Top Promoters Bound by aaeR

On this page you can access the list of promoter regions bound by aaeR. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
yaiV 1.000 1
aaeB-aaeA-aaeX 0.939 2
aaeR 0.939 3
intA 0.881 4
nupG 0.877 5
rimO 0.875 6
bssR 0.875 6
alaA-yfbR,alaA 0.833 8
apaH-apaG-rsmA 0.819 9
yhdJ 0.761 10
ydfO-ynfO 0.760 11
tfaQ-stfQ-nohQ 0.760 12
hlyE 0.754 13
umuD-umuC 0.754 14
hemY-hemX 0.753 15
yhfA 0.744 16
crp,crp-yhfK 0.744 16
yqeG 0.633 18
yqeF 0.633 19
mliC 0.599 20
pdxY-tyrS-pdxH,tyrS-pdxH 0.599 21
csgG-csgF-csgE-csgD,csgF-csgE-csgD 0.597 22
mutM-rpmG-rpmB,rpmG-rpmB 0.595 23
yddM 0.585 24
hpf-ptsN-yhbJ-npr 0.570 25
yoaH 0.528 26
pabB-nudL 0.528 27
dusA-pspG,dusA 0.513 28
znuC,znuC-znuB 0.503 29
yegX 0.496 30
tpr-tyrV 0.491 31
tpr-tyrV-tyrT 0.491 31
ibsD 0.487 33
appY 0.475 34
ybcY 0.471 35
ftsP-plsC,plsC 0.468 36
bluF 0.468 37
ycgZ-ymgA-ariR-ymgC,ycgZ 0.468 37
yhcG 0.464 39
yagI 0.453 40
wzxC-wcaJ-cpsG-cpsB-wcaI-wcaH-wcaG-gmd-wcaF-wcaE-wcaD-wcaC 0.450 41
yneJ 0.448 42
yneG-glsB-sad,sad 0.448 43
rpoH-ftsX-ftsE 0.447 44
actP-yjcH-acs,acs 0.438 45
nrfA-nrfB-nrfC-nrfD,nrfA-nrfB-nrfC-nrfD-nrfE-nrfF-nrfG 0.438 45
msbA-lpxK-ycaQ-ycaR,msbA-lpxK 0.431 47
rpsI-rplM-zapE,zapE 0.431 48
yhcB,yhcB-degQ 0.431 48
yqeL 0.428 50
waaH 0.428 51
murI,murI-rrsB-gltT 0.425 52
yhhZ-insA-6-insB-6-insAB6 0.421 53
nc9 0.420 54
speE,speD-speE 0.420 55
cyoE-cyoD-cyoC,cyoD-cyoC 0.417 56
gadX-gadA 0.413 57
yjhG-yjhH-yjhI 0.406 58
tfaD 0.396 59
aaaD 0.396 60
ilvL-ilvM-ilvE-ilvD-ilvA-ilvG-ilvX,ilvL,ilvL-ilvM-ilvE-ilvG-ilvX 0.395 61
yifB 0.395 62
osmE 0.393 63
nadE,nadE-cho 0.393 64
yjeM,yjeM-yjeN-yjeO 0.390 65
ytiB 0.389 66
yoaI 0.386 67
yeaL 0.386 67
yiaB 0.382 69
yiaA 0.382 70
ygeG 0.381 71
yphG 0.380 72
yphH 0.380 73
rcsA 0.379 74
rfbD-rfbB-wcaN,wcaN 0.378 75
rseC-rseB 0.377 76
yaeF 0.376 77
ybjL-rybB,ybjL 0.370 78
ybjM 0.370 78
yffL 0.368 80
gspB-gspA 0.367 81
gspC-gspD-gspE-gspF-gspG-gspH-gspI-gspJ-gspK-gspL-gspM-gspO 0.367 81
yfjH 0.366 83
yfjI 0.366 84
alpA 0.366 85
yfeT 0.365 86
murQ-murP-yfeW,murQ-murP 0.365 87
dapD-glnD,glnD 0.360 88
yafN-yafO-yafP 0.359 89
yjeJ 0.356 90
gpp 0.345 91
lsrR,lsrK-lsrR 0.344 92
lsrA-lsrC-lsrD-lsrB-lsrF-lsrG-tam 0.344 93
yccT 0.341 94
yccU 0.341 95
yodC 0.340 96
yedQ 0.340 97
gapC 0.340 98
cybB,cybB-ydcA-sokB 0.340 98
yqiA-cpdA-yqiB-nudF,cpdA-yqiB-nudF,parE-yqiA-cpdA-yqiB-nudF 0.335 100
tolC,tolC-ygiB-ygiC,tolC-ygiA-ygiB-ygiC,tolC-ygiA-ygiB 0.335 100
yebW 0.335 102
yebV 0.335 103
pck 0.333 104
