Top Promoters Bound by ttk

On this page you can access the list of promoter regions bound by ttk. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
gpmA 1.000 1
pyrG-mazG-mazF-mazE,mazG-mazF-mazE 0.949 2
yneG-glsB 0.864 3
acpS-pdxJ-recO-era-rnc,era-rnc,rnc 0.672 4
ybiC 0.646 5
bacA 0.630 6
ybhJ 0.624 7
cysG 0.609 8
yabP-yabQ 0.590 9
narG,narG-narH-narJ-narI 0.589 10
stpA 0.578 11
yfdK-yfdL-yfdM-yfdN-oweS 0.545 12
yqjD-yqjE-yqjK 0.539 13
yqjE-yqjK 0.539 14
csgA 0.532 15
csgB-csgA-csgC 0.532 16
glcA-glcB 0.523 17
ybgA-phr 0.512 18
lpd 0.510 19
ilvE-ilvD,ilvE-ilvD-ilvA 0.480 20
ykfJ-prfH 0.478 21
glcB-glcG 0.476 22
alx 0.467 23
yahE 0.464 24
fliL-fliM-fliN-fliO-fliP-fliQ-fliR 0.463 25
yfbL 0.458 26
yfbK 0.458 27
hscA,iscX-fdx-hscA 0.447 28
gtrA-gtrB-gtrS 0.443 29
ileV-alaV,ileV 0.442 31
rrfD-rrlD 0.442 31
ileT-alaT 0.442 31
rrlH-rrfH 0.442 33
rrlA-rrfA,rrlA 0.442 33
ileU 0.442 35
tufA 0.440 36
ynfK 0.436 37
kdgR 0.426 38
yebQ 0.426 38
yciN 0.424 40
topA 0.424 41
yajO 0.421 42
cysI 0.419 43
eaeH-insE-1-insF-1-insEF1 0.419 44
ykgP 0.419 45
arsR-arsB-arsC 0.419 46
agrB 0.419 47
sibC 0.410 48
tyrB 0.402 49
gnsA 0.399 50
ymcE-gnsA 0.399 51
rnk 0.392 52
yehK 0.392 53
yafC 0.382 54
yafD,yafD-yafE 0.382 54
lpp 0.379 56
xylF-xylG-xylH-xylR 0.372 57
xylB-xylA 0.372 58
dtd-yiiD 0.369 59
cysZ,cysZ-cysK 0.364 60
ligA-zipA-ypeB,ligA-zipA,zipA 0.364 61
torI 0.361 62
dsbG 0.356 63
ahpC,ahpC-ahpF 0.356 64
yjgR 0.353 65
ibpB 0.346 66
yjeV 0.346 67
agaR 0.338 68
kbaZ-agaV-agaW-agaA 0.338 68
yihL-yihM-yihN,yihL-yihM 0.333 70
murI,murI-rrsB-gltT 0.329 71
aroL-yaiA-aroM,aroL-yaiA 0.324 72
proC 0.324 73
tig-clpP-clpX,tig 0.317 74
sroH 0.314 75
malT 0.312 76
ansP 0.311 77
yncG 0.311 77
rpoE,rseC-rseB-rseA-rpoE,rseA-rpoE 0.311 79
nadB 0.311 79
rseC-rseB-rseA-rpoE-rseD 0.311 81
atpA-atpH-atpF-atpE-atpB,atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB,atpH-atpF-atpE-atpB 0.309 82
atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI 0.309 83
alaX-alaW 0.306 84
yfeC-yfeD 0.306 84
yfeA 0.305 86
sfmH-sfmF 0.305 87
cobC-nadD-holA-lptE-leuS,holA-lptE-leuS,lptE-leuS 0.298 88
ybeL 0.298 89
trxA-rhoL-rho,trxA-rhoL-rho-wecA,trxA 0.297 90
tufA-fusA 0.297 91
