Top Promoters Bound by yagI

On this page you can access the list of promoter regions bound by yagI. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
yagE-yagF 1.000 1
yagB-yagA 1.000 2
puuP-puuA,puuP-puuA-ymjE,puuA 0.501 3
puuD-puuR,puuD-puuR-puuC-puuB-puuE 0.501 4
yadD 0.486 5
yhdJ 0.464 6
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN 0.460 7
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH,rplO-rpmD-rpsE-rplR-rplF-rpsH 0.460 8
sgcR-sgcE-sgcA-sgcQ-sgcC-sgcX-sgcB 0.421 9
bfr-bfd 0.421 10
ymfJ 0.406 11
rpmJ-secY-rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX-rplN,rplR-rplF-rpsH-rpsN-rplE-rplX-rplN 0.395 12
yfgJ-der 0.389 13
rutR 0.378 14
yniA 0.366 15
ugd 0.348 16
pdxY 0.326 17
pspF 0.324 18
pspA-pspB-pspC-pspD-pspE 0.324 18
ygbF-ygbT-casE-casD 0.322 20
lpxM-mepM,mepM 0.322 21
eamB 0.322 22
yfiE 0.322 23
trpA-trpB-trpC 0.311 24
xylR 0.310 25
yfgA-rlmN,rlmN 0.308 26
rydC 0.301 27
ydcA 0.301 27
sokB 0.301 29
yncP 0.301 30
aaaD 0.301 31
tfaD 0.301 31
cvrA 0.297 33
pbl 0.291 34
yfiP,yfiP-pka 0.288 35
yqeC 0.287 36
fruA-fruK-fruB 0.286 37
setB 0.286 38
mepS 0.279 39
dut-ttk 0.275 40
yoeF 0.275 41
nupX 0.269 42
plsX-fabH-fabD-fabG 0.258 43
sdsR,pphA-sdsR 0.257 44
ryeA 0.257 45
ratB-ratA 0.257 46
smpB-ssrA,smpB 0.257 47
ratB 0.257 48
ygaM 0.256 49
phoU 0.255 50
ydcI 0.252 51
ydcJ 0.252 51
yggE-argO-mscS,mscS 0.248 53
yfcD 0.242 54
ribE-nusB-thiL,ribE-nusB-thiL-pgpA 0.237 55
ybcH-nfrA,nