Top Promoters Bound by ttk

On this page you can access the list of promoter regions bound by ttk. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
gpmA 1.000 1
pyrG-mazG-mazF-mazE,mazG-mazF-mazE 0.949 2
yneG-glsB 0.864 3
acpS-pdxJ-recO-era-rnc,era-rnc,rnc 0.672 4
ybiC 0.646 5
bacA 0.630 6
ybhJ 0.624 7
cysG 0.609 8
yabP-yabQ 0.590 9
narG,narG-narH-narJ-narI 0.589 10
stpA 0.578 11
yfdK-yfdL-yfdM-yfdN-oweS 0.545 12
yqjD-yqjE-yqjK 0.539 13
yqjE-yqjK 0.539 13
csgB-csgA-csgC 0.532 15
csgA 0.532 15
glcA-glcB 0.523 17
ybgA-phr 0.512 18
lpd 0.510 19
ilvE-ilvD,ilvE-ilvD-ilvA 0.480 20
ykfJ-prfH 0.478 21
glcB-glcG 0.476 22
alx 0.467 23
yahE 0.464 24
fliL-fliM-fliN-fliO-fliP-fliQ-fliR 0.463 25
yfbK 0.458 26
yfbL 0.458 26
hscA,iscX-fdx-hscA 0.447 28
gtrA-gtrB-gtrS 0.443 29
ileV-alaV,ileV 0.442 32
rrlH-rrfH 0.442 32
rrfD-rrlD 0.442 32
ileU 0.442 32
ileT-alaT 0.442 32
rrlA-rrfA,rrlA 0.442 32
tufA 0.440 36
ynfK 0.436 37
kdgR 0.426 38
yebQ 0.426 38
yciN 0.424 40
topA 0.424 40
yajO 0.421 42
cysI 0.419 43
ykgP 0.419 44
eaeH-insE-1-insF-1-insEF1 0.419 44
agrB 0.419 46
arsR-arsB-arsC 0.419 46
sibC 0.410 48
tyrB 0.402 49
ymcE-gnsA 0.399 50
gnsA 0.399 50
rnk 0.392 52
yehK 0.392 53
yafC 0.382 54
yafD,yafD-yafE 0.382 54
lpp 0.379 56
xylB-xylA 0.372 57
xylF-xylG-xylH-xylR 0.372 57
dtd-yiiD 0.369 59
ligA-zipA-ypeB,ligA-zipA,zipA 0.364 60
cysZ,cysZ-cysK 0.364 60
torI 0.361 62
dsbG 0.356 63
ahpC,ahpC-ahpF 0.356 63
yjgR 0.353 65
ibpB 0.346 66
yjeV 0.346 67
agaR 0.338 68
kbaZ-agaV-agaW-agaA 0.338 68
yihL-yihM-yihN,yihL-yihM 0.333 70
murI,murI-rrsB-gltT 0.329 71
proC 0.324 72
aroL-yaiA-aroM,aroL-yaiA 0.324 72
tig-clpP-clpX,tig 0.317 74
sroH 0.314 75
malT 0.312 76
ansP 0.311 77
yncG 0.311 77
rpoE,rseC-rseB-rseA-rpoE,rseA-rpoE 0.311 80
rseC-rseB-rseA-rpoE-rseD 0.311 80
nadB 0.311 80
atpA-atpH-atpF-atpE-atpB,atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB,atpH-atpF-atpE-atpB 0.309 82
atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI 0.309 82
alaX-alaW 0.306 84
yfeC-yfeD 0.306 84
yfeA 0.305 86
sfmH-sfmF 0.305 87
cobC-nadD-holA-lptE-leuS,holA-lptE-leuS,lptE-leuS 0.298 88
ybeL 0.298 88
trxA-rhoL-rho,trxA-rhoL-rho-wecA,trxA 0.297 90
tufA-fusA 0.297 91
rplA-rplJ-rplL 0.297 92
yegP 0.290 93
