Top Promoters Bound by ypdC

On this page you can access the list of promoter regions bound by ypdC. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs)	Scores	Ranks

mgsA	1.000	1
ybbA,ybbA-ybbP	0.755	2
ybbN-ybbO-tesA,ybbO-tesA	0.755	3
yaeF	0.666	4
yjcS	0.645	5
pdxY-tyrS,tyrS	0.629	6
chiQ	0.586	7
oppB-oppC-oppD-oppF	0.509	8
wbbK-wbbJ-wbbI	0.490	9
yljB	0.490	10
cspD	0.490	11
clpS,clpS-clpA	0.490	11
glpR	0.481	13
potF-potG-potH,potF-potG,potF-potG-potH-potI	0.443	14
yaiP	0.441	15
ykiC	0.441	15
yddM	0.435	17
ybiW-ybiY	0.414	18
fsaA	0.414	19
ybgU	0.412	20
sdhD-sdhA-sdhB	0.412	20
sdhC-sdhD-sdhA-sdhB,sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX	0.412	22
pfkA	0.406	23
recF	0.404	24
ydhZ	0.404	25
uvrB	0.401	26
napC-napB-napH-napG-napA-napD-napF,ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA-napC-napB-napH-napG-napA-napD-napF,napA-napD-napF	0.379	27
eco	0.379	28
xapB-xapA	0.378	29
yfeN	0.378	29
pgk-epd,fbaA-pgk-epd	0.367	31
insH-2-nmpC,insH-2	0.364	32
glyV-glyX-glyY	0.359	33
rsmG-mnmG,mnmG	0.355	34
ylcH	0.346	35
ybcN-ninE-ybcO-rusA-ylcG	0.346	36
glmM-folP	0.338	37
mngA-mngB	0.331	38
mngR	0.331	39
ulaA-ulaB-ulaC-ulaD-ulaE,ulaA-ulaB-ulaC-ulaD-ulaE-ulaF	0.329	40
ulaG	0.329	41
ydfH	0.328	42
gntP	0.323	43
uxuA-uxuB	0.323	43
bsmA	0.319	45
yjfP	0.319	45
glnQ-glnP-glnH,glnH	0.316	47
ypdA-ypdB-ypdC	0.309	48
alaC	0.309	49
yhdT-panF-prmA-dusB,yhdT-panF-prmA	0.308	50
dsbA	0.300	51
dcuR	0.291	52
lpxD	0.282	53
yijE	0.278	54
exuT	0.272	55
adiA	0.270	56
yaiA-aroM	0.269	57
dtpA	0.263	58
yldA	0.260	59
yjhU	0.259	60
ydhT-ydhU-ydhX	0.258	61
ribA	0.253	62
pgpB-yciS,pgpB	0.253	63
gpsA-secB,cysE-gpsA-secB	0.253	64
citG-citX-citF-citE-citD-citC	0.248	65
citA-citB	0.248	66
chbG-chbF-chbR-chbA-chbC-chbB,chbC-chbB	0.247	67
fre	0.247	68
sokX	0.243	69
ydfJ	0.240	70
yfdE	0.239	71
ygbF-ygbT-casE-casD-casC-casB-casA	0.239	72
yhgN	0.235	73
glgB-asd,asd	0.235	74
fliL-fliM-fliN-fliO-fliP-fliQ-fliR	0.233	75
fbp	0.229	76
pykA	0.228	77
zntA,zntA-yhhQ	0.227	78
yahK	0.225	79
ybgA-phr	0.225	80
grxD	0.224	81
yoeF	0.224	82
yahA	0.223	83
apaH-apaG-rsmA-pdxA,rsmA-pdxA	0.223	84
mutM-rpmG-rpmB-yicR,rpmG-rpmB-yicR	0.223	85
dfp,dfp-dut-ttk	0.223	85
ysgA	0.222	87
udp-rmuC,udp,udp-rmuC-ubiE-ubiJ-esrE	0.222	87
purB-hflD-mnmA,mnmA	0.215	89
araD-araA-araB,araA-araB	0.215	90
araC,araC-yabI	0.215	90
rcsA	0.215	92
yhcA-yhcD	0.214	93
alsK	0.213	94
yohD	0.212	95
ydiF-ydiO	0.210	96
proV-proW-proX	0.210	97
cspI	0.209	98
fryA-ypdE-ypdF-fryC-fryB	0.209	99
ridA-pyrI-pyrB	0.208	100
ridA-pyrI-pyrB-pyrL	0.208	101
ygbA	0.208	102
mutS-pphB,mutS	0.208	102
yfjJ	0.207	104
lpxA-lpxB,lpxA-lpxB-rnhB,lpxA	0.207	105
rcnA-rcnB	0.206	106
yegW-yegX-thiD-thiM,thiD-thiM	0.206	107
umpH	0.206	108
ogt	0.202	109
cysH	0.202	110
dld	0.198	111