ybeF 0.330 105
ybdJ 0.329 106
ybdF,nfsB-ybdF 0.329 107
dsbG 0.328 108
ahpC,ahpC-ahpF 0.328 109
umpH-nagC,nagC 0.328 110
atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI 0.327 111
potF-potG-potH,potF-potG,potF-potG-potH-potI 0.326 112
mepM-znuA,znuA 0.324 113
yedD 0.323 114
mreD-mreC-mreB,yhdE-mreD-mreC-mreB,mreB 0.314 115
rhaT 0.313 116
sodA-kdgT,sodA 0.313 116
yedE-yedF,yedE-yedF-yedK-yedL 0.313 118
sodB 0.313 119
hchA 0.311 120
ansP 0.311 121
yncG 0.311 121
ydhQ 0.310 123
valV-valW 0.310 123
bisC 0.307 125
yiaD 0.307 125
proP,proP-pmrR 0.306 127
yddB-yddA,yddA 0.303 128
pagP 0.301 129
ldtD-ycbK-ycbL,ldtD 0.301 130
yihA 0.300 131
yihI,yihI-hemN 0.300 132
csrC 0.300 133
kdgR 0.298 134
yebQ 0.298 134
narV-narW-narY-narZ 0.291 136
torC-torA-torD 0.287 137
torR 0.287 138
lfhA 0.286 139
lafU 0.286 140
rpmH-rnpA-yidD,rpmH-rnpA,rpmH-rnpA-yidC-mnmE-yidD,rpmH,rpmH-rnpA-yidC-yidD 0.286 141
csgB-csgA-csgC 0.285 142
queF,queF-ygdH 0.283 143
truC-yqcC-csrB 0.283 144
cysB 0.283 145
aqpZ 0.280 146
ybjD 0.280 146
yeeY-yeeZ-yefM-yoeB,yeeZ-yefM-yoeB,yefM-yoeB 0.279 148
hisL-hisG-hisD-hisC-hisB-hisH-hisA-hisF-hisI,hisL 0.279 148
gnsB 0.277 150
nadC 0.273 151
ampD-ampE 0.273 152
hslJ 0.273 153
yghF 0.272 154
yghG 0.272 155
caiE-caiD-caiC-caiB-caiA-caiT 0.270 156
ykgP 0.269 157
eaeH-insE-1-insF-1-insEF1 0.269 158
ycjD 0.267 159
lacI 0.265 160
ynbA-ynbB-ynbC-ynbD 0.265 161
icd 0.265 162
nudJ-rluE 0.265 163
tsaE-amiB,tsaE-amiB-mutL,tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC 0.264 164
ryjA 0.264 165
ghxP-yjcE,ghxP 0.264 166
yffQ-yffR 0.264 167
insH-11 0.263 168
yraN-diaA-yraP,yraN 0.262 169
ybfK 0.262 170
lgoT 0.258 171
mdtH 0.256 172
yceH 0.256 173
rihB 0.255 174
yeiL 0.255 174
ygfK-ssnA 0.254 176
creA-creB-creC,creA-creB,creA-creB-creC-creD 0.254 177
rob 0.254 178
yhgE 0.248 179
yncC 0.247 180
pflB 0.244 181
mnmE 0.243 182
ycaL 0.243 183
yeaV-yeaW 0.240 184
bglX 0.239 185
dld 0.239 186
yfbM 0.238 187
yehR 0.238 188
yciE 0.238 189
ynbG 0.236 190
ydbA 0.236 190
insJ 0.233 192
insJK 0.233 192
hokA 0.233 194
ysaE 0.233 195
yncI 0.232 196
yaiO 0.232 197
insC-1-insD-1 0.232 198
insC-1-insD-1-insCD1 0.232 198
infB-nusA 0.230 200
pabC-yceG-tmk,pabC-yceG-tmk-holB-ycfH 0.230 201
yahL 0.229 202
degP 0.228 203
mukF-mukE 0.228 204
gadW 0.228 205
gadY 0.228 206
ydiF-ydiO 0.227 207
yfaL 0.227 208
trpS-gph-rpe-dam 0.226 209
feaB 0.226 210
galP 0.223 211
ssnA 0.222 212
yfbL 0.222 213
yfbK 0.222 214
garR 0.221 215
ybfP 0.220 216
