Top Promoters Bound by lldR

On this page you can access the list of promoter regions bound by lldR. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
lldP-lldR-lldD 1.000 1
yihD,yihD-srkA-dsbA,yihD-srkA 0.595 2
wecA-wzzE-wecB-wecC-rffG-rffH-wecD-wecE-wzxE-wzyE-wecG-wecF,wecA-wzzE,wecA-wzzE-wecB 0.522 3
ppsA 0.518 4
ydiA-aroH,ydiA 0.518 4
dsbB 0.465 6
yfdF 0.463 7
ubiX-purF-cvpA,purF-cvpA 0.431 8
ldtB 0.407 9
ansB 0.392 10
rlmH-rsfS-cobC-nadD,nadD 0.383 11
gltB-gltD-gltF 0.381 12
ivy 0.340 13
yafV 0.340 14
yfjL,yfjK-yfjL 0.337 15
elaB 0.334 16
menE-menC-menB-menH-menD-menF,menH-menD-menF,menD-menF 0.334 17
ogt 0.312 18
ispF-ispD 0.310 19
ftsB,truD-ispF-ispD-ftsB,umpG-truD-ispF-ispD-ftsB,pcm-umpG-truD-ispF-ispD-ftsB 0.310 19
yieK-yieL-bglH 0.307 21
roxA 0.297 22
yedK 0.294 23
yobI 0.291 24
yibS 0.291 25
yebO,cspC-yobF-yebO 0.283 26
yobH 0.283 26
yebO-mgrB,mgrB 0.283 28
amiC 0.283 29
argA 0.283 30
yqcA-truC-yqcC 0.281 31
narK 0.278 32
yggI 0.278 33
yhcN 0.263 34
eutP-eutS-maeB,maeB 0.262 35
talA-tktB,talA 0.262 36
betA-betB-betI 0.256 37
betT 0.256 38
rdgB-yggW 0.255 39
hscA-hscB-iscA 0.252 40
uidR 0.247 41
hemB 0.246 42
araD-araA-araB,araA-araB 0.246 43
araC,araC-yabI 0.246 43
yaiT 0.245 45
yeaD 0.241 46
aslA 0.237 47
lgt-ptsP-rppH,ptsP-rppH 0.235 48
preT-preA 0.234 49
yqjA-mzrA,yqjA-mzrA-yqjC-yqjD 0.233 50
yqiM 0.233 51
cbrC 0.229 52
argH 0.229 53
ybjS 0.226 54
hyuA 0.225 55
mrdA-rlmH-rsfS,rlmH-rsfS,mrdB-mrdA-rlmH-rsfS,rlpA-mrdB-mrdA-rlmH-rsfS 0.220 56
rpoS 0.217 57
ebgA-ebgC 0.211 58
yfaE 0.210 59
atoD-atoA-atoE-atoB 0.210 60
nagE 0.209 61
umpH-nagC-nagA-nagB,nagC-nagA-nagB 0.209 62
fliY-fliZ-fliA 0.202 63
folP-ftsH,ftsH 0.201 64
dmsC 0.198 65
ecpE-ecpD-ecpC-ecpB 0.197 66
alpA 0.194 67
yfjH 0.194 68
yfjI 0.194 69
fadJ-fadI 0.193 70
hdfR 0.192 71
artJ 0.192 72
yhgO 0.190 73
yhgP 0.190 73
G0-10706 0.190 75
ytfL 0.190 76
ytfI 0.189 77
mreD-mreC 0.182 78
aroL-yaiA-aroM,aroL-yaiA 0.182 79
yfeX 0.181 80
hscB-iscA-iscU-iscS-iscR,iscA-iscU-iscS-iscR 0.180 81
yheS-yheT-yheU-prkB,yheS-yheT-yheU 0.178 82
paoD-paoC-paoB-paoA 0.178 83
yagU 0.178 84
rpoS-nlpD 0.178 85
mngB 0.178 86
arpA 0.176 87
ybiJ 0.176 88
ompG 0.175 89
lspA-fkpB-ispH 0.175 90
modA-modB-modC,modA 0.174 91
lit 0.173 92
ymfD-ymfE 0.173 93
der-bamB 0.172 94
ydaG-ydaF 0.172 95
ffs 0.169 96
ybaZ 0.169 97
ybaA 0.169 97
yjhB-yjhC 0.168 99
yjdF 0.167 100
