glnG, cysB | 7 | 0.28; 0.11; 0.23; 0.35; 0.31; 0.11; 0.13 | 26, 41, 44, 54, 93, 109, 262 |
| yobI | yfeC, lldR, ulaR, sxy, aaeR, arsR | 6 | 0.26; 0.29; 0.35; 0.26; 0.17; 0.14 | 10, 24, 49, 90, 314, 324 |
| yodB | yncC, argR, aaeR | 3 | 0.18; 0.11; 0.12 | 193, 348, 480 |
| yodC | glpR, yhaJ, aaeR, fimZ | 4 | 0.12; 0.21; 0.34; 0.14 | 14, 21, 96, 226 |
| yodD | dicC | 1 | 0.21 | 190 |
| yodE | yeiE, gadW, gcvA, sfsB, arsR, cynR, ttk, ybaQ | 8 | 0.61; 0.29; 0.11; 0.18; 0.15; 0.11; 0.12; 0.11 | 6, 11, 193, 195, 269, 291, 421, 507 |
| yoeA | nagC, yidZ, ypdC, iclR, yafN, treR, argR, argP, dicC | 9 | 0.12; 0.28; 0.19; 0.21; 0.12; 0.10; 0.14; 0.16; 0.11 | 52, 117, 126, 181, 192, 214, 268, 291, 510 |
| yoeF | yagI, ypdC, ybaQ, ulaR, yjjQ, sfsB, aaeR | 7 | 0.28; 0.22; 0.17; 0.12; 0.11; 0.10; 0.14 | 41, 82, 327, 329, 345, 406, 419 |
| yohC | ygiT, allR | 2 | 0.12; 0.11 | 30, 73 |
| yohD | ygiT, allR, ypdC | 3 | 0.12; 0.11; 0.21 | 29, 74, 95 |
| yohF | yegW, exuR, pdhR, uxuR, ybaQ, aaeR | 6 | 0.11; 0.15; 0.14; 0.11; 0.16; 0.14 | 29, 38, 43, 266, 338, 407 |
| yohH | yncC, yjjQ, ttk, aaeR, cysB | 5 | 0.27; 0.23; 0.24; 0.21; 0.13 | 107, 126, 138, 244, 279 |
| yohJ-yohK,yohJ-yohK-cdd | yeiE, yjiR, ypdC | 3 | 0.35; 0.12; 0.16 | 16, 23, 172 |
| yohO | cysB, yidZ | 2 | 0.36; 0.25 | 28, 133 |
| yohP | yncC, yjjQ, ttk, aaeR, cysB | 5 | 0.27; 0.23; 0.24; 0.21; 0.13 | 106, 126, 139, 244, 278 |
| yojI | pspF, melR, mraZ, aaeR | 4 | 0.15; 0.18; 0.11; 0.10 | 11, 96, 119, 531 |
| yojO | yfeC, melR, mraZ, cpxR, ttk, nac | 6 | 0.21; 0.19; 0.14; 0.12; 0.24; 0.16 | 25, 77, 81, 119, 144, 242 |
| ypaA | sfsB | 1 | 0.16 | 250 |
| ypaB | nrdR, mraZ, melR, matA, nsrR, dicC, iclR | 7 | 0.63; 0.17; 0.18; 0.12; 0.11; 0.23; 0.15 | 3, 38, 89, 103, 107, 146, 331 |
| ypdA-ypdB-ypdC | iscR, ypdC, argP, ulaR, cynR, fimZ, dicA | 7 | 0.40; 0.31; 0.31; 0.23; 0.15; 0.12; 0.13 | 8, 48, 84, 102, 169, 268, 271 |
| ypdB-ypdC | yafN, sxy, nac | 3 | 0.49; 0.28; 0.10 | 7, 79, 413 |
| ypdI | marA, yagI, allR | 3 | 0.16; 0.20; 0.10 | 12, 76, 98 |
| ypdK | iscR, glpR, gadW, deoR, sfsB | 5 | 0.41; 0.13; 0.12; 0.19; 0.11 | 5, 11, 115, 117, 358 |
| ypeC | marA, dgsA, ypdC | 3 | 0.31; 0.11; 0.17 | 3, 136, 153 |