rplA-rplJ-rplL 0.297 92
yegQ,yegQ-cyaR 0.290 93
yegP 0.290 94
pspE 0.288 95
yceI-yceJ 0.287 96
parE 0.284 97
entS 0.284 98
fepC-fepG-fepD,fepG-fepD 0.284 99
yhcO 0.283 100
caiE-caiD-caiC-caiB-caiA-caiT 0.283 101
fixA-fixB-fixC,fixA-fixB-fixC-fixX 0.283 102
gcvP 0.280 103
yddG 0.280 104
fdnG-fdnH-fdnI,fdnG 0.280 104
ompG 0.278 106
nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC,nnr-tsaE-amiB 0.277 107
yicH 0.277 108
ycdZ 0.273 109
yjgZ 0.273 110
yjgX 0.273 111
tpr-tyrV-tyrT-purU-ychJ-rttR,tyrV-tyrT-purU-ychJ,ychJ 0.272 112
rssA,rssA-rssB,rssA-rssB-galU 0.272 113
pptA 0.271 114
yjjW 0.269 115
sraA 0.266 116
ychQ-ychA-kdsA 0.261 117
yafU 0.259 118
yafF 0.259 119
lgoD 0.258 120
ydjX-ydjY-ydjZ-ynjA-ynjB-ynjC-ynjD,ydjX-ydjY-ydjZ-ynjA 0.257 121
lysS-prfB 0.257 122
yfdP-yfdQ 0.256 123
yggI 0.255 124
leuV-leuP-leuQ 0.255 125
gltX 0.255 126
valU-valX-valY-lysV 0.255 127
ychO 0.254 128
ychN 0.254 129
yeiR-lpxT 0.254 130
ydiE 0.254 131
dinQ 0.253 132
yghD-yghE 0.250 133
ygdH,ygdH-sdaC 0.249 134
ygjH 0.249 135
ebgR 0.249 135
aer 0.247 137
yohH 0.244 138
yohP 0.244 139
yfjL,yfjK-yfjL 0.242 140
cyaR 0.242 141
napC-napB-napH-napG-napA-napD-napF,ccmH-dsbE-ccmF-ccmE-ccmD-ccmC-ccmB-ccmA-napC-napB-napH-napG-napA-napD-napF,napA-napD-napF 0.242 142
eco 0.242 143
yojO 0.242 144
insL-1 0.241 145
hisS-ispG-yfgA,yfgA 0.240 146
nudG-gdhA,nudG 0.235 147
ynjF 0.235 148
parE-yqiA-cpdA 0.235 149
spy3p 0.234 150
cho 0.234 150
entD-fepA,fepA 0.231 152
fes-entF-fepE-ybdZ,fes-ybdZ 0.231 152
aroH 0.229 154
puuC-puuB-puuE 0.228 155
rmuC-ubiE-ubiJ-esrE,rmuC 0.228 156
ubiX 0.228 157
ydcI 0.226 158
ydcJ 0.226 159
trkA 0.226 160
yedY-yedZ 0.225 161
lysZ 0.224 162
valZ-lysY 0.224 163
opgG-opgH 0.222 164
opgC 0.222 165
yfeH 0.219 166
yeiH 0.218 167
lysP-yeiE,yeiE 0.218 168
tas 0.217 169
ygdR 0.217 170
trpR 0.215 171
hyfA-hyfB-hyfC-hyfD-hyfE-hyfF-hyfG-hyfH-hyfI-hyfJ-hyfR-focB 0.214 172
ybdD 0.210 173
yaeF-proS,proS 0.209 174
mdtA,mdtA-mdtB-mdtC-iceT-baeS-baeR 0.208 175
ibsA 0.208 176
sibB 0.208 176
yegK-yegL 0.208 178
racR 0.207 179
ydaS-ydaT-ydaU-ydaV-ydaW-rzpR 0.207 180
ribB 0.207 181
yqiC,yqiC-ygiL 0.207 181
agrA 0.205 183
lpxM 0.204 184
pcm-umpG,nlpD-pcm-umpG 0.203 185
yhjJ 0.203 186