bglX	0.198	112
yfeX	0.197	113
ydjF	0.197	114
yghQ	0.197	115
rraA	0.197	116
yehR	0.194	117
bdcA	0.194	118
yjgJ-tabA,yjgJ	0.194	118
ynbG	0.193	120
ttdR	0.192	121
ftsP	0.191	122
rpoS-nlpD	0.190	123
proK	0.189	124
ytfL	0.189	125
yoeA	0.188	126
ybeL	0.188	127
cobC-nadD-holA-lptE-leuS,holA-lptE-leuS,lptE-leuS	0.188	128
yeiL	0.188	129
yfgG	0.186	130
yfgF	0.186	131
yhcC5p	0.186	132
ykgL	0.185	133
rihB	0.183	134
yfdP-yfdQ	0.181	135
yfdK-yfdL-yfdM-yfdN-oweS	0.181	136
rsxA-rsxB,rsxA-rsxB-rsxC-rsxD-rsxG-rsxE-nth	0.179	137
rclC-rclB	0.179	138
leuD-leuC-leuB-leuA-leuL,leuL	0.177	139
leuO	0.177	140
elaD	0.177	141
flgN-flgM	0.176	142
yddY	0.174	143
htpG,htpG-adk	0.174	144
ycaL	0.173	145
yehI	0.172	146
patD	0.172	147
yjjP	0.170	148
ykfI-yafW-ykfG-ykfH	0.170	149
ubiX-purF-cvpA,purF-cvpA	0.169	150
rimK-ybjN	0.168	151
nepI	0.168	152
ypeC	0.167	153
ilvI-ilvH,ilvI-ilvH-fruR	0.167	154
yabR	0.167	155
yghF	0.164	156
setB	0.164	157
fruA-fruK-fruB	0.164	158
ptsH-ptsI-crr,ptsH,ptsH-ptsI	0.163	159
narV-narW	0.161	160
mgtA-mgtL	0.161	161
yibA	0.161	162
yihF	0.160	163
rlmF	0.158	164
mcbA	0.158	165
murB-birA	0.158	166
yceF	0.158	167
yceD-rpmF-plsX-fabH-fabD,yceD-rpmF-plsX-fabH,yceD-rpmF	0.158	168
sraB	0.158	169
fixA-fixB-fixC,fixA-fixB-fixC-fixX	0.157	170
yccM	0.155	171
dusC	0.155	172
yohJ-yohK,yohJ-yohK-cdd	0.155	172
dadA-dadX	0.155	174
ycgB	0.155	175
yfdY	0.154	176
lpxP	0.154	176
waaH-tdh-kbl,tdh-kbl	0.153	178
yaaU	0.151	179
yfiE	0.150	180
eamB	0.150	181
yggE-argO-mscS,mscS	0.150	182
yhfS-yhfT-yhfU-php-yhfW-yhfX	0.149	183
rnd	0.149	184
ryjB	0.149	185
elfD-elfC-elfG-ycbU-ycbV-ycbF	0.148	186
phnP-phnO-phnN-phnM-phnL	0.148	187
torC-torA-torD	0.148	188
torR	0.148	189
yjiJ	0.147	190
yfcO-yfcP-yfcQ-yfcR-yfcS-yfcU	0.146	191
ythA	0.146	192
dosC-yddW,yddW	0.146	193
rbsD-rbsA-rbsC-rbsB,rbsD-rbsA-rbsC-rbsB-rbsK-rbsR	0.145	194
ygeA	0.145	195
mbiA	0.145	196
satP	0.145	197
pka	0.145	198
tyrB	0.145	199
yfgM-hisS-ispG,ispG-sroE	0.144	200
ycaK	0.143	201
pyrG-mazG-mazF-mazE,mazG-mazF-mazE	0.143	202
allS	0.143	203
allA	0.143	204
rlmM-ygdD,ygdD	0.142	205
dsbB-nhaB,nhaB	0.141	206
rspB-rspA	0.141	207
ynfB-speG	0.141	208
xanQ-guaD-ghxQ	0.141	209
proA-thrW	0.141	210
serW	0.140	211
yagP	0.140	212
yjjJ	0.140	213
tsx	0.138	214
pheM-rplT-rpmI-infC,rplT-rpmI-infC,infC	0.137	215
yfjR-ypjK-yfjS-yfjT	0.137	216
yjjU-yjjV	0.137	217
ytjA	0.137	218
mhpT	0.136	219
glcB-glcG	0.135	220
yhiS	0.135	221
yggE	0.133	222
uspE-fnr,fnr	0.133	223
aceB-aceA-aceK,aceB-aceA	0.132	224
agaR	0.132	225
kbaZ-agaV-agaW-agaA	0.132	225
codB-codA	0.131	227
yffL	0.131	228
treC	0.130	229
mgtA5p	0.130	230
cysE-gpsA-secB-grxC-yibN,gpsA-secB-grxC-yibN,yibN	0.130	231
gpmM-envC,gpmM-envC-yibQ,gpmM	0.130	231
nikA-nikB-nikC-nikD,nikA-nikB-nikC-nikD-nikE-nikR	0.129	233