| ypfG | agaR, yheO, relE, rutR | 4 | 0.10; 0.19; 0.11; 0.11 | 14, 27, 123, 136 |
| ypfH | relE, lldR, ttk, yidZ | 4 | 0.18; 0.14; 0.16; 0.13 | 58, 142, 270, 382 |
| ypfH-tmcA | yjjQ, mraZ, ybaQ | 3 | 0.31; 0.13; 0.15 | 76, 87, 356 |
| ypfH-tmcA-ypfJ,tmcA-ypfJ,ypfJ | yhjC, envY, arsR, nrdR | 4 | 0.13; 0.15; 0.23; 0.11 | 17, 71, 132, 154 |
| ypfJ-purC,purC | purR, ybaQ, yeiI | 3 | 1.00; 0.23; 0.14 | 1, 185, 323 |
| ypfJ-purC-bamC,purC-bamC,bamC | yeiE, uxuR | 2 | 0.16; 0.11 | 95, 255 |
| ypfJ-purC-bamC-dapA,bamC-dapA | yfeC, yafN | 2 | 0.12; 0.11 | 82, 221 |
| ypfM | ydjF, cbl, aaeR, cynR, iclR | 5 | 0.13; 0.26; 0.20; 0.10; 0.10 | 27, 35, 267, 301, 495 |
| yphA | yncC, mraZ, glnG, argP | 4 | 0.30; 0.11; 0.10; 0.11 | 98, 121, 142, 414 |
| yphB-yphC | matA, iclR, aaeR, sfsB | 4 | 0.28; 0.22; 0.21; 0.13 | 14, 159, 238, 313 |
| yphD-yphE-yphF | racR, matA, hdfR, yhaJ, cynR, fimZ, uxuR, nac, cysB, argP, aaeR | 11 | 0.22; 0.26; 0.10; 0.10; 0.16; 0.18; 0.13; 0.16; 0.14; 0.12; 0.15 | 6, 15, 16, 84, 155, 165, 189, 241, 253, 360, 365 |
| yphG | argR, aaeR, yeiI, argP | 4 | 0.32; 0.38; 0.15; 0.12 | 64, 72, 296, 379 |
| yphH | argR, aaeR, yeiI, argP | 4 | 0.32; 0.38; 0.15; 0.12 | 65, 73, 296, 379 |
| ypjA | matA, cadC, glnG, cysB, cynR, yncC, arsR | 7 | 0.12; 0.10; 0.10; 0.14; 0.11; 0.14; 0.11 | 90, 130, 135, 252, 289, 289, 442 |
| ypjB | dgsA, matA, gadW, melR, cynR, arsR, dicC, ttk | 8 | 0.14; 0.13; 0.11; 0.12; 0.10; 0.12; 0.13; 0.10 | 62, 77, 144, 187, 307, 385, 410, 483 |
| ypjC | dgsA, dicC, matA, aaeR, ttk | 5 | 0.20; 0.43; 0.13; 0.15; 0.11 | 25, 26, 76, 380, 471 |
| ypjI | iscR, aaeR, yncC, lldR, ulaR, ttk | 6 | 0.14; 0.21; 0.15; 0.10; 0.10; 0.11 | 80, 239, 269, 270, 366, 459 |
| yqaE,ygaU-yqaE | ebgR, fimZ, yjjQ, aaeR, cynR, dicA, nac | 7 | 0.14; 0.32; 0.24; 0.21; 0.11; 0.12; 0.11 | 9, 69, 114, 246, 272, 302, 376 |
| yqcA | mraZ, deoR, cbl, yeiI | 4 | 0.14; 0.18; 0.13; 0.12 | 74, 128, 184, 379 |
| yqcA-truC-yqcC | lldR, ulaR, fimZ, ycjW, yjjQ, tyrR, yafN, treR, yeiI | 9 | 0.28; 0.30; 0.31; 0.11; 0.23; 0.11; 0.12; 0.11; 0.14 | 31, 56, 74, 92, 137, 148, 196, 200, 325 |
| yqcE-ygcE | melR, deoR, ulaR, iscR, cysB, yidZ, dicC, iclR | 8 | 1.00; 0.25; 0.25; 0.12; 0.18; 0.13; 0.12; 0.10 | 1, 51, 81, 111, 152, 398, 458, 480 |
