Top Promoters Bound by ypdC

On this page you can access the list of promoter regions bound by ypdC. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
mgsA 1.000 1
ybbA,ybbA-ybbP 0.755 2
ybbN-ybbO-tesA,ybbO-tesA 0.755 2
yaeF 0.666 4
yjcS 0.645 5
pdxY-tyrS,tyrS 0.629 6
chiQ 0.586 7
oppB-oppC-oppD-oppF 0.509 8
wbbK-wbbJ-wbbI 0.490 9
cspD 0.490 11
yljB 0.490 11
clpS,clpS-clpA 0.490 11
glpR 0.481 13
potF-potG-potH,potF-potG,potF-potG-potH-potI 0.443 14
yaiP 0.441 15
ykiC 0.441 15
yddM 0.435 17
ybiW-ybiY 0.414 18
fsaA 0.414 18
ybgU 0.412 21
sdhC-sdhD-sdhA-sdhB,sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX 0.412 21
sdhD-sdhA-sdhB 0.412 21
pfkA 0.406 23
recF 0.404 24
ydhZ 0.404 25
uvrB 0.401 26
napC-napB-napH-napG-napA-napD-napF,ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA-napC-napB-napH-napG-napA-napD-napF,napA-napD-napF 0.379 27
eco 0.379 27
xapB-xapA 0.378 29
yfeN 0.378 29
pgk-epd,fbaA-pgk-epd 0.367 31
insH-2-nmpC,insH-2 0.364 32
glyV-glyX-glyY 0.359 33
rsmG-mnmG,mnmG 0.355 34
ylcH 0.346 35
ybcN-ninE-ybcO-rusA-ylcG 0.346 35
glmM-folP 0.338 37
mngR 0.331 38
mngA-mngB 0.331 38
ulaG 0.329 40
ulaA-ulaB-ulaC-ulaD-ulaE,ulaA-ulaB-ulaC-ulaD-ulaE-ulaF 0.329 40
ydfH 0.328 42
gntP 0.323 43
uxuA-uxuB 0.323 43
bsmA 0.319 45
yjfP 0.319 45
glnQ-glnP-glnH,glnH 0.316 47
alaC 0.309 48
ypdA-ypdB-ypdC 0.309 48
yhdT-panF-prmA-dusB,yhdT-panF-prmA 0.308 50
dsbA 0.300 51
dcuR 0.291 52
lpxD 0.282 53
yijE 0.278 54
exuT 0.272 55
adiA 0.270 56
yaiA-aroM 0.269 57
dtpA 0.263 58
yldA 0.260 59
yjhU 0.259 60
ydhT-ydhU-ydhX 0.258 61
ribA 0.253 62
pgpB-yciS,pgpB 0.253 62
gpsA-secB,cysE-gpsA-secB 0.253 64
citG-citX-citF-citE-citD-citC 0.248 65
citA-citB 0.248 65
chbG-chbF-chbR-chbA-chbC-chbB,chbC-chbB 0.247 67
fre 0.247 68
sokX 0.243 69
ydfJ 0.240 70
yfdE 0.239 71
ygbF-ygbT-casE-casD-casC-casB-casA 0.239 72
glgB-asd,asd 0.235 73
yhgN 0.235 73
fliL-fliM-fliN-fliO-fliP-fliQ-fliR 0.233 75
fbp 0.229 76
pykA 0.228 77
zntA,zntA-yhhQ 0.227 78
yahK 0.225 79
ybgA-phr 0.225 80
grxD 0.224 81
yoeF 0.224 82
yahA 0.223 83
apaH-apaG-rsmA-pdxA,rsmA-pdxA 0.223 84
mutM-rpmG-rpmB-yicR,rpmG-rpmB-yicR 0.223 85
dfp,dfp-dut-ttk 0.223 85
ysgA 0.222 87
udp-rmuC,udp,udp-rmuC-ubiE-ubiJ-esrE 0.222 87
purB-hflD-mnmA,mnmA 0.215 89
araD-araA-araB,araA-araB 0.215 90
araC,araC-yabI 0.215 90
rcsA 0.215 92
yhcA-yhcD 0.214 93
alsK 0.213 94
yohD 0.212 95
ydiF-ydiO 0.210 96
proV-proW-proX 0.210 97
cspI 0.209 98
fryA-ypdE-ypdF-fryC-fryB 0.209 99
ridA-pyrI-pyrB 0.208 100
ridA-pyrI-pyrB-pyrL 0.208 100
ygbA 0.208 102
mutS-pphB,mutS 0.208 102
yfjJ 0.207 104
lpxA-lpxB,lpxA-lpxB-rnhB,lpxA 0.207 105
yegW-yegX-thiD-thiM,thiD-thiM 0.206 106
rcnA-rcnB 0.206 106
umpH 0.206 108
ogt 0.202 109
cysH 0.202 110