Top Promoters Bound by yagI

On this page you can access the list of promoter regions bound by yagI. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
yagB-yagA 1.000 1
yagE-yagF 1.000 1
puuP-puuA,puuP-puuA-ymjE,puuA 0.501 3
puuD-puuR,puuD-puuR-puuC-puuB-puuE 0.501 3
yadD 0.486 5
yhdJ 0.464 6
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH,rplO-rpmD-rpsE-rplR-rplF-rpsH 0.460 7
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN 0.460 7
sgcR-sgcE-sgcA-sgcQ-sgcC-sgcX-sgcB 0.421 9
bfr-bfd 0.421 10
ymfJ 0.406 11
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplR-rplF-rpsH-rpsN-rplE-rplX-rplN 0.395 12
yfgJ-der 0.389 13
rutR 0.378 14
yniA 0.366 15
ugd 0.348 16
pdxY 0.326 17
pspF 0.324 18
pspA-pspB-pspC-pspD-pspE 0.324 18
ygbF-ygbT-casE-casD 0.322 20
lpxM-mepM,mepM 0.322 21
yfiE 0.322 22
eamB 0.322 22
trpA-trpB-trpC 0.311 24
xylR 0.310 25
yfgA-rlmN,rlmN 0.308 26
rydC 0.301 28
ydcA 0.301 28
yncP 0.301 28
sokB 0.301 28
aaaD 0.301 31
tfaD 0.301 31
cvrA 0.297 33
pbl 0.291 34
yfiP,yfiP-pka 0.288 35
yqeC 0.287 36
fruA-fruK-fruB 0.286 37
setB 0.286 37
mepS 0.279 39
dut-ttk 0.275 40
yoeF 0.275 41
nupX 0.269 42
plsX-fabH-fabD-fabG 0.258 43
ryeA 0.257 44
sdsR,pphA-sdsR 0.257 44
ratB 0.257 47
ratB-ratA 0.257 47
smpB-ssrA,smpB 0.257 47
ygaM 0.256 49
phoU 0.255 50
ydcI 0.252 51
ydcJ 0.252 51
yggE-argO-mscS,mscS 0.248 53
yfcD 0.242 54
ribE-nusB-thiL,ribE-nusB-thiL-pgpA 0.237 55
ybcH-nfrA,nfrA 0.236 56
yfbR 0.231 57
fsr 0.217 58
ushA 0.217 58
yfdK-yfdL-yfdM-yfdN-oweS 0.216 60
yfdP-yfdQ 0.216 60
nuoN-nuoM 0.215 62
nagC-nagA,nagA 0.215 63
hslJ-ldhA,ldhA 0.213 64
fucU 0.212 65
yneE 0.210 66
speD 0.208 67
sslE 0.207 68
yqeI-yqeJ 0.204 69