| yqcG | nac, yafN, cysB, dicA, yidZ, dicC, arsR | 7 | 0.32; 0.18; 0.19; 0.12; 0.14; 0.14; 0.10 | 79, 82, 137, 296, 333, 351, 456 |
| yqeA | yjiR, yagI, yidZ, iclR | 4 | 0.37; 0.10; 0.15; 0.14 | 3, 245, 313, 384 |
| yqeB | tyrR, melR, fimZ, deoR | 4 | 0.19; 0.16; 0.16; 0.13 | 39, 114, 190, 244 |
| yqeC | yfeT, deoR, yagI, dicC, cpxR | 5 | 0.13; 0.32; 0.29; 0.30; 0.11 | 4, 25, 36, 69, 125 |
| yqeF | aaeR, ulaR, dicA, iclR, ttk, arsR, argP, yidZ | 8 | 0.63; 0.22; 0.14; 0.16; 0.14; 0.12; 0.12; 0.11 | 19, 116, 231, 289, 355, 373, 394, 470 |
| yqeG | aaeR, yidZ, ulaR, dicA, iclR, ttk, arsR, argP | 8 | 0.63; 0.37; 0.22; 0.14; 0.16; 0.14; 0.12; 0.12 | 18, 65, 117, 231, 289, 355, 374, 395 |
| yqeH | yciT, yfeC, yheO, cynR, yjjQ, nsrR, cbl, yncC | 8 | 0.19; 0.18; 0.14; 0.24; 0.28; 0.11; 0.12; 0.15 | 11, 29, 51, 58, 87, 102, 190, 257 |
| yqeI-yqeJ | ompR, nagC, yagI, dicA, sfsB | 5 | 0.15; 0.10; 0.20; 0.20; 0.17 | 10, 69, 69, 114, 209 |
| yqeK | argR, trpR, arsR, yeiE, yjjQ, deoR, cynR, cbl, ulaR, argP | 10 | 0.93; 0.14; 0.25; 0.11; 0.18; 0.15; 0.14; 0.11; 0.14; 0.18 | 4, 15, 103, 163, 184, 187, 189, 223, 242, 243 |
| yqeL | argR, asnC, modE, aaeR, arsR, nsrR, yafN, yjjQ | 8 | 0.93; 0.13; 0.11; 0.43; 0.25; 0.10; 0.15; 0.18 | 5, 13, 20, 50, 103, 109, 122, 185 |
| yqfA | fabR, dicA, treR, relE, melR, sfsB, dicC, yidZ | 8 | 0.69; 0.33; 0.25; 0.11; 0.16; 0.23; 0.18; 0.16 | 4, 21, 38, 118, 121, 134, 254, 292 |
| yqfB | allR, galS, sfsB, arsR, yidZ | 5 | 0.11; 0.11; 0.19; 0.14; 0.16 | 67, 93, 169, 290, 290 |
| yqfE | yncC, ybaQ | 2 | 0.11; 0.15 | 381, 382 |
| yqfG | yhjC, nrdR, iclR | 3 | 0.16; 0.27; 0.27 | 7, 16, 100 |
| yqfH | ulaR, cynR, ttk | 3 | 0.21; 0.16; 0.19 | 128, 150, 201 |
| yqfI | gcvA, cynR, basR, nac, cbl, deoR, yeiE, fimZ, dicA | 9 | 0.96; 0.30; 0.12; 0.38; 0.20; 0.19; 0.11; 0.13; 0.12 | 2, 36, 46, 57, 72, 118, 174, 238, 308 |
| yqgA-pheV,yqgA | yciT, ypdC, argP | 3 | 0.11; 0.12; 0.15 | 39, 285, 297 |
| yqgC | yhaJ, ttk, aaeR | 3 | 0.14; 0.18; 0.15 | 44, 235, 374 |
| yqgD | cpxR, ydjF, yeiI, cynR, ybaQ, uxuR, dicC | 7 | 0.21; 0.11; 0.23; 0.13; 0.21; 0.11; 0.12 | 27, 37, 161, 215, 226, 235, 449 |
| yqgE-yqgF | gadW, argP | 2 | 0.10; 0.18 | 167, 242 |