yibV 0.201 187
rsmG 0.200 188
sanA-yeiS 0.200 189
yqjG 0.198 190
recF-dnaN 0.197 191
yehE-mrp,mrp 0.196 192
metG 0.196 192
ygdG 0.196 194
ydgA 0.194 195
xapB-xapA 0.193 196
tufB,tufB-secE 0.192 197
glyT-thrT-tufB-secE-nusG,glyT-thrT-tufB 0.192 198
elyC 0.191 199
smtA-mukF-mukE-mukB,smtA-mukF-mukE 0.191 199
yqfH 0.191 201
radA-nadR 0.190 202
panM 0.190 203
ybgE-cydX 0.189 204
puuR-puuC 0.189 205
galU 0.188 206
creA-creB-creC,creA-creB,creA-creB-creC-creD 0.188 207
rob 0.188 208
yijF 0.188 209
ygjV-uxaA-uxaC,uxaA-uxaC 0.188 210
umpH-nagC,nagC 0.187 211
dapD,yaeI-dapD,yaeH-yaeI-dapD 0.187 212
holC 0.186 213
valS 0.186 214
ygiB-ygiC 0.185 215
yiaB 0.185 216
ylbI 0.185 217
yejA-yejB-yejE-yejF 0.184 218
yhjX 0.184 219
citB 0.183 220
apaH-apaG 0.183 221
folA 0.183 222
typA 0.183 223
glnG-glnL-glnA-yshB,glnG-glnL-glnA,glnL-glnA,glnA 0.183 224
yajO-dxs-ispA-xseB,dxs-ispA-xseB 0.183 225
thiI 0.183 226
sdiA-yecC-yecS-dcyD,yecC-yecS-dcyD 0.182 227
wecF 0.181 228
ygeI 0.181 229
dusA-pspG,dusA 0.179 230
dauA 0.178 231
purM-purN 0.178 232
hda-uraA-upp,uraA-upp,upp 0.178 233
speB-speA-yqgB,yqgB 0.178 234
speB-speA 0.178 235
yqgC 0.178 235
ykfN 0.178 237
purF-cvpA-dedD,cvpA-dedD,dedD 0.177 238
essD-rrrD-rzpD 0.174 239
hslR-hslO 0.173 240
kilR-ydaE 0.172 241
sieB 0.172 241
opgD-ydcH-rimL,opgD,opgD-ydcH 0.171 243
pppA 0.170 244
ibsB 0.170 245
yghQ 0.170 246
patA 0.170 247
yhdT-panF-prmA-dusB,yhdT-panF-prmA 0.169 248
elaD 0.168 249
ychS 0.168 250
yahA 0.168 251
rhaD 0.167 252
insF-4-insE-4-insEF4 0.167 253
ymdE-ycdU 0.167 254
mug 0.166 255
ileX 0.166 255
fucP-fucI-fucK-fucU-fucR 0.166 257
fucO-fucA 0.166 258
ybjC-nfsA-rimK-ybjN 0.165 259
grxA 0.165 260
ygeQ 0.164 261
glyU 0.164 261
yfdY 0.164 263
lpxP 0.164 263
yhiS 0.162 265
pyrD 0.162 266
yfgJ 0.162 267
nlpC-btuD-btuE,btuE 0.162 268
mreD-mreC-mreB,yhdE-mreD-mreC-mreB,mreB 0.162 269
ypfH 0.162 270
eamB 0.161 271
yfiE 0.161 272
ratB-ratA 0.160 273
yhhH 0.159 274
ygfZ 0.158 275
cptA-sdhE 0.158 276
nadC 0.158 277
mutM-rpmG-rpmB,rpmG-rpmB 0.158 278
ydeR-ydeS-ydeT 0.157 279
ynfE-ynfF-ynfG-ynfH-dmsD 0.157 280
ycgB 0.157 281
dadA-dadX 0.157 281
rzoD 0.157 283
yjhP 0.156 284
rlmH-rsfS-cobC-nadD,nadD 0.156 285
mgtA-mgtL 0.154 286