narL-narX 0.220 217
narK 0.220 218
ada-apbE-ompC,ompC 0.219 219
micF 0.219 219
ygeA 0.219 221
cvrA-ldcA,ldcA 0.218 222
insH-10 0.216 223
yhcF 0.216 223
hha-tomB 0.216 225
yggE-argO-mscS,mscS 0.214 226
cadA 0.213 227
yahD-yahE-yahF-yahG 0.212 228
yahC 0.212 229
cysT-glyW-pgsA-uvrC-uvrY,uvrC-uvrY 0.211 231
yecU 0.211 231
yecF 0.211 231
yhcA-yhcD 0.210 233
ybcV 0.210 234
ybcW 0.210 234
cca 0.210 236
yigF-yigG 0.210 237
yphB-yphC 0.209 238
ypjI 0.209 239
yfjX-yfjY-yfjZ-ypjF-ypjJ 0.209 240
wbbH-glf 0.209 241
kduI 0.209 242
ybfH 0.208 243
yohH 0.208 244
yohP 0.208 244
yqaE,ygaU-yqaE 0.207 246
yeaK-yeaL,yeaK 0.207 247
uidR 0.207 248
folX-yfcH 0.206 249
yafT 0.205 250
wzxB-rfbC-rfbA 0.205 251
yfjP-yfjQ 0.205 252
yihL-yihM-yihN,yihL-yihM 0.204 253
ycgR 0.203 254
ymgE 0.203 254
glnB 0.203 256
ybdO 0.202 257
yeiQ 0.202 258
htpX 0.200 259
matA 0.200 260
higA-higB 0.199 261
yncH 0.198 262
ytfE 0.198 263
lpoA-yraN-diaA,lpoA,lpoA-yraN-diaA-yraP 0.198 264
fixA-fixB-fixC,fixA-fixB-fixC-fixX 0.198 265
ygbF-ygbT-casE-casD 0.197 266
ypfM 0.196 267
yffB-dapE-ypfN 0.196 267
fimE 0.194 269
ybdD 0.194 270
yqhG 0.191 271
yceB 0.191 272
metL 0.191 273
ycgH 0.191 274
yggE 0.191 275
btuR-yciK 0.190 276
sohB 0.190 277
paaJ 0.190 278
hycI-hycH-hycG-hycF-hycE-hycD-hycC-hycB-hycA 0.187 279
hypA-hypB-hypC-hypD-hypE-fhlA,hypA-hypB-hypC-hypD-hypE 0.187 279
hypB-hypC-hypD-hypE-fhlA,hypB-hypC-hypD-hypE 0.187 281
ydgA 0.187 282
ydgJ 0.187 283
blr,cnu-ydgK-rsxA-blr 0.187 283
ecpA 0.186 285
pepQ-yigZ,pepQ-yigZ-trkH,pepQ-yigZ-trkH-hemG 0.186 286
rdgC 0.186 287
ydcI 0.183 288
ydcJ 0.183 288
yjhQ-yjhX,yjhP-yjhQ-yjhX 0.182 290
fsr 0.182 291
ushA 0.182 291
ulaA-ulaB-ulaC-ulaD-ulaE,ulaA-ulaB-ulaC-ulaD-ulaE-ulaF 0.182 293
ulaG 0.182 294
phoA-psiF 0.182 295
ydeP 0.182 296
ydjN 0.181 297
yebF-yebG,yebG 0.181 298
murA-ibaG-mlaB-mlaC,mlaB-mlaC 0.180 299
mglC-mglA 0.179 300
thiH-thiG-thiF-thiE-thiC-thiS,thiE-thiC,thiF-thiE-thiC-thiS 0.179 301
nrdG 0.179 302
rsmD-yhhL,rsmD-yhhL-yhhN 0.179 303
ftsX-ftsE-ftsY 0.179 304
tmpR 0.176 305
mog 0.174 306
insC-6-insD-6-insCD6 0.174 307
ybfL 0.174 308
ybfQ 0.174 309
ftsH-rlmE,rlmE 0.174 310
ffh,rpsP-ffh,rplS-trmD-rimM-rpsP-ffh 0.171 311
ydeR-ydeS-ydeT 0.170 312
yaaW 0.169 313
yobI 0.169 314
yebB 0.169 315
ruvB-ruvA 0.169 316
sbp 0.169 317
cysG 0.169 318
mscL 0.169 319
queG 0.169 320
mipA 0.168 321
yeaG-yeaH 0.168 321
paaX-paaY 0.168 323
rsmH-ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC 0.167 324
kilR-ydaE 0.167 325