| yqgG | cpxR, ydjF, cynR, argR, aaeR, dicC | 6 | 0.21; 0.11; 0.13; 0.12; 0.15; 0.12 | 25, 39, 214, 316, 377, 447 |
| yqgH | yciT, argP | 2 | 0.11; 0.15 | 38, 297 |
| yqhA | ycjW, nac, yidZ, aaeR | 4 | 0.16; 0.27; 0.20; 0.11 | 44, 117, 210, 509 |
| yqhC | fimZ, gadW, tyrR, ulaR, ypdC, argR | 6 | 0.30; 0.10; 0.10; 0.16; 0.13; 0.11 | 81, 170, 174, 206, 239, 353 |
| yqhD-dkgA | fimZ, gadW, tyrR, ulaR, ypdC, argR, cysB | 7 | 0.30; 0.10; 0.10; 0.16; 0.13; 0.11; 0.10 | 80, 170, 173, 205, 240, 354, 366 |
| yqhG | envY, melR, yddM, aaeR, yidZ | 5 | 0.30; 0.27; 0.13; 0.19; 0.13 | 11, 30, 40, 271, 396 |
| yqhH | argP | 1 | 0.20 | 210 |
| yqhI | gadW, cadC, cbl | 3 | 0.17; 0.12; 0.14 | 61, 103, 155 |
| yqhJ | yddM, deoR, dicA, sfsB, aaeR | 5 | 0.19; 0.15; 0.12; 0.11; 0.10 | 16, 197, 295, 354, 536 |
| yqiA-cpdA-yqiB,parE-yqiA-cpdA-yqiB | ybcM | 1 | 0.11 | 22 |
| yqiA-cpdA-yqiB-nudF,cpdA-yqiB-nudF,parE-yqiA-cpdA-yqiB-nudF | argP, marA, aaeR, gcvA, ypdC, sfsB | 6 | 0.54; 0.14; 0.34; 0.12; 0.10; 0.12 | 21, 21, 100, 182, 330, 337 |
| yqiC,yqiC-ygiL | iscR, yjjQ, ttk, fimZ, dicC | 5 | 0.38; 0.31; 0.21; 0.12; 0.15 | 10, 81, 181, 285, 312 |
| yqiD | yncC, arsR, ulaR | 3 | 0.41; 0.31; 0.18 | 62, 66, 166 |
| yqiG | ycjZ, iscR, argP, deoR, nac | 5 | 0.11; 0.18; 0.25; 0.16; 0.10 | 28, 41, 145, 161, 399 |
| yqiJ-yqiK | yhaJ, tyrR, cbl, deoR, yjjQ, yncC, aaeR | 7 | 0.10; 0.11; 0.13; 0.13; 0.15; 0.11; 0.14 | 76, 138, 165, 235, 245, 390, 393 |
| yqiM | lldR, yeiI, cpxR, iclR, ulaR, ybaQ | 6 | 0.23; 0.41; 0.12; 0.22; 0.10; 0.10 | 51, 60, 99, 153, 363, 551 |
| yqjA-mzrA,yqjA-mzrA-yqjC-yqjD | lldR, yeiI, allR, cpxR, iclR, ulaR, ybaQ | 7 | 0.23; 0.41; 0.10; 0.12; 0.22; 0.10; 0.10 | 50, 61, 94, 98, 153, 362, 550 |
| yqjC-yqjD-yqjE-yqjK | gcvA, ybaQ, cysB | 3 | 0.26; 0.21; 0.14 | 46, 227, 232 |
| yqjD-yqjE-yqjK | ttk, cysB | 2 | 0.54; 0.14 | 13, 233 |
| yqjE-yqjK | ttk, dicA, iclR | 3 | 0.54; 0.15; 0.19 | 14, 215, 219 |
| yqjF | yhaJ, yheO, ulaR, envY, melR | 5 | 1.00; 0.33; 0.23; 0.12; 0.12 | 1, 6, 96, 106, 179 |
| yqjG | yhaJ, envY, treR, yidZ, melR, ttk | 6 | 1.00; 0.12; 0.15; 0.23; 0.12; 0.20 | 2, 105, 115, 162, 178, 190 |
| yqjI | yqjI, nsrR, gcvA, iclR, yncC, sfsB, aaeR | 7 | 1.00; 0.14; 0.12; 0.21; 0.20; 0.12; 0.16 | 1, 41, 157, 169, 172, 321, 335 |