rplX-rplN-rpsQ-rpmC	0.129	234
rplF-rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP	0.129	235
nrdG-nrdD	0.128	236
rrlA-rrfA,rrlA	0.128	237
rrfD-rrlD	0.128	238
yqhC	0.128	239
yqhD-dkgA	0.128	240
hemY-hemX	0.127	241
insQ	0.126	242
fucI	0.126	243
yeaC	0.126	244
ivy	0.126	245
yafV	0.126	246
ygbL-ygbM	0.126	247
yggI	0.125	248
insI-3	0.125	249
yaiY	0.125	250
yaiZ	0.125	250
yncD	0.124	252
yncE	0.124	253
ptrB	0.124	254
rpmH-rnpA-yidD,rpmH-rnpA,rpmH-rnpA-yidC-mnmE-yidD,rpmH,rpmH-rnpA-yidC-yidD	0.123	255
recF-dnaN-dnaA,dnaN-dnaA	0.123	256
ysdD	0.123	256
eno-pyrG	0.123	258
cadA-cadB	0.123	259
fimA-fimI-fimC,fimA,fimA-fimI-fimC-fimD-fimF-fimG-fimH	0.122	260
yshB	0.122	261
lepA,lepB-lepA	0.122	262
rzpQ-rrrQ-ydfR-essQ	0.121	263
ynfU	0.121	263
thrB-thrC,thrB	0.120	265
yjdC-dsbD	0.119	266
rrlH-rrfH	0.119	267
rayT	0.118	268
rrsH-ileV-alaV-rrlH-rrfH,rrsH-ileV-alaV,rrsH-ileV	0.118	269
rrsE,rrsE-gltV,rrsE-gltV-rrlE-rrfE	0.118	269
purD-purH	0.118	271
lspA-fkpB-ispH	0.118	272
yibT	0.118	273
yibL	0.118	274
phoE	0.117	275
proB,proB-proA,proB-proA-thrW	0.117	275
ygiQ	0.117	277
yhgE	0.117	278
pck	0.117	278
bluF	0.117	280
ycgZ-ymgA-ariR-ymgC,ycgZ	0.117	280
fdhD	0.117	282
fdhE-fdoI-fdoH-fdoG,fdoH-fdoG	0.117	283
speC	0.117	284
yqgA-pheV,yqgA	0.117	285
ydiP	0.116	286
ydiQ-ydiR-ydiS-ydiT-fadK	0.116	286
recA,recX-recA	0.116	288
ghrB	0.115	289
ybaE	0.115	290
cof	0.115	290
arcB	0.115	292
yjbI	0.114	293
maa-hha	0.113	294
ycjD	0.112	295
wzxC-wcaJ-cpsG-cpsB-wcaI-wcaH-wcaG-gmd-wcaF-wcaE-wcaD-wcaC	0.112	296
hslJ	0.111	297
rplQ-rpoA-rpsD-rpsK-rpsM-rpmJ	0.111	298
zntR-yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,rplQ-rpoA-rpsD-rpsK-rpsM	0.111	299
fadH	0.111	300
yjgH	0.111	301
uxuR	0.111	302
yjdC	0.111	303
ftnB	0.110	304
araG-araF-araH	0.110	305
yggC-yggD,epd-yggC-yggD	0.110	306
yhcO	0.110	307
amiC	0.110	308
argA	0.110	308
artM-artQ-artI-artP	0.109	310
dedD-folC	0.109	311
ushA	0.109	312
fsr	0.109	313
ligA-zipA-ypeB,ligA-zipA,zipA	0.108	314
cysZ,cysZ-cysK	0.108	314
insC-6-insD-6-insCD6	0.108	316
mtfA-asnT,mtfA	0.108	317
fliY-fliZ-fliA	0.107	318
ygfI5p	0.107	319
mprA-emrA-emrB	0.107	320
ssnA	0.106	321
waaH	0.106	322
ylaB	0.105	323
yihL-yihM-yihN,yihL-yihM	0.105	324
intE-xisE-ymfH	0.105	325
yrdA	0.105	326
rrfF-thrV-rrfD-rrlD-alaU-ileU-rrsD,alaU-ileU-rrsD,rrsD	0.105	327
cbpM-cbpA	0.105	328
yccE	0.105	328
yqiA-cpdA-yqiB-nudF,cpdA-yqiB-nudF,parE-yqiA-cpdA-yqiB-nudF	0.103	330
tolC,tolC-ygiB-ygiC,tolC-ygiA-ygiB-ygiC,tolC-ygiA-ygiB	0.103	330
cysC-cysN-cysD,ftsB-ygbE-cysC-cysN-cysD	0.103	332
iap	0.103	332
yhjJ	0.102	334
ygjH	0.102	335
ydjE	0.102	336
yihA	0.102	337
csrC	0.102	337
yihI,yihI-hemN	0.102	339
ygiZ	0.102	340
mdaB,mdaB-ygiN	0.102	340
yajR	0.102	342
fadD	0.101	343
yajD	0.101	344