Top Promoters Bound by yafN

On this page you can access the list of promoter regions bound by yafN. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
yafN-yafO-yafP 1.000 1
eutA-eutH 0.635 2
purN,purN-ppk 0.629 3
frr-dxr,frr-dxr-ispU-cdsA,frr-dxr-ispU,frr 0.612 4
metZ-metW-metV 0.595 5
mltA 0.595 6
ypdB-ypdC 0.495 7
msyB 0.420 8
ydaM 0.376 9
ydaN-fnrS,ydaN 0.376 9
ygaC 0.362 11
ygaM 0.362 11
menE-menC-menB 0.359 13
sfmC-sfmD 0.340 14
relA,mazE-relA,mazG-mazF-mazE-relA,mazF-mazE-relA 0.332 15
rspB-rspA 0.321 16
ligB 0.320 17
gmk-rpoZ-spoT-trmH,gmk 0.320 18
ygbF 0.308 19
folK-pcnB 0.303 20
ybeR-djlB 0.295 21
ybeQ 0.295 22
ygiQ 0.293 23
yhcE 0.288 24
yagL-yagM 0.287 25
ettA 0.287 26
slt,slt-trpR 0.287 26
ykgV 0.285 28
yicS 0.281 29
nlpA 0.281 30
nsrR-rnr-rlmB-yjfI,nsrR-rnr-rlmB,nsrR-rnr 0.273 31
mnmC 0.271 32
yfcJ-fabB,fabB 0.271 33
insH-6 0.264 34
ymgF 0.260 35
pflA 0.251 36
ycgE 0.249 37
recJ-dsbC,prfB-recJ-dsbC,dsbC 0.246 38
yhfR 0.240 39
insG 0.234 40
aidB 0.234 41
pheM-rplT,rplT 0.233 42
ihfA-pheT-pheS-pheM,pheM 0.233 43
yhcC5p 0.233 44
ymgM 0.233 45
tyrT-purU,purU 0.232 46
citG-citX-citF-citE-citD-citC 0.226 47
citA-citB 0.226 48
yhiD 0.223 49
yfdR-yfdS-yfdT 0.223 50
ybjL-rybB,ybjL 0.220 51
ybjM 0.220 51
yncO 0.220 53
yncI 0.220 53
sufD-sufC-sufB-sufA,sufE-sufS-sufD-sufC-sufB-sufA 0.214 55
sdhD-sdhA-sdhB 0.213 56
rpsP5p 0.212 57
hns 0.206 58
hisP-hisM-hisQ-hisJ 0.204 59
tolB-pal-ybgF-lysT-valT-lysW-valZ,tolB-pal-ybgF-lysT,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY,tolB-pal-ybgF,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,tolB-pal-ybgF-lysT-valT 0.203 60
ybdM 0.202 61
yehR 0.200 62
hokA 0.199 63
insJ 0.199 64
insJK 0.199 64
ygaQ 0.199 66
mrcA 0.198 67
hofP-hofO-hofN-hofM 0.198 68
actP 0.197 69
adeD 0.195 70
adeQ 0.195 71
glyV-glyX-glyY 0.190 72
yeeX 0.188 73
rsmG-mnmG-mioC,mioC 0.187 74
asnA 0.187 75
yfjD 0.184 76
lon-hupB,lon 0.184 77
sraA 0.184 78
pagP 0.183 79
mdh 0.182 80
argR 0.182 80
yqcG 0.181 82
rpoS 0.180 83
ydjN 0.178 84
yicI-yicJ 0.177 85
selC 0.177 86
yajO-dxs-ispA-xseB,dxs-ispA-xseB 0.176 87
thiI 0.176 87
dauA-prsA,prsA 0.174 89
yiaU 0.174 90
yiaT 0.174 91
acpS-pdxJ 0.172 92
pinR 0.172 93
pinQ 0.172 94
cydA-cydB-ybgE-cydX,cydA-cydB,cydA-cydB-ybgE-ybgC-cydX,cydA,cydA-cydB-cydX 0.169 95
proY 0.169 96
prc-proQ 0.169 97
yebS-yebT 0.169 98
prc-proQ-msrC,msrC 0.165 99
quuD 0.164 100
yrdB-aroE-tsaC-yrdD 0.164 101
carB 0.163 102
cysI 0.162 103
ylbI 0.160 104
ebgR 0.159 105
ygjH 0.159 106
shoB 0.159 107
ohsC 0.159 107
recA,recX-recA 0.159 109
ydcH 0.158 110
rimL 0.158 111
epmA-yjeM-yjeN,epmA-yjeM,epmA 0.157 112
frdD-frdC-frdB-frdA,frdB-frdA 0.157 113
gadX,gadW-gadX 0.157 114
lit 0.156 115
ymfD-ymfE 0.156 116
aroL-yaiA-aroM,aroL-yaiA 0.155 117
proC 0.155 118
ybhI 0.154 119
rcsB 0.153 120
rpoS-nlpD 0.152 121
yqeL 0.151 122
mltD 0.151 123
G0-10706 0.150 124
ytfL 0.150 125
rpsF-priB-rpsR-rplI 0.147 126
ycbX 0.146 127
rlmL,rlmL-uup 0.146 127
pitA 0.144 129
yhiN 0.144 130
nc1 0.144 131