| yraH | argR, sfsB, cynR, dicA, sxy, yidZ, ulaR | 7 | 0.78; 0.66; 0.13; 0.13; 0.13; 0.15; 0.10 | 8, 12, 219, 273, 286, 301, 360 |
| yraI-yraJ-yraK | ybcM, yegW, melR, nrdR, gadW, dicC, iclR | 7 | 0.11; 0.11; 0.20; 0.12; 0.11; 0.22; 0.18 | 23, 32, 72, 126, 157, 171, 262 |
| yraN-diaA-yraP,yraN | aaeR | 1 | 0.26 | 169 |
| yraP | arsR, ybaQ, cbl, yjjQ | 4 | 0.24; 0.20; 0.10; 0.14 | 110, 233, 245, 267 |
| yraQ | argR, argP | 2 | 0.31; 0.27 | 67, 115 |
| yraR,yraQ-yraR | gadW, lldR | 2 | 0.10; 0.13 | 158, 186 |
| yrbG-kdsD-kdsC-lptC-lptA-lptB,yrbG-kdsD,yrbG-kdsD-kdsC | basR, ulaR | 2 | 0.28; 0.19 | 6, 155 |
| yrbL | basR, marA, yhaJ, yjjQ, yeiI | 5 | 0.79; 0.18; 0.10; 0.24; 0.17 | 2, 8, 85, 118, 269 |
| yrbL3p | yegW | 1 | 0.11 | 34 |
| yrdA | gadW, ybiH, deoR, ypdC, dicC | 5 | 0.70; 0.13; 0.13; 0.10; 0.11 | 3, 29, 240, 326, 496 |
| yrdB-aroE-tsaC-yrdD | ybiH, ydjF, yafN, tyrR, envY, ybaQ, ttk | 7 | 0.17; 0.10; 0.16; 0.12; 0.11; 0.21; 0.15 | 4, 60, 101, 121, 122, 225, 288 |
| yrdB-aroE-tsaC-yrdD-smg,tsaC-yrdD-smg,smg | ydjF, tyrR, yeiE, sxy, iclR | 5 | 0.10; 0.12; 0.13; 0.14; 0.12 | 61, 122, 130, 266, 441 |
| yrfF | fimZ, arsR, iclR | 3 | 0.50; 0.34; 0.19 | 25, 52, 232 |
| yrfG-hslR,yrfG-hslR-hslO | ydjF, yncC | 2 | 0.10; 0.40 | 57, 67 |
| yrhA | dicC, ybhD, racR, rutR, dicA, nrdR, fimZ, argR, cbl, yafN, yjjQ | 11 | 0.59; 0.17; 0.13; 0.16; 0.24; 0.14; 0.18; 0.18; 0.11; 0.11; 0.11 | 6, 15, 29, 57, 76, 102, 166, 176, 206, 231, 334 |
| yrhB | dicC, gcvA, yagI, yjjQ, fimZ, ulaR, nac, argP | 8 | 0.26; 0.14; 0.14; 0.16; 0.13; 0.11; 0.11; 0.10 | 100, 128, 144, 224, 259, 344, 387, 427 |
| yrhD | yagI, yncC, yjjQ, fimZ, nac | 5 | 0.14; 0.20; 0.16; 0.13; 0.11 | 145, 166, 225, 260, 386 |
| yriA | cbl, yeiI, cpxR, argR | 4 | 0.24; 0.37; 0.13; 0.16 | 40, 71, 92, 203 |
| yriB | cbl, yeiI, cpxR, argR | 4 | 0.24; 0.37; 0.13; 0.16 | 40, 73, 92, 203 |
| ysaA | yidZ, sxy, yncC | 3 | 0.20; 0.14; 0.14 | 216, 263, 270 |
| ysaA-yiaJ,yiaJ | melR, yidZ, yncC | 3 | 0.49; 0.20; 0.16 | 4, 206, 230 |
| ysaB | galS, yjjQ, gadW, mraZ, nagC, deoR, pdhR, envY, dgsA, cynR | 10 | 0.32; 0.83; 0.21; 0.16; 0.12; 0.24; 0.11; 0.12; 0.11; 0.14 | 2, 3, 37, 49, 55, 59, 75, 103, 124, 187 |