racC 0.167 326
recC 0.166 327
ppdC 0.166 328
ymiA-yciX 0.165 329
ynjA 0.164 330
bcsQ-yhjR,yhjR 0.164 331
bcsE-bcsF,bcsE-bcsF-bcsG 0.164 331
bcsQ 0.164 333
yldA 0.163 334
yqjI 0.163 335
xapB-xapA 0.163 336
yfeN 0.163 337
slp-dctR 0.161 338
yfdV 0.161 339
cysP-ucpA,ucpA 0.159 340
ykfM 0.157 341
yejG5p 0.156 342
thrW 0.156 343
yicL 0.155 344
ygfI5p 0.155 345
ybaQ 0.154 346
ybaP 0.154 347
yhdV 0.154 348
putA 0.154 349
ymdG 0.154 349
putP 0.154 351
nc8 0.154 352
acnA 0.154 353
acnA-ymiC 0.154 354
mltD 0.154 355
mgtA5p 0.154 356
aphA-yjbQ-yjbR,aphA 0.153 357
yjbS 0.153 358
csiR 0.153 359
ihfA-pheT-pheS-pheM-rplT-rpmI-infC-thrS,pheM-rplT-rpmI-infC-thrS,rplT-rpmI-infC-thrS,thrS,infC-thrS 0.153 360
arpB 0.153 361
lysT-valT-lysW-valZ-lysY-lysZ-lysQ,lysT-valT-lysW 0.152 362
rpsB-tsf,rpsB-tsf-pyrH-frr 0.152 363
setC 0.151 364
yphD-yphE-yphF 0.151 365
gltF 0.150 366
pbl 0.150 367
ygeI 0.150 368
nei 0.150 369
hcaT 0.150 370
yhjY 0.148 371
tag-yiaC 0.148 372
ileY 0.148 373
speB-speA 0.148 374
yqgC 0.148 374
speB-speA-yqgB,yqgB 0.148 376
yqgG 0.148 377
pepD 0.147 378
gpt-frsA,gpt 0.147 378
ypjC 0.147 380
yegW 0.147 381
rydB 0.147 382
gadX,gadW-gadX 0.146 383
ydiL 0.145 384
ydiM 0.145 385
guaD-ghxQ 0.145 386
lon-hupB,lon 0.145 387
sraA 0.145 388
yehF 0.144 389
yieE,yieE-chrR 0.143 390
rbsD-rbsA-rbsC-rbsB,rbsD-rbsA-rbsC-rbsB-rbsK-rbsR 0.143 391
aroH 0.143 392
glgS 0.143 393
yqiJ-yqiK 0.143 393
yiiS-uspD 0.143 395
IS129 0.142 396
cusS-cusR 0.142 397
cusC-cusF,cusC-cusF-cusB-cusA 0.142 398
astE-astB-astD-astA-astC 0.142 399
xthA 0.142 400
ynjI 0.141 401
sbmC,yeeX-yeeA-sbmC,yeeA-sbmC 0.141 402
ylcH 0.140 403
ygjV 0.140 404
gstB 0.140 405
dacC 0.140 405
yohF 0.139 407
yfiE 0.138 408
eamB 0.138 408
cyaA 0.138 410
hemY-hemX-hemD-hemC,hemD-hemC,hemX-hemD-hemC 0.138 411
bamB-yfgM-hisS,hisS 0.138 412
ycjM-ycjN-ycjO-ycjP-ycjQ-ycjR-ycjS-ycjT-ycjU-ycjV-ompG-ymjB 0.138 413
ynfA 0.138 414
lpp 0.137 415
sibC 0.137 416
marC 0.137 417
marR-marA-marB 0.137 418
yoeF 0.137 419
hcaR-iroK 0.136 420
trpS-gph-rpe,gph-rpe 0.135 421
yoaL 0.135 422
manX-manY-manZ,manX-manY-manZ-yobD 0.135 423
yoaE 0.135 424
rpsP5p 0.135 425
yahV 0.135 426
lnt-ybeX-ybeY-ybeZ,ybeX-ybeY-ybeZ,ybeY-ybeZ 0.135 427
yaiL 0.134 428
hdhA,uidR-hdhA 0.133 429
yeiR-lpxT 0.133 430
ylcJ 0.131 431
ybcK 0.131 431
ybeT 0.130 433
ybeU-djlC 0.130 433
ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA 0.130 435
yceD-rpmF-plsX-fabH-fabD,yceD-rpmF-plsX-fabH,yceD-rpmF 0.130 436
