Top Promoters Bound by yafN

On this page you can access the list of promoter regions bound by yafN. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
yafN-yafO-yafP 1.000 1
eutA-eutH 0.635 2
purN,purN-ppk 0.629 3
frr-dxr,frr-dxr-ispU-cdsA,frr-dxr-ispU,frr 0.612 4
mltA 0.595 5
metZ-metW-metV 0.595 5
ypdB-ypdC 0.495 7
msyB 0.420 8
ydaM 0.376 9
ydaN-fnrS,ydaN 0.376 9
ygaC 0.362 11
ygaM 0.362 11
menE-menC-menB 0.359 13
sfmC-sfmD 0.340 14
relA,mazE-relA,mazG-mazF-mazE-relA,mazF-mazE-relA 0.332 15
rspB-rspA 0.321 16
ligB 0.320 17
gmk-rpoZ-spoT-trmH,gmk 0.320 17
ygbF 0.308 19
folK-pcnB 0.303 20
ybeQ 0.295 21
ybeR-djlB 0.295 21
ygiQ 0.293 23
yhcE 0.288 24
yagL-yagM 0.287 25
ettA 0.287 26
slt,slt-trpR 0.287 26
ykgV 0.285 28
nlpA 0.281 29
yicS 0.281 29
nsrR-rnr-rlmB-yjfI,nsrR-rnr-rlmB,nsrR-rnr 0.273 31
yfcJ-fabB,fabB 0.271 32
mnmC 0.271 32
insH-6 0.264 34
ymgF 0.260 35
pflA 0.251 36
ycgE 0.249 37
recJ-dsbC,prfB-recJ-dsbC,dsbC 0.246 38
yhfR 0.240 39
insG 0.234 40
aidB 0.234 41
ihfA-pheT-pheS-pheM,pheM 0.233 42
pheM-rplT,rplT 0.233 42
yhcC5p 0.233 44
ymgM 0.233 45
tyrT-purU,purU 0.232 46
citG-citX-citF-citE-citD-citC 0.226 47
citA-citB 0.226 47
yhiD 0.223 49
yfdR-yfdS-yfdT 0.223 50
ybjL-rybB,ybjL 0.220 51
ybjM 0.220 51
yncO 0.220 53
yncI 0.220 53
sufD-sufC-sufB-sufA,sufE-sufS-sufD-sufC-sufB-sufA 0.214 55
sdhD-sdhA-sdhB 0.213 56
rpsP5p 0.212 57
hns 0.206 58
hisP-hisM-hisQ-hisJ 0.204 59
tolB-pal-ybgF-lysT-valT-lysW-valZ,tolB-pal-ybgF-lysT,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ-lysQ,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY,tolB-pal-ybgF,tolB-pal-ybgF-lysT-valT-lysW-valZ-lysY-lysZ,tolB-pal-ybgF-lysT-valT 0.203 60
ybdM 0.202 61