| ysaE | allR, sfsB, aaeR, ybaQ, sxy, ulaR | 6 | 0.13; 0.38; 0.23; 0.22; 0.13; 0.11 | 47, 57, 195, 200, 294, 353 |
| ysdD | cbl, ypdC, sxy, argR, yjjQ | 5 | 0.10; 0.12; 0.13; 0.13; 0.12 | 249, 256, 274, 304, 305 |
| ysdE | fimZ, nrdR, tyrR, ycjW, dicA, ttk | 6 | 0.72; 0.22; 0.19; 0.11; 0.14; 0.14 | 7, 29, 42, 96, 248, 327 |
| ysgA | exuR, yfeC, dicA, ypdC | 4 | 0.14; 0.16; 0.27; 0.22 | 45, 47, 48, 87 |
| ysgD | sfsB, treR, melR, ttk | 4 | 0.40; 0.22; 0.17; 0.13 | 50, 56, 103, 374 |
| yshB | tyrR, yeiI, sxy, ypdC, argR | 5 | 0.11; 0.20; 0.15; 0.12; 0.14 | 162, 210, 248, 261, 274 |
| ytcA | argP, yncC | 2 | 0.41; 0.29 | 37, 100 |
| ytfA | dicC, ybaQ | 2 | 0.21; 0.20 | 185, 236 |
| ytfB | dicC, nac, cynR, cysB | 4 | 0.23; 0.23; 0.13; 0.11 | 151, 160, 210, 322 |
| ytfE | nsrR, fimZ, aaeR, nac | 4 | 1.00; 0.19; 0.20; 0.13 | 1, 152, 263, 314 |
| ytfF | cusR, dicA | 2 | 0.46; 0.22 | 6, 98 |
| ytfF-qorB,qorB | ytfH, iscR, argP, cysB, dicA, dicC | 6 | 1.00; 0.14; 0.18; 0.12; 0.11; 0.12 | 1, 75, 245, 287, 344, 423 |
| ytfH | ytfH, iscR, gadW, argP, dicA, dicC, ybaQ | 7 | 1.00; 0.14; 0.10; 0.18; 0.11; 0.12; 0.10 | 2, 74, 172, 246, 345, 424, 562 |
| ytfI | gadW, lldR, dicC, iscR, nac | 5 | 0.24; 0.19; 0.27; 0.12; 0.28 | 23, 77, 91, 104, 116 |
| ytfJ | argP, relE, lldR, yjjQ, yidZ | 5 | 0.32; 0.11; 0.11; 0.14; 0.16 | 71, 125, 238, 270, 295 |
| ytfK | argP, relE, lldR, yjjQ, yidZ | 5 | 0.32; 0.11; 0.11; 0.14; 0.16 | 70, 127, 237, 270, 295 |
| ytfL | cpxR, iscR, lldR, envY, exuR, nrdR, yafN, ypdC, argR | 9 | 0.40; 0.34; 0.19; 0.13; 0.10; 0.13; 0.15; 0.19; 0.15 | 5, 12, 76, 85, 94, 111, 125, 125, 227 |
| ytfL5p | argP, relE, yjjQ, yidZ, dicC | 5 | 0.32; 0.11; 0.14; 0.16; 0.13 | 71, 125, 272, 294, 372 |
| ytfP | yddM, sfsB, sxy, yncC, cbl | 5 | 0.27; 0.71; 0.18; 0.18; 0.11 | 4, 10, 181, 197, 220 |
| ytfQ-ytfT-yjfF-ytfR | galR, iscR, tyrR, deoR, lldR | 5 | 0.12; 0.24; 0.19; 0.14; 0.11 | 14, 29, 45, 205, 255 |
| ytgA | envY, dicA | 2 | 0.17; 0.17 | 51, 162 |
| ythA | argP, arsR, ypdC, ulaR, dicA, nac, yidZ | 7 | 0.49; 0.22; 0.15; 0.16; 0.14; 0.15; 0.10 | 26, 136, 192, 212, 249, 274, 485 |
| ythB | ybaQ, yeiI | 2 | 0.29; 0.21 | 100, 187 |
| ytiB | yidZ, aaeR, ybaQ | 3 | 0.48; 0.39; 0.14 | 25, 66, 389 |