mutM 0.154 287
yrdB-aroE-tsaC-yrdD 0.154 288
murA-ibaG,ibaG 0.153 289
mdtI-mdtJ 0.152 290
hupB,hupB-ppiD 0.152 291
yceM 0.151 292
yfiP,yfiP-pka 0.151 293
yfiF 0.151 294
trxC 0.151 294
naRNA6 0.150 296
yehW-yehX-yehY-osmF,yehX-yehY-osmF 0.150 297
yhjA 0.150 298
treF 0.150 299
creD 0.149 300
rluA-rapA,rapA 0.149 301
sokC 0.149 302
yigM 0.148 303
agp 0.148 304
sibE 0.147 305
sibD 0.147 306
ibsE 0.147 306
ridA 0.146 308
ygbN 0.146 309
sppA,sppA-ansA 0.146 310
topB-selD 0.146 311
rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC,rplX-rplN-rpsQ-rpmC-rplP-rpsC 0.145 312
metF 0.145 313
lnt-ybeX,ybeX 0.145 314
rtn 0.145 315
ibsD 0.145 316
serX 0.145 317
ydhP 0.144 318
groL 0.144 319
yjeH 0.144 320
groS-groL,groS-groL-yjeI 0.144 321
mntH 0.143 322
nupC,nupC-insL-3 0.143 323
istR 0.143 324
tisB 0.143 324
emrD 0.143 326
ysdE 0.143 327
ybaO-mdlA,ybaO 0.143 328
uxaB 0.141 329
ldrC 0.141 330
cstA,cstA-ybdD 0.141 331
rhaM 0.141 332
ygiS-ygiT-mqsR,ygiT-mqsR 0.140 333
ygiT 0.140 334
trmA 0.140 335
btuB,btuB-murI 0.140 336
bcr-rsuA,rsuA 0.140 337
yejH 0.140 338
gltF 0.139 339
mokC-hokC 0.139 340
metB-metL 0.139 341
yiiX-metJ,metJ 0.139 342
yiiX 0.139 343
ybdH 0.139 344
yafN-yafO-yafP 0.138 345
cedA 0.137 346
lpxD 0.137 347
yafZ-ykfA,ykfA 0.137 348
apt,apt-dnaX-ybaB 0.137 349
ssrA 0.137 350
rpsQ-rpmC-rplP-rpsC-rplV-rpsS 0.136 351
rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV,rplE-rplX-rplN-rpsQ-rpmC-rplP-rpsC-rplV 0.136 352
hha-tomB 0.136 353
yaeH 0.136 354
yqeF 0.135 355
yqeG 0.135 355
flk 0.135 357
dedA-truA-usg-pdxB,truA-usg-pdxB,pdxB 0.135 358
yhcG 0.135 359
yjjY 0.134 360
yidZ 0.134 361
mngR 0.133 362
ygfM-xdhD 0.132 363
accA 0.132 364
cadA 0.131 365
yjfK-yjfL-yjfM-yjfC 0.130 366
yfeK-yfeS 0.130 367
ygcS 0.129 368
yfjM 0.129 369
rnlA,rnlA-rnlB 0.129 370
ydiK 0.129 371
ydiH-menI-ydiJ,menI-ydiJ 0.129 372
oppA-oppB-oppC-oppD-oppF,oppA-oppB,oppA-oppB-oppC 0.129 373
ysgD 0.128 374
yigE 0.128 375
corA 0.128 375
yjhQ-yjhX,yjhP-yjhQ-yjhX 0.128 377
gstA 0.128 378
apaH-apaG-rsmA-pdxA,rsmA-pdxA 0.128 379
yeeJ 0.126 380
alaE 0.126 381
naRNA4 0.126 383
naRNA3 0.126 383
naRNA2 0.126 383
naRNA1 0.126 383
naRNA5 0.126 386
ybfD 0.126 387