sraB 0.130 437
yceF 0.130 438
yadN 0.130 439
yidA 0.129 440
rclC-rclB-rclA 0.129 441
ykgD 0.129 441
ssuB-ssuC-ssuD-ssuA-ssuE 0.128 443
elfA 0.128 443
ratB-ratA 0.128 445
smpB-ssrA,smpB 0.128 445
obgE-yhbE 0.127 447
thrB-thrC,thrB 0.127 448
ycgL 0.127 449
yedY-yedZ 0.127 450
yedV-yedW,yedW 0.127 451
hiuH,hiuH-yedY-yedZ,hiuH-yedY-yedZ-zinT 0.127 451
hscB-iscA-iscU-iscS-iscR,iscA-iscU-iscS-iscR 0.125 453
iscA-iscU-iscS 0.125 454
ycjZ 0.124 455
mpaA-ycjY-ymjC-ymjD,ycjY 0.124 456
ybgD 0.124 457
cysQ-ytfI,cysQ 0.124 458
codA 0.123 459
sfmC-sfmD 0.123 460
intD 0.123 461
xisD 0.123 462
minE-minD-minC 0.123 463
ycgJ 0.123 464
rpsK-rpsM-rpmJ-secY-rplO 0.123 465
rpsD-rpsK-rpsM-rpmJ-secY-rplO-rpmD 0.123 465
minE-minD 0.122 467
nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC,nnr-tsaE-amiB 0.121 468
spy 0.121 469
ligB 0.121 470
gmk-rpoZ-spoT-trmH,gmk 0.121 471
inaA-glpQ-glpT,glpQ-glpT 0.120 472
glpA-glpB,glpA-glpB-glpC 0.120 472
yijD 0.120 474
lpd 0.120 475
yncL 0.120 476
ydcX 0.120 477
ydcY 0.120 477
hda 0.119 479
yodB 0.119 480
yfbN 0.117 482
yfbO 0.117 482
yfbP 0.117 482
cirA 0.117 484
yadG-yadH-yadI,yadG-yadH 0.116 485
ybaE 0.116 486
cof 0.116 487
ygeH 0.116 488
yagL-yagM 0.116 489
dcuC 0.115 490
lysP-yeiE,yeiE 0.114 491
yhbW 0.114 492
yciE-yciF-yciG,yciG 0.114 493
cueO 0.114 494
speD-speE-yacC,yacC 0.114 495
syd 0.113 496
ykgA 0.113 497
yoaC 0.113 498
ascG,hydN-ascG 0.113 499
ascF-ascB 0.113 500
btuC-ihfA,ihfA 0.113 501
insH21 0.113 502
trkG 0.112 503
cysZ,cysZ-cysK 0.112 504
ligA-zipA-ypeB,ligA-zipA,zipA 0.112 505
cysS 0.111 506
purK-purE-lpxH-ppiB,lpxH-ppiB,ppiB 0.111 507
yneP 0.111 508
yqhA 0.111 509
yghA 0.111 509
rfaH 0.111 511
ubiD-fre,ubiD 0.111 511
fucO-fucA 0.110 513
fucP-fucI-fucK-fucU-fucR 0.110 514
yieK-yieL-bglH 0.109 515
mprA-emrA-emrB 0.109 516
ridA 0.109 517
allE-allC-allD 0.109 518
fdrA-ylbF-ybcF-ylbE 0.109 519
mug-yqjH,yqjH 0.108 520
asr 0.108 521
dedA-truA-usg-pdxB,truA-usg-pdxB,pdxB 0.108 522
tus 0.108 523
yfjJ 0.105 524
argI 0.105 525
yhjC,yhjC-yhjD 0.105 526
kdpE 0.104 527
queC 0.104 528
ratB 0.104 529
hsdS-hsdM,hsdM 0.104 530
yojI 0.103 531
yfiR-yfiN-yfiB,yfiR-yfiN 0.103 532
yceI-yceJ 0.103 533
sdaA,sdaA-yoaD 0.103 534
hisP-hisM-hisQ-hisJ 0.103 535
yqhJ 0.102 536
yafF 0.102 537
yafU 0.102 538
arrS 0.102 539
gadE-gadF,gadE-mdtE-mdtF-gadF 0.102 539
nanR 0.102 541
dcuD 0.102 541
yjhP 0.102 543
dicB-ydfD-ydfE-insD-7-intQ 0.102 544
yddJ-yddK-yddL 0.102 545
yjeI 0.101 546
yeaI 0.101 547
hyuA 0.101 548