Top Promoters Bound by matA

On this page you can access the list of promoter regions bound by matA. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
matA 1.000 1
ykgL 1.000 2
hemF 0.766 3
pabC-yceG-tmk,pabC-yceG-tmk-holB-ycfH 0.658 4
bisC 0.495 5
yiaD 0.495 6
dapE-ypfN 0.413 7
ynjF 0.308 8
pgpA 0.296 9
ogt-abgT-abgB-abgA 0.292 10
abgR 0.292 11
plaP 0.290 12
plaP-yoeI 0.290 12
yphB-yphC 0.276 14
yphD-yphE-yphF 0.263 15
argC-argB-argH 0.261 16
ttdA-ttdB-ttdT 0.242 17
yafU 0.241 18
alkB 0.219 19
gltX 0.218 20
valU-valX-valY-lysV 0.218 20
yedK 0.217 22
yneE 0.210 23
ymcE-gnsA 0.204 24
gnsA 0.203 25
mcrA 0.200 26
hemY-hemX-hemD-hemC,hemD-hemC,hemX-hemD-hemC 0.199 27
cyaA 0.199 28
grxA 0.197 29
ybjC-nfsA-rimK-ybjN 0.197 30
aidB 0.195 31
yidB-gyrB,gyrB 0.195 32
fliE 0.192 33
fliF-fliG-fliH-fliI-fliJ-fliK 0.192 34
thyA 0.189 35
ybaL 0.184 36
recF-dnaN 0.183 37
ycgM,ycgM-ycgN 0.183 38
cysE-gpsA-secB-grxC,grxC 0.182 39
gpsA-secB,cysE-gpsA-secB 0.182 40
nfi-yjaG-hupA 0.180 41
ynjA 0.177 42
yhfL 0.174 43
thiI 0.174 44
yajO-dxs-ispA-xseB,dxs-ispA-xseB 0.174 45
ybjP 0.172 46
yihN 0.172 47
dusA-pspG,dusA 0.171 48
dicB-ydfD-ydfE-insD-7-intQ 0.171 49
secM-secA-mutT,secM-secA,secM 0.171 50
allE-allC-allD 0.170 51
fdrA-ylbF-ybcF-ylbE 0.170 51
mgrR 0.164 53
yneM 0.164 54
mgtT 0.164 54
arpA 0.159 56
arrS 0.146 57
gadE-gadF,gadE-mdtE-mdtF-gadF 0.146 57
yjeM,yjeM-yjeN-yjeO 0.146 59
fsr 0.146 60
ushA 0.146 60
nfrA-nfrB,nfrB 0.145 62
yedN 0.144 63
intG 0.144 64
umpH 0.143 65
acpT 0.142 66
lgt,ppdA-thyA-lgt,thyA-lgt 0.141 67
alx 0.141 68
yecF 0.140 69
yhiY 0.138 70
yhhJ-rbbA-yhiI,rbbA-yhiI 0.138 71
folK-pcnB 0.137 72
ygbN 0.137 73
yadG-yadH-yadI,yadG-yadH 0.136 74
can 0.136 75
ypjC 0.134 76
ypjB 0.134 77
lpxT 0.134 78
yiaB 0.132 79
kefB-kefG-yheV,kefG 0.132 80
yheS-yheT-yheU-prkB,yheS-yheT-yheU 0.132 81
dtpA 0.132 82
csrC 0.131 83
yihA 0.131 84
ykgR 0.131 85
ylbG 0.128 86
ebgA-ebgC 0.127 87
yhcN 0.127 88
yhfS-yhfT-yhfU-php-yhfW-yhfX 0.127 89
ypjA 0.125 90
rclC-rclB 0.123 91
deoR-ybjG,ybjG 0.123 92
mdfA 0.123 92
mnmG-mioC-asnC,mioC-asnC,asnC 0.123 94
asnA 0.123 95
ygiN 0.123 96
nc2 0.122 97
hemH 0.122 98
oppA-oppB-oppC-oppD-oppF,oppA-oppB,oppA-oppB-oppC 0.121 99
rcnB 0.121 100
osmE 0.120 101
yfaL 0.119 102
ypaB 0.119 103
nrdA-nrdB-yfaE 0.119 104
metB-metL 0.119 105
yiiX-metJ,metJ 0.119 106
ymgL 0.119 107
clpB 0.117 108
ryfD 0.117 109
relA,mazE-relA,mazG-mazF-mazE-relA,mazF-mazE-relA 0.117 110
ymgA-ariR 0.116 111
bluF 0.116 112
ycgZ-ymgA-ariR-ymgC,ycgZ 0.116 112
iraD-idlP 0.116 114
lipA 0.116 115
yagL-yagM 0.115 116
yicG 0.115 117
zwf 0.114 118
yebK-pykA,yebK 0.114 118
insH-4,insH-4-ynaJ 0.114 120
skp-lpxD,skp-lpxD-fabZ-lpxA,skp-lpxD-fabZ-lpxA-lpxB 0.112 121
yciO 0.112 122
adiA 0.110 123
ykgV 0.108 124
yagN 0.108 125
xanP-yicH,xanP 0.108 126
dsbB-nhaB,nhaB 0.108 127
ydcK 0.108 128
tehA-tehB,tehA 0.108 128
topB-selD-ydjA 0.107 130
sppA,sppA-ansA 0.107 131
lpxD 0.107 132
yhjX 0.106 133
rplX-rplN-rpsQ-rpmC 0.105 134
aqpZ 0.105 135
ybjD 0.105 135
yeaK-yeaL,yeaK 0.104 137
topB-selD 0.104 138
agp 0.104 139
ylcH 0.102 140
araG-araF-araH 0.101 141
asnW 0.101 142
yfdK-yfdL-yfdM-yfdN-oweS 0.100 143
hda 0.100 144