| ytiC | cynR, kdgR, yjjQ, dgsA, yfeC, dicC, cbl, nac, ulaR | 9 | 0.40; 0.10; 0.34; 0.12; 0.10; 0.24; 0.14; 0.14; 0.12 | 14, 36, 56, 97, 111, 131, 145, 287, 316 |
| ytjA | ypdC, dicC, ttk | 3 | 0.14; 0.15; 0.11 | 218, 308, 463 |
| ytjC | fimZ, yidZ, cusR | 3 | 0.82; 0.41; 0.10 | 4, 40, 69 |
| yzcX | hcaR, nagC, cbl, yncC, uxuR, iclR, dicC | 7 | 0.13; 0.10; 0.16; 0.16; 0.11; 0.13; 0.12 | 30, 67, 128, 220, 269, 398, 454 |
| yzfA | sxy, yidZ, arsR, cysB | 4 | 0.52; 0.24; 0.15; 0.11 | 22, 142, 265, 330 |
| yzgL | betI, exuR, cusR, arsR, argP | 5 | 0.10; 0.14; 0.10; 0.19; 0.16 | 40, 43, 68, 185, 295 |
| yzgL-glgP,glgP | yjjQ, lldR | 2 | 0.41; 0.12 | 30, 207 |
| zapA-ssrS-fau,zapA | rutR, ydjF | 2 | 0.22; 0.12 | 30, 36 |
| zapB | ybhD, glpR, srlR, arsR, cynR | 5 | 0.24; 0.12; 0.12; 0.18; 0.13 | 6, 12, 35, 194, 208 |
| zapC | uxuR, envY, lldR, iclR, argP, sfsB | 6 | 0.16; 0.11; 0.13; 0.20; 0.14; 0.10 | 123, 133, 191, 205, 331, 408 |
| zinT | modE, zur, yhfR, nrdR, yncC | 5 | 0.23; 1.00; 0.11; 0.12; 0.14 | 2, 2, 35, 133, 271 |
| zipA5p | fimZ | 1 | 0.18 | 172 |
| zitB | yeiI | 1 | 0.16 | 287 |
| zntA,zntA-yhhQ | ypdC, cbl, ulaR, yjjQ | 4 | 0.23; 0.15; 0.17; 0.13 | 78, 136, 190, 273 |
| zntR-yhdN,zntR-yhdN-arfA | melR, gcvA, yjjQ, yidZ | 4 | 0.32; 0.18; 0.14; 0.16 | 20, 76, 257, 283 |
| zntR-yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,rplQ-rpoA-rpsD-rpsK-rpsM | gadW, ydjF, uxuR, arsR, ypdC, fimZ, dicC | 7 | 0.19; 0.11; 0.22; 0.23; 0.11; 0.11; 0.13 | 42, 47, 70, 121, 299, 305, 417 |
| znuC,znuC-znuB | zur, aaeR, cbl, ulaR, deoR, sxy, sfsB | 7 | 0.27; 0.50; 0.21; 0.17; 0.14; 0.14; 0.10 | 5, 29, 64, 198, 214, 258, 399 |
| zraP | zraR, purR, uxuR | 3 | 1.00; 0.13; 0.11 | 1, 11, 248 |
| zraS-zraR | zraR, purR, ybhD, uxuR | 4 | 1.00; 0.13; 0.12; 0.11 | 2, 10, 34, 249 |
| zupT | cbl, lldR | 2 | 0.14; 0.14 | 160, 166 |
| zur | nrdR, basR, nsrR, yjjQ, yncC, yidZ, ulaR, nac | 8 | 0.34; 0.20; 0.17; 0.39; 0.17; 0.18; 0.12; 0.13 | 7, 12, 23, 37, 213, 251, 296, 334 |
| zwf | yciT, ybaQ, matA, yidZ, cysB, ulaR, dicA, gcvA, deoR, yeiI, iclR | 11 | 0.21; 0.30; 0.11; 0.26; 0.20; 0.20; 0.16; 0.10; 0.13; 0.16; 0.15 | 7, 93, 118, 128, 129, 139, 187, 223, 256, 274, 320 |