Top Promoters Bound by fimZ

On this page you can access the list of promoter regions bound by fimZ. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs)	Scores	Ranks

allE-allC-allD	1.000	1
fdrA-ylbF-ybcF-ylbE	1.000	1
nhaR	0.836	3
ytjC	0.818	4
yjjX	0.818	5
emrD	0.723	6
ysdE	0.723	7
ydcX	0.687	8
yncL	0.687	9
ydcY	0.687	9
rcnB	0.683	11
hemL	0.657	13
yadX	0.657	13
clcA-erpA,clcA	0.657	13
hycI-hycH-hycG-hycF-hycE-hycD-hycC-hycB-hycA	0.612	15
hypA-hypB-hypC-hypD-hypE-fhlA,hypA-hypB-hypC-hypD-hypE	0.612	16
hypB-hypC-hypD-hypE-fhlA,hypB-hypC-hypD-hypE	0.612	16
prfC	0.563	18
ybhR-ybhS-ybhF-ybhG-ybiH,ybhF-ybhG-ybiH	0.561	19
rhlE	0.561	20
ihfA-pheT-pheS-pheM,pheM	0.550	21
rhsE-ydcD	0.538	22
stpA	0.516	23
alaE	0.516	24
nudE	0.496	25
yrfF	0.496	25
sibC	0.480	27
mreD-mreC-mreB,yhdE-mreD-mreC-mreB,mreB	0.478	28
rrlB-rrfB,rrlB	0.472	29
sspB-sspA	0.472	30
smf	0.432	31
def-fmt-rsmB,def-fmt,def-fmt-rsmB-trkA	0.432	32
yhjA	0.424	33
treF	0.424	33
yaaX	0.417	35
yjgA	0.412	36
pmbA	0.412	37
ybcN-ninE-ybcO-rusA-ylcG	0.411	38
yhiD-hdeB-hdeA,hdeB-hdeA	0.405	39
hdeD	0.405	39
sraA	0.403	41
lon-hupB,lon	0.403	42
cysG	0.402	43
gapC	0.385	44
cybB,cybB-ydcA-sokB	0.385	45
yoaD	0.381	46
yghD-yghE	0.376	47
yhdV	0.363	48
yddB-yddA,yddA	0.361	49
yebO,cspC-yobF-yebO	0.360	50
ykiE	0.352	51
insA-7	0.352	51
fecA-fecR-fecI,fecR-fecI	0.352	53
yobH	0.346	54
yebO-mgrB,mgrB	0.346	55
hns	0.345	56
frwC-frwB	0.339	57
gldA-fsaB-frwA	0.339	58
trpS-gph-rpe-dam-damX-aroB-aroK,dam-damX-aroB-aroK,damX-aroB-aroK	0.337	59
frwD	0.332	60
yacM	0.325	61
guaC	0.325	62
yacG-zapD-coaE	0.325	63
wzxB-rfbC-rfbA-rfbD-rfbB,rfbC-rfbA-rfbD-rfbB	0.322	64
hupA,hupA-yjaH	0.317	65
yjaH	0.317	66
ygaU	0.317	67
ygaV-ygaP	0.317	68
yqaE,ygaU-yqaE	0.317	69
yajR	0.316	70
torR	0.316	71
torC-torA-torD	0.316	72
nrdH-nrdI-nrdE-nrdF	0.314	73
yqcA-truC-yqcC	0.313	74
truC-yqcC-csrB	0.313	75
yiaU	0.312	76
yiaT	0.312	77
uidC-uidB-uidA	0.307	78
yjaZ	0.304	79
yqhD-dkgA	0.295	80
yqhC	0.295	81
ilvE-ilvD,ilvE-ilvD-ilvA	0.294	82
htpG,htpG-adk	0.292	83
yjhU	0.286	84
treR	0.285	85
yecJ-azuC,azuC	0.284	86
yecR	0.284	86
yecJ	0.283	88
sixA	0.283	89
ycgH	0.282	90
yncE	0.279	91
yncD	0.279	92
rybA-mntS	0.272	93
mntR,mntR-ybiR	0.272	94
opgE	0.272	95
ompA	0.268	96
rob	0.265	97
creA-creB-creC,creA-creB,creA-creB-creC-creD	0.265	97
ftnA	0.264	99
ldtC	0.264	100
ycfQ	0.263	101
yihI,yihI-hemN	0.257	102
yihA	0.257	103
csrC	0.257	103
