Top Promoters Bound by lldR

On this page you can access the list of promoter regions bound by lldR. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
lldP-lldR-lldD 1.000 1
yihD,yihD-srkA-dsbA,yihD-srkA 0.595 2
wecA-wzzE-wecB-wecC-rffG-rffH-wecD-wecE-wzxE-wzyE-wecG-wecF,wecA-wzzE,wecA-wzzE-wecB 0.522 3
ppsA 0.518 4
ydiA-aroH,ydiA 0.518 4
dsbB 0.465 6
yfdF 0.463 7
ubiX-purF-cvpA,purF-cvpA 0.431 8
ldtB 0.407 9
ansB 0.392 10
rlmH-rsfS-cobC-nadD,nadD 0.383 11
gltB-gltD-gltF 0.381 12
yafV 0.340 13
ivy 0.340 13
yfjL,yfjK-yfjL 0.337 15
menE-menC-menB-menH-menD-menF,menH-menD-menF,menD-menF 0.334 16
elaB 0.334 16
ogt 0.312 18
ispF-ispD 0.310 19
ftsB,truD-ispF-ispD-ftsB,umpG-truD-ispF-ispD-ftsB,pcm-umpG-truD-ispF-ispD-ftsB 0.310 19
yieK-yieL-bglH 0.307 21
roxA 0.297 22
yedK 0.294 23
yobI 0.291 24
yibS 0.291 25
yebO,cspC-yobF-yebO 0.283 27
yebO-mgrB,mgrB 0.283 27
yobH 0.283 27
amiC 0.283 29
argA 0.283 29
yqcA-truC-yqcC 0.281 31
narK 0.278 32
yggI 0.278 33
yhcN 0.263 34
eutP-eutS-maeB,maeB 0.262 35
talA-tktB,talA 0.262 35
betA-betB-betI 0.256 37
betT 0.256 37
rdgB-yggW 0.255 39
hscA-hscB-iscA 0.252 40
uidR 0.247 41
hemB 0.246 42
araD-araA-araB,araA-araB 0.246 43
araC,araC-yabI 0.246 43
yaiT 0.245 45
yeaD 0.241 46
aslA 0.237 47
lgt-ptsP-rppH,ptsP-rppH 0.235 48
preT-preA 0.234 49
yqiM 0.233 50
yqjA-mzrA,yqjA-mzrA-yqjC-yqjD 0.233 50
cbrC 0.229 52
argH 0.229 53
ybjS 0.226 54
hyuA 0.225 55
mrdA-rlmH-rsfS,rlmH-rsfS,mrdB-mrdA-rlmH-rsfS,rlpA-mrdB-mrdA-rlmH-rsfS 0.220 56
rpoS 0.217 57
ebgA-ebgC 0.211 58
yfaE 0.210 59
atoD-atoA-atoE-atoB 0.210 60
umpH-nagC-nagA-nagB,nagC-nagA-nagB 0.209 61
nagE 0.209 61
fliY-fliZ-fliA 0.202 63
folP-ftsH,ftsH 0.201 64