yegQ,yegQ-cyaR 0.290 93
pspE 0.288 95
yceI-yceJ 0.287 96
parE 0.284 97
fepC-fepG-fepD,fepG-fepD 0.284 98
entS 0.284 98
yhcO 0.283 100
caiE-caiD-caiC-caiB-caiA-caiT 0.283 101
fixA-fixB-fixC,fixA-fixB-fixC-fixX 0.283 101
gcvP 0.280 103
yddG 0.280 104
fdnG-fdnH-fdnI,fdnG 0.280 104
ompG 0.278 106
nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC,nnr-tsaE-amiB 0.277 107
yicH 0.277 108
ycdZ 0.273 109
yjgX 0.273 110
yjgZ 0.273 110
tpr-tyrV-tyrT-purU-ychJ-rttR,tyrV-tyrT-purU-ychJ,ychJ 0.272 112
rssA,rssA-rssB,rssA-rssB-galU 0.272 112
pptA 0.271 114
yjjW 0.269 115
sraA 0.266 116
ychQ-ychA-kdsA 0.261 117
yafU 0.259 118
yafF 0.259 118
lgoD 0.258 120
ydjX-ydjY-ydjZ-ynjA-ynjB-ynjC-ynjD,ydjX-ydjY-ydjZ-ynjA 0.257 121
lysS-prfB 0.257 122
yfdP-yfdQ 0.256 123
yggI 0.255 124
leuV-leuP-leuQ 0.255 125
gltX 0.255 126
valU-valX-valY-lysV 0.255 126
ychN 0.254 128
ychO 0.254 128
yeiR-lpxT 0.254 130
ydiE 0.254 131
dinQ 0.253 132
yghD-yghE 0.250 133
ygdH,ygdH-sdaC 0.249 134
ygjH 0.249 135
ebgR 0.249 135
aer 0.247 137
yohH 0.244 138
yohP 0.244 138
yfjL,yfjK-yfjL 0.242 140
cyaR 0.242 141
napC-napB-napH-napG-napA-napD-napF,ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA-napC-napB-napH-napG-napA-napD-napF,napA-napD-napF 0.242 143
yojO 0.242 143
eco 0.242 143
insL-1 0.241 145
hisS-ispG-yfgA,yfgA 0.240 146
ynjF 0.235 147
nudG-gdhA,nudG 0.235 147
parE-yqiA-cpdA 0.235 149
spy3p 0.234 150
cho 0.234 150
entD-fepA,fepA 0.231 152
fes-entF-fepE-ybdZ,fes-ybdZ 0.231 152
aroH 0.229 154
puuC-puuB-puuE 0.228 155
rmuC-ubiE-ubiJ-esrE,rmuC 0.228 156
ubiX 0.228 157
ydcI 0.226 158
ydcJ 0.226 158
trkA 0.226 160
yedY-yedZ 0.225 161
valZ-lysY 0.224 162
lysZ 0.224 162
opgC 0.222 164
opgG-opgH 0.222 164
yfeH 0.219 166
lysP-yeiE,yeiE 0.218 167
yeiH 0.218 167
ygdR 0.217 169
tas 0.217 169
trpR 0.215 171
hyfA-hyfB-hyfC-hyfD-hyfE-hyfF-hyfG-hyfH-hyfI-hyfJ-hyfR-focB 0.214 172
ybdD 0.210 173
yaeF-proS,proS 0.209 174
yegK-yegL 0.208 176
ibsA 0.208 176
sibB 0.208 176
mdtA,mdtA-mdtB-mdtC-iceT-baeS-baeR 0.208 176
racR 0.207 179
ydaS-ydaT-ydaU-ydaV-ydaW-rzpR 0.207 179
ribB 0.207 181
yqiC,yqiC-ygiL 0.207 181
agrA 0.205 183
lpxM 0.204 184
pcm-umpG,nlpD-pcm-umpG 0.203 185
yhjJ 0.203 186
yibV 0.201 187
rsmG 0.200 188