tufA-fusA	0.256	105
lipB	0.255	106
ompG	0.254	107
iclR	0.251	108
metH	0.251	108
frvR-frvX-frvB-frvA	0.251	110
ilvA	0.250	111
nrdG	0.247	112
yeaC-msrB,msrB	0.247	113
gapA,gapA-yeaD	0.247	114
yfgA-rlmN,rlmN	0.246	115
cusS-cusR	0.245	116
cusC-cusF,cusC-cusF-cusB-cusA	0.245	117
guaD-ghxQ	0.244	118
wcaB-wcaA-wzc-wzb-wza	0.242	119
yegH	0.242	120
nagE	0.237	121
umpH-nagC-nagA-nagB,nagC-nagA-nagB	0.237	122
bhsA	0.233	123
ygcU	0.233	124
ftsN-cytR,cytR	0.228	125
allA	0.226	126
allS	0.226	127
cadA-cadB	0.223	128
yaeH	0.222	129
allR,allR-gcl-hyi	0.221	130
yfbM	0.221	131
gcvP	0.220	132
aldA	0.217	133
pabB-nudL	0.216	134
ryfD	0.215	135
clpB	0.215	136
yneO	0.211	137
ymgF	0.211	138
yjhZ	0.205	139
yjhR	0.205	140
csiE	0.203	141
adeQ	0.203	142
adeD	0.203	143
pspE	0.199	144
trpS-gph-rpe-dam	0.199	145
psuG-psuK	0.199	146
nudG-gdhA,nudG	0.199	147
ynjF	0.199	148
yccE	0.198	149
cbpM-cbpA	0.198	150
rrlH-rrfH	0.196	151
ytfE	0.194	152
yneJ	0.193	153
yneG-glsB-sad,sad	0.193	154
yibH-yibI	0.193	155
mtlA,mtlA-mtlD-mtlR	0.193	156
ycaP	0.190	157
ycbX	0.189	158
rlmL,rlmL-uup	0.189	158
cysZ,cysZ-cysK	0.189	160
ligA-zipA-ypeB,ligA-zipA,zipA	0.189	161
dcrB	0.188	162
ynaE	0.183	163
ynaM	0.183	163
yphD-yphE-yphF	0.180	165
yrhA	0.180	166
mpaA	0.179	167
mgrR	0.179	168
yahV	0.178	169
yahA	0.178	170
oppA-oppB-oppC-oppD-oppF,oppA-oppB,oppA-oppB-oppC	0.177	171
zipA5p	0.176	172
mgtA-mgtL	0.174	173
hcaT	0.173	174
dcuR	0.172	175
ppiC	0.171	176
yibS	0.170	177
mnmH,ylbG-mnmH	0.170	178
yfiR-yfiN-yfiB,yfiR-yfiN	0.170	179
yihQ	0.169	180
yfdV	0.168	181
fumB-dcuB	0.167	182
dinI	0.167	183
uspF	0.167	184
ydiF-ydiO	0.165	185
ynfA	0.164	186
ynfB-speG	0.164	186
glgB-asd,asd	0.162	188
yhgN	0.162	188
yqeB	0.161	190
dtpC	0.160	191
fadD-yeaY-tsaB,yeaY-tsaB	0.159	192
yafT	0.159	193
rrfD-rrlD	0.156	194
sdsR,pphA-sdsR	0.156	195
ybcK	0.156	196
yciE-yciF-yciG,yciG	0.155	197
dsrA	0.155	198
yedP	0.155	199
dsrB	0.155	200
ampD-ampE	0.155	201
otsA-otsB	0.154	202
tktB	0.154	203
yffL	0.154	204
yegW-yegX-thiD-thiM,thiD-thiM	0.154	205
yneP	0.151	206
ftsZ,ftsZ-lpxC-secM,ftsZ-lpxC	0.151	207
yehF	0.151	208
matA	0.149	209
parC,plsC-parC	0.149	210
cadC	0.148	211
thyA	0.148	212
rrlA-rrfA,rrlA	0.148	213
rrlE,rrlE-rrfE	0.148	213
adiY	0.147	215
yagP	0.147	216
nc1	0.147	217
yafV	0.146	218
ykgH	0.146	219
ygaY	0.145	220
sufD-sufC-sufB-sufA,sufE-sufS-sufD-sufC-sufB-sufA	0.145	221
rydB	0.145	222
yegW	0.144	223
argW	0.144	224
