yihR Promoter Prediction

Each promoter for each TF is scored according to the maximum binding score over the sequence. Promoter scores are normalized to 1 for the maximum score and 0 for the score of the average promoter. Promoters are also ranked by score (1 being the highest ranked promoter for that TF). Only TFs with promoters scores greater than or equal to 0.2 have predictions shown.

Predictions of TF models for TFs that score above threshold as described in the help for the box above. Top row shows gene annotations. Each set of panels beneath the annotation row shows the predictions for one TF. The sequence logo shows the contribution of the base at each position to the overall binding affinity, with bases above the horizontal axis contributing positive binding affinity and bases below contributing negative binding affinity. The heatmaps below the sequence logos show the exponentiated binding score at each position (the exponentiated score of the weight matrix and bias at that position). The top heatmap in green shows hits on the positive strand, and the bottom heatmap in red shows hits on the negative strand. Right click and save/open image to view predictions in larger image.