proB,proB-proA,proB-proA-thrW 0.166 101
phoE 0.166 102
murI,murI-rrsB-gltT 0.165 103
add 0.164 104
yidC-mnmE,yidC 0.163 105
potF-potG-potH,potF-potG,potF-potG-potH-potI 0.161 106
yihW 0.160 107
pyrH-frr-dxr,pyrH-frr,pyrH 0.159 108
glnU-leuW-metT-asnB,asnB,glnW-glnU-leuW-metT-asnB 0.158 109
ssuB-ssuC-ssuD-ssuA-ssuE 0.156 110
elfA 0.156 110
fpr-glpX,glpX 0.156 112
insC-6-insD-6-insCD6 0.156 113
hemN 0.156 114
leuU 0.155 115
ybdK 0.154 117
sokE 0.154 117
hokE 0.154 117
insL-2 0.154 119
aroH 0.154 120
dtpA 0.154 121
tldD 0.154 122
clcB 0.153 123
rlmJ-gor,rlmJ-gor-agrA,rlmJ 0.152 124
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH,rplO-rpmD-rpsE-rplR-rplF-rpsH 0.152 125
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF 0.152 126
ybgU 0.150 128
sdhC-sdhD-sdhA-sdhB,sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX 0.150 128
sdhD-sdhA-sdhB 0.150 128
ybgV 0.150 130
tabA 0.150 131
cyaR 0.149 132
insZ 0.149 133
yahB 0.148 134
recJ-dsbC,prfB-recJ-dsbC,dsbC 0.147 135
lplT-aas 0.147 136
pal-ybgF-lysT-valT,pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,pal-ybgF-lysT-valT-lysW-valZ-lysY,pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,pal-ybgF-lysT-valT-lysW-valZ 0.144 137
mglC-mglA 0.144 138
ybcY 0.144 139
tfaX 0.144 140
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplR-rplF-rpsH-rpsN-rplE-rplX-rplN 0.144 141
ypfH 0.141 142
ydhT-ydhU-ydhX-ydhW-ydhV-ydhY,ydhW-ydhV-ydhY 0.141 143
ygbL-ygbM 0.140 144
ohsC 0.140 145
shoB 0.140 146
gyrA 0.140 147
ubiG 0.140 148
deoD 0.139 149
atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI 0.138 150
rrfG 0.138 151
dkgB 0.138 152
murB-birA 0.138 152
aspU 0.138 155
aspT 0.138 155
trpT 0.138 155
yjaA 0.138 155
kgtP 0.138 158
rrfC 0.138 159
gatD-gatC-gatB-gatA-gatZ-gatY,gatC-gatB-gatA-gatZ-gatY,gatB-gatA-gatZ-gatY 0.137 160
cheW-cheA-motB-motA 0.137 161
ung 0.136 162
grcA 0.136 163
macB 0.136 164
rybB 0.135 165
zupT 0.135 166
chiP-chiQ 0.135 167
rne 0.134 168
yceQ 0.134 169
rluC 0.134 170
yhhH 0.134 171
yfaD-ypaA 0.133 172
aat 0.132 173
mprA-emrA-emrB 0.132 174
yncJ 0.132 175
ydcQ-hicA 0.132 175
ndh 0.131 177
cybB,cybB-ydcA-sokB 0.131 178
ggt 0.130 179
yhhA 0.130 179
nuoN-nuoM 0.130 181
yceI-yceJ 0.130 182
lipB 0.130 183
nuoG 0.130 184
yoaG-yeaR 0.130 185
yraR,yraQ-yraR 0.129 186
yhiY 0.129 187
ybiE 0.129 188
yhcO 0.129 189
yejK 0.127 190
zapC 0.127 191
