Top Promoters Bound by allR

On this page you can access the list of promoter regions bound by allR. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
gcl-hyi-glxR-ybbW-allB-ybbY-glxK 1.000 1
allA 0.903 2
allS 0.903 3
purN,purN-ppk 0.239 4
rhtA 0.233 5
ompX-yliM 0.233 5
ompX 0.233 7
ydiN-ydiB-aroD 0.221 8
yibY 0.218 9
yibX 0.218 10
sixA 0.216 11
obgE 0.214 12
yhjC,yhjC-yhjD 0.201 13
alsE-alsC-alsA-alsB 0.195 14
acpP-fabF-pabC,acpP,acpP-fabF-pabC-yceG,acpP-fabF 0.174 15
fabF 0.174 16
uspG 0.174 17
queE 0.171 18
ygcG 0.171 18
rnd 0.170 20
proA-thrW 0.166 21
pflB 0.163 22
ansB 0.163 23
gpt-frsA,gpt 0.158 24
pepD 0.158 25
rseC-rseB-rseA,rseA 0.157 26
dut-ttk 0.156 27
yfaY 0.155 28
ybcV 0.155 29
ybcW 0.155 29
yhcC5p 0.153 31
hflD-mnmA-nudJ 0.153 32
yldA 0.150 33
dapD,yaeI-dapD,yaeH-yaeI-dapD 0.140 34
gmhB-rrsH,gmhB 0.139 35
rraA-menA,menA 0.139 36
ygiN 0.138 37
cyoD-cyoC-cyoB,cyoB,cyoC-cyoB,cyoE-cyoD-cyoC-cyoB 0.138 38
rplQ-rpoA-rpsD-rpsK-rpsM-rpmJ 0.135 39
yigF-yigG 0.133 40
fbaB 0.132 41
yegT-yegU-yegV 0.132 41
ygbF 0.132 43
hokA 0.131 44
insJ 0.131 45
insJK 0.131 45
ysaE 0.131 47
yfcI 0.130 48
fabH-fabD-fabG,fabH-fabD-fabG-acpP 0.129 49
tpx 0.128 50
rhtC 0.127 51
hscA,iscX-fdx-hscA 0.126 52
kup 0.126 53
viaA-ravA 0.126 54
yhaB-yhaC 0.125 55
yihG 0.124 56
yebQ 0.122 57
ynaM 0.122 58
gstB 0.121 59
dacC 0.121 59
metZ-metW-metV 0.119 61
mltA 0.119 62
rhmA-rhmT-rhmD-yfaX,rhmD-yfaX 0.119 63
iraP-phoA,iraP 0.119 64
ddlA 0.119 65
chbR 0.118 66
yqfB 0.115 67
bglA 0.115 68
fumA,fumC-fumA 0.113 69
manA,manA-ydgA 0.113 69
rplK-rplA-rplJ-rplL,rplK-rplA-rplJ-rplL-rpoB-rpoC 0.112 71
psuG-psuK 0.111 72
yohC 0.111 73
yohD 0.111 74
bglG,bglB-bglF-bglG 0.111 75
tgt-yajC,tgt-yajC-secD 0.110 76
rihC,rihC-dapB 0.109 77
yeaY 0.109 78
lysP-yeiE,yeiE 0.109 79
yeiH 0.109 80
yghB 0.109 81
nupG 0.108 82
sroH 0.107 83
aroD-ydiF,aroD 0.106 84
yibT 0.106 85
yibL 0.106 85
rnhA,gloB-rnhA 0.105 87
serT 0.105 88
hyaA-hyaB-hyaC-hyaD-hyaE-hyaF 0.105 88
yhgE 0.105 90
pck 0.105 90
uidC-uidB-uidA 0.104 92
flk 0.102 93
yqjA-mzrA,yqjA-mzrA-yqjC-yqjD 0.102 94
pheM-rplT-rpmI-infC,rplT-rpmI-infC,infC 0.101 95
cyaR 0.101 96
lplT-aas 0.100 97
yfdE-yfdV-oxc-frc-yfdX 0.100 98
ypdI 0.100 98
yecN-cmoA-cmoB 0.100 100
cmoA-cmoB 0.100 101
ldtB 0.100 102
ybiT 0.100 102