intF 0.144 132
pgk,fbaA-pgk,mscS-fbaA-pgk 0.143 133
ycgY 0.141 134
cydC-cydD 0.140 135
emrE 0.140 136
ylcJ 0.140 137
ygcG 0.139 138
queE 0.139 139
fre 0.138 140
ydfH 0.138 141
rplX-rplN-rpsQ-rpmC 0.137 142
rplF-rpsH-rpsN-rplE-rplX-rplN-rpsQ-rpmC-rplP 0.137 143
yaiP 0.136 144
ykiC 0.136 145
caiE-caiD-caiC-caiB-caiA-caiT 0.136 146
fixA-fixB-fixC,fixA-fixB-fixC-fixX 0.136 147
cueR 0.135 148
yibT 0.134 149
yibL 0.134 149
etk-etp-gfcE 0.134 151
malZ 0.133 152
umpH 0.132 153
yjiK 0.132 154
yeaY 0.132 155
ymgK 0.132 156
iraM 0.132 157
ldtA 0.130 158
rsmD-yhhL,rsmD-yhhL-yhhN 0.128 159
yfaD-ypaA 0.128 160
ykgJ 0.128 161
dicB-ydfD-ydfE-insD-7-intQ 0.127 162
bamA,bamA-skp,bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE 0.126 163
yidE 0.126 164
plsX-fabH-fabD-fabG 0.126 165
rpmF-plsX-fabH,rpmF-plsX,rpmF-plsX-fabH-fabD-fabG 0.126 166
ldtD-ycbK-ycbL,ldtD 0.125 167
cyoD-cyoC-cyoB,cyoB,cyoC-cyoB,cyoE-cyoD-cyoC-cyoB 0.125 168
rnb-yciW,yciW 0.125 169
yedV-yedW,yedW 0.125 170
yedY-yedZ 0.125 171
kch 0.124 172
lldP-lldR-lldD 0.124 173
isrC,flu-isrC 0.124 174
flu 0.124 174
quuQ-ydfU 0.123 176
alaE 0.123 177
puuD-puuR,puuD-puuR-puuC-puuB-puuE 0.123 178
puuP-puuA,puuP-puuA-ymjE,puuA 0.123 179
nrdG 0.122 180
fliC 0.122 181
fliD-fliS-fliT 0.122 181
yedQ-yodC-yedI,yedI 0.122 183
yahO 0.121 184
yahN 0.121 185
yceK 0.121 186
folX-yfcH 0.121 187
yfcF 0.121 188
btuR-yciK 0.121 189
sohB 0.121 189
add 0.120 191
yoeA 0.120 192
ybfH 0.119 193
ompT 0.119 194
truC-yqcC-csrB 0.118 195
yqcA-truC-yqcC 0.118 196
recN-bamE,recN 0.118 197
yafC 0.118 198
yafD,yafD-yafE 0.118 198
luxS-gshA,gshA 0.116 200
yijO 0.116 201
ycgG 0.116 202
qseB-qseC 0.115 203
ygiV-ygiW,ygiW 0.115 204
uhpC-uhpB-uhpA-ilvN-ilvB-ivbL,uhpA-ilvN-ilvB-ivbL,ivbL,ilvN-ilvB-ivbL 0.115 205
istR 0.115 206
tisB 0.115 206
asr 0.115 208
yhiD-hdeB-hdeA,hdeB-hdeA 0.114 209
hdeD 0.114 210
ycaO,focA-ycaO 0.113 211
hybB-hybA-hybO-yghW,yghW 0.113 212
malQ-malP,malP 0.113 213
ygbN 0.113 214
rlmH-rsfS-cobC-nadD,nadD 0.112 215
fur 0.112 216
btuD 0.111 217
parE 0.111 218
speD 0.111 219
yeeX-yeeA,yeeA 0.111 220
ypfJ-purC-bamC-dapA,bamC-dapA 0.111 221
gcvR-bcp,gcvR 0.111 222
aroB 0.110 223
rnb 0.110 224
bcsE-bcsF,bcsE-bcsF-bcsG 0.109 225
recJ-dsbC-xerD,xerD,dsbC-xerD 0.109 226
fldB 0.109 227
nudJ-rluE 0.109 228
icd 0.109 229
xdhA-xdhB-xdhC,xdhA-xdhB 0.107 230
yrhA 0.107 231
pnuC 0.107 232
bcsQ-yhjR,yhjR 0.106 233
folC-accD-dedA,accD-dedA 0.106 234
yffS 0.105 235
purT 0.105 236
kbaZ-agaV-agaW-agaA 0.105 237
agaR 0.105 238
ykgL 0.104 239
yhfY-yhfZ,yhfZ 0.104 240
cspF 0.104 241
cspB 0.104 242
ydcN,ydcN-ydcP 0.103 243
yhhM 0.103 244
yhhN,yhhN-zntA 0.103 244
umuD-umuC 0.102 246
hlyE 0.102 247
ubiX-purF-cvpA,purF-cvpA 0.102 248
frvR-frvX-frvB-frvA 0.101 249
orn-glyV-glyX-glyY,orn 0.101 250
psd-rsgA,rsgA 0.101 251
hldD-waaF-waaC,hldD-waaF-waaC-waaL 0.101 252
tdh-kbl-yibB,yibB 0.101 253
insH-10 0.100 254
yhcF 0.100 254
yjaB 0.100 256
metA 0.100 257
sibE 0.100 258
aaaD 0.100 259
nohD 0.100 260