ykgE-ykgF-ykgG 0.126 192
chiA 0.126 193
thiH-thiG-thiF-thiE-thiC-thiS,thiE-thiC,thiF-thiE-thiC-thiS 0.125 194
nudC-hemE-nfi,nudC-hemE-nfi-yjaG-hupA 0.125 195
sthA 0.125 196
fabR-yijD 0.125 196
rpsI 0.125 198
tadA-pgpC 0.124 199
ybaV 0.124 200
yhbW 0.124 201
rcsC 0.123 202
atoS-atoC 0.123 203
rzpQ-rrrQ-ydfR-essQ 0.123 204
ynfU 0.123 205
hyaD-hyaE 0.123 206
yzgL-glgP,glgP 0.122 207
sbmC,yeeX-yeeA-sbmC,yeeA-sbmC 0.122 208
ygeA 0.120 209
yoaC 0.119 210
rnk-rna,rna 0.119 211
recC 0.119 212
hyaA-hyaB-hyaC-hyaD-hyaE-hyaF 0.118 213
lrhA 0.118 214
ycaL 0.117 215
pflB 0.117 216
dcuR-dcuS 0.117 217
ybhM 0.116 218
yncO 0.116 219
yncI 0.116 220
dtpB 0.116 221
glyT-thrT-tufB-secE-nusG,glyT-thrT-tufB 0.116 222
tufB,tufB-secE 0.116 223
thrU-tyrU-glyT-thrT-tufB-secE-nusG-rplK,thrU-tyrU-glyT-thrT-tufB-secE-nusG,thrU-tyrU-glyT-thrT-tufB 0.116 224
coaA 0.116 225
yhdJ 0.115 226
glpK 0.115 227
lpxM 0.115 228
nanS 0.114 229
ybdM 0.114 230
rhtC 0.113 231
yajC-secD,yajC,yajC-secD-secF 0.112 232
ttcA 0.112 233
nc6 0.112 234
ybeU-djlC 0.112 235
psiF 0.111 236
ytfK 0.110 237
ytfJ 0.110 238
mraZ-rsmH-ftsL,mraZ-rsmH-ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC 0.109 239
rsmH-ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC 0.109 240
entD-fepA,fepA 0.109 241
fes-entF-fepE-ybdZ,fes-ybdZ 0.109 242
fucO-fucA 0.109 243
yffS 0.109 244
esrE 0.109 245
gspB-gspA 0.109 246
gspC-gspD-gspE-gspF-gspG-gspH-gspI-gspJ-gspK-gspL-gspM-gspO 0.109 246
pyrD 0.108 248
thiI 0.108 249
lpxC,lpxC-secM 0.108 250
selB-selA 0.108 251
glvG-glvB-glvC 0.107 252
yidP 0.107 252
hemY-hemX 0.107 254
ppa 0.107 255
ytfQ-ytfT-yjfF-ytfR 0.107 255
ugd 0.107 257
tpx 0.106 258
ycjG 0.106 259
menE-menC-menB 0.106 260
osmE 0.105 261
nadE,nadE-cho 0.105 262
rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB,rpsQ-rpmC-rplP-rpsC-rplV-rpsS-rplB 0.105 263
fadM 0.104 264
degQ,degQ-degS 0.104 265
ftsZ,ftsZ-lpxC-secM,ftsZ-lpxC 0.104 266
yibX 0.104 267
yibY 0.104 268
yneL-hipA-hipB,hipA-hipB 0.104 269
ypjI 0.104 270
ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA 0.104 271
rhtB 0.103 272
pldB-yigL 0.103 272
yccX 0.103 274
hspQ-rlmI,rlmI 0.103 275
kdpE 0.103 276
yfhL 0.102 277
proL 0.102 278
rpsI-rplM-zapE,zapE 0.102 279
yhcB,yhcB-degQ 0.102 280
insG 0.102 281
yjiN-mdtM 0.101 282
yjiP 0.101 283
mrr 0.101 284
hsdS-hsdM-hsdR,hsdR 0.101 285
dsdX-dsdA 0.100 286
dsdC 0.100 287