Top Promoters Bound by rutR

On this page you can access the list of promoter regions bound by rutR. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
tolB-pal-ybgF-lysT-valT-lysW-valZ,tolB-pal-ybgF-lysT,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY,tolB-pal-ybgF,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,tolB-pal-ybgF-lysT-valT 1.000 1
yhdJ 0.496 2
sokC 0.362 3
mokC-hokC 0.362 4
yjbJ 0.353 5
yaeR-tilS,yaeR 0.333 6
murJ 0.325 7
lacI-mhpR 0.312 8
ygfI-yggE-argO,argO 0.300 9
alaX-alaW 0.299 10
yfeC-yfeD 0.299 10
nc9 0.295 12
rpsG-rpsL-tusB-tusC-tusD-yheO,tusB-tusC-tusD-yheO 0.288 13
ydeP 0.284 14
ftsL-ftsI-murE-murF-mraY-murD-ftsW-murG-murC-ddlB-ftsQ-ftsA-ftsZ-lpxC 0.281 15
yceB-grxB,grxB 0.263 16
yecC3p 0.254 17
fimA-fimI-fimC,fimA,fimA-fimI-fimC-fimD-fimF-fimG-fimH 0.254 18
uvrC 0.254 19
ybcL-ybcM 0.253 20
sixA 0.250 21
insB-3-insA-3-insAB3 0.248 22
ibaG-mlaB-mlaC-mlaD-mlaE-mlaF,mlaB-mlaC-mlaD-mlaE-mlaF,mlaC-mlaD-mlaE-mlaF 0.246 23
phoU-pstB-pstA-pstC 0.240 24
cpdB 0.239 25
creA-creB-creC,creA-creB,creA-creB-creC-creD 0.230 26
rob 0.230 27
ssrS-fau,ssrS,ssrS-fau-sibC 0.218 28
ubiI-ubiH-pepP-ygfB,ubiH-pepP-ygfB 0.218 29
zapA-ssrS-fau,zapA 0.218 30
ydjN 0.217 31
yajI 0.213 32
nrdR-ribD-ribE-nusB-thiL,nrdR-ribD-ribE-nusB-thiL-pgpA 0.213 32
yafK-yafQ-dinJ,yafQ-dinJ 0.207 34
yafL 0.207 35
ftsA-ftsZ 0.207 36
yjgZ 0.204 37
rcsF-metQ-metI-metN,metQ-metI-metN 0.199 38
ydhI-ydhJ-ydhK,ydhI-ydhJ 0.198 39
yeaP-yoaJ-yoaK,yeaP 0.195 40
yhjK 0.193 41
tyrT-purU,purU 0.191 42
rssA,rssA-rssB,rssA-rssB-galU 0.191 43
yebV 0.190 44
yobD 0.181 45
azoR 0.176 46
yneG-glsB 0.175 47
yeaX 0.173 48
mukF-mukE 0.173 49
nc2 0.170 50
fabA 0.170 51
ryjA 0.167 52
ghxP-yjcE,ghxP 0.167 52
yhfK 0.161 54
yeaG-yeaH 0.159 55
fruR,fruR-mraZ-rsmH-ftsL 0.159 56
yrhA 0.159 57
yihL-yihM-yihN,yihL-yihM 0.157 58
emrY-emrK 0.156 60
evgL 0.156 60
evgA-evgS,evgA 0.156 60
pssL 0.156 62
pssA,pssA-yfiM 0.156 62
ilvE-ilvD,ilvE-ilvD-ilvA 0.154 64
prfC 0.153 65
ydbJ 0.153 66
uhpT 0.153 67
rutG-rutF-rutE-rutD-rutC-rutB-rutA 0.151 68
rutR 0.151 69
hda 0.150 70
bamB-yfgM,yfgM 0.148 71
ompN-pfo,pfo 0.148 72
aroH 0.148 73
otsA 0.148 74
yciO 0.147 75
yhjH 0.147 76
kdgK 0.147 76
ydeQ 0.146 78
atpD 0.146 79
yffM-yffN 0.145 80
iadA-yjiG-yjiH 0.144 81
kptA 0.144 81
yhcA-yhcD 0.142 83
rnlA,rnlA-rnlB 0.142 84
yfjM 0.142 85
poxB-hcr-hcp,hcr-hcp 0.142 86
ydhC 0.141 87
bamD 0.141 88
dapD-glnD,glnD 0.140 89
rtn 0.139 90
hybG-hybF-hybE-hybD 0.137 91
metB-metL 0.137 92
yiiX-metJ,metJ 0.137 93
ldtE 0.136 94
ydhB 0.136 95
alx 0.135 96
bluF 0.135 97
ycgZ-ymgA-ariR-ymgC,ycgZ 0.135 97
rseC-rseB-rseA,rseA 0.134 99
satP 0.134 100
mbiA 0.134 101
yhbW 0.134 102
hdhA,uidR-hdhA 0.134 103
ynbG 0.133 104
ydbA 0.133 104
ybjS 0.132 106
uxuR 0.129 107
lplA-ytjB 0.127 108
ykfI-yafW-ykfG-ykfH 0.127 109
trxB 0.126 110
yjaH 0.126 111
hupA,hupA-yjaH 0.126 112
intB 0.126 113
intR-ydaQ-ydaC-ralR-recT-recE 0.126 114
yahE 0.125 115
dadA-dadX 0.124 116
ycgB 0.124 117
arsR-arsB-arsC 0.124 118
yiaA 0.123 119
carA,carA-carB 0.123 120
yihN 0.123 121
actP-yjcH-acs,acs 0.122 122
ycfT 0.121 123
lolC-lolD-lolE,lolC-lolD-lolE-nagK 0.121 123
iscX-fdx-hscA-hscB 0.121 125
ybgE-cydX 0.120 126
pheV 0.120 127
kdpE 0.118 128
dmsA-dmsB-dmsC,dmsA-dmsB 0.117 129
wzxB-rfbC-rfbA 0.117 130
yjeI 0.117 131
ymgM 0.116 132
plaP-yoeI 0.114 133
plaP 0.114 134
nc6 0.113 135
ypfG 0.113 136
nupX 0.112 137
rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC,rplX-rplN-rpsQ-rpmC-rplP-rpsC 0.110 138
rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV 0.110 139
yeaC 0.110 140
yccX 0.108 141
hspQ-rlmI,rlmI 0.108 142
eutA-eutH 0.108 143
gnsB 0.107 144
bamB-yfgM-hisS,hisS 0.107 145
rmf 0.106 146
ldtB 0.105 147
ybiT 0.105 147
yhaB-yhaC 0.104 149
apaH-apaG-rsmA-pdxA-surA,surA,rsmA-pdxA-surA 0.103 150
purA-nsrR,purA 0.102 151
apaH-apaG-rsmA-pdxA,rsmA-pdxA 0.101 152