intS-gtrA,intS-gtrA-gtrB,intS	0.144	225
yedQ	0.144	226
yodC	0.144	226
lpxD	0.143	228
yfbU-yfbV,yfbV	0.141	229
ackA,ackA-pta	0.141	230
dauA-prsA,prsA	0.141	231
ydeP	0.141	232
yghF	0.141	233
yjcE	0.138	234
ubiF	0.136	235
yjfP	0.135	236
bsmA	0.135	237
gcvH-gcvT,gcvP-gcvH-gcvT	0.135	238
yqfI	0.135	238
yjdF	0.135	240
sstT	0.134	241
ampC	0.134	242
yeaC	0.133	243
ybjH	0.131	244
yeeL	0.130	245
shiA-amn,shiA	0.130	245
pdxY	0.130	247
yahO	0.130	248
yahN	0.130	249
lolC-lolD-lolE,lolC-lolD-lolE-nagK	0.130	250
ycfT	0.130	251
ygfK-ssnA	0.130	252
metR	0.129	253
metE	0.129	254
ygeK-ygeL	0.129	255
adhP	0.129	256
soxS	0.128	257
soxR	0.128	258
yrhB	0.128	259
yrhD	0.128	260
gpmA	0.127	261
yfjH	0.126	262
yfjI	0.126	262
mscL	0.125	264
ebgA-ebgC	0.124	265
yihF	0.124	266
alaC	0.124	267
ypdA-ypdB-ypdC	0.124	268
yhjY	0.122	269
tag-yiaC	0.122	270
yihD,yihD-srkA-dsbA,yihD-srkA	0.122	271
mobB-mobA	0.122	272
srkA-dsbA	0.122	273
ybjQ-amiD	0.122	274
slyD	0.120	275
ydbH-ynbE-ydbL	0.120	276
hslJ-ldhA,ldhA	0.120	277
ybfQ	0.119	278
aroH	0.118	279
kefF-kefC,kefF-kefC-folA	0.118	280
ydhZ	0.118	281
argA	0.116	282
amiC	0.116	283
yadC-yadK-yadL-yadM	0.116	284
ribB	0.115	285
yqiC,yqiC-ygiL	0.115	285
ygiB-ygiC	0.115	287
acnA-ymiC	0.115	288
acnA	0.115	288
ugpQ	0.115	290
ykgE-ykgF-ykgG	0.115	291
pyrF-yciH	0.115	292
yihW	0.114	293
pflB	0.114	294
rpiB,rpiB-yjdP	0.113	295
alsE-alsC-alsA-alsB-rpiR,alsA-alsB-rpiR,alsB-rpiR,rpiR	0.113	296
glmS-glmU	0.113	297
yaaJ	0.113	298
talB,talB-mog	0.113	298
ynfM	0.113	300
yabI	0.112	301
ycgV	0.112	302
rplY	0.111	303
ydfK-ynfT	0.111	304
zntR-yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,yhdN-rplQ-rpoA-rpsD-rpsK-rpsM,rplQ-rpoA-rpsD-rpsK-rpsM	0.110	305
rsmF-yebV,rsmF	0.110	306
cysC-cysN-cysD,ftsB-ygbE-cysC-cysN-cysD	0.110	307
iap	0.110	307
dksA,pcnB-gluQ-dksA,gluQ-dksA	0.110	309
yicH	0.110	310
tatA-tatB-tatC-tatD,tatA-tatB-tatC	0.109	311
hybG-hybF-hybE-hybD-hybC	0.109	312
insB-1-insA-1-insAB1	0.109	313
livF-livG-livM-livH-livK,livG-livM-livH-livK,livM-livH-livK	0.108	314
panM	0.108	315
cysK-ptsH-ptsI-crr,cysK-ptsH,cysK	0.108	316
yjbB	0.107	317
nrdR-ribD-ribE-nusB-thiL,nrdR-ribD-ribE-nusB-thiL-pgpA	0.106	318
phoE	0.106	319
proB,proB-proA,proB-proA-thrW	0.106	319
yffM-yffN	0.106	321
yhcF	0.105	322
insH-10	0.105	323
argQ	0.102	324
hybG-hybF-hybE-hybD-hybC-hybB-hybA-hybO,hybB-hybA-hybO,hybA-hybO	0.102	325
nlpC,ydiV-nlpC	0.100	326