yedV-yedW,yedW 0.125 388
yiaG 0.125 389
yiaF 0.125 390
ycjZ 0.125 391
fumA,fumC-fumA 0.125 392
manA,manA-ydgA 0.125 392
yijD 0.125 394
cbrA 0.125 395
clpA 0.125 396
treR 0.123 397
clpP-clpX 0.123 398
insI-3 0.123 399
treC-treB,treB 0.123 400
hupA,hupA-yjaH 0.123 401
yjaH 0.123 402
acrZ 0.123 403
insH-2-nmpC,insH-2 0.122 404
yghF 0.122 405
pspH 0.122 406
lysU 0.122 407
purT 0.122 408
yebF 0.122 409
rarD-yigI,yigF-yigG-rarD-yigI,yigI 0.121 410
pldA,pldA-recQ 0.121 411
cirA 0.120 412
alpA 0.120 413
cfa 0.120 414
ygbF-ygbT-casE-casD 0.119 415
yncC 0.119 416
wecA-wzzE-wecB-wecC-rffG-rffH-wecD-wecE-wzxE-wzyE-wecG-wecF,wecA-wzzE,wecA-wzzE-wecB 0.119 417
sspB-sspA 0.118 418
folB,bacA-folB 0.118 419
lysP 0.118 420
yodE 0.118 421
wzc-wzb 0.117 422
rplT-rpmI 0.117 423
pheM-rplT,rplT 0.117 424
fdhF 0.117 425
eutP-eutS-maeB,maeB 0.117 426
talA-tktB,talA 0.117 426
nhaA-nhaR,nhaA 0.117 428
mgtA5p 0.116 429
ppc 0.116 430
ulaD-ulaE 0.115 431
pyrE-rph,rph 0.114 432
yicC 0.114 433
hybB-hybA-hybO-yghW,yghW 0.114 434
nlpA 0.113 435
yicS 0.113 436
modB-modC 0.113 437
bamE 0.113 438
yceB-grxB,grxB 0.112 439
ycgG 0.112 440
panC 0.112 441
ahpF 0.112 442
fadM 0.111 443
frwD 0.111 444
thrB-thrC,thrB 0.111 445
trpS-gph-rpe-dam-damX 0.111 446
gss 0.111 447
yghU 0.111 447
ymfJ 0.111 449
dicA 0.110 450
lspA-fkpB-ispH 0.110 451
atoS-atoC 0.109 452
ftsQ-ftsA,ftsQ-ftsA-ftsZ,ftsQ 0.109 453
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN 0.109 454
glpK 0.108 455
yeiW 0.108 456
yeiP,yeiP-yeiQ 0.108 457
proK 0.108 458
ypjI 0.108 459
ybgC-tolQ-tolR-tolA,ybgC-tolQ-tolR-tolA-tolB 0.108 460
mdtG 0.107 461
yjjU-yjjV 0.107 462
ytjA 0.107 463
ybhA 0.107 464
pgl 0.107 465
yciE-yciF-yciG,yciG 0.107 466
dtpC 0.107 467
uidR 0.106 468
yggE 0.106 469
yhdJ 0.106 470
ypjC 0.106 471
bfr-bfd 0.106 472
pspB-pspC-pspD-pspE,pspB-pspC-pspD 0.105 473
gnd 0.105 474
gndA 0.105 475
yidA 0.104 476
tabA 0.104 477
bdcA 0.104 478
tatD 0.104 479
yahB 0.104 480
hofP-hofO-hofN-hofM 0.103 481
murA 0.103 482
ypjB 0.103 483
sdsN 0.102 484
sdiA 0.102 485
ydhC 0.102 486
greB-yhgF,greB 0.102 487
cusS-cusR 0.101 488
ydjO 0.101 489
dinB-yafN,dinB-yafN-yafO-yafP 0.101 490
ybjQ-amiD 0.101 491
yfaD-ypaA 0.100 492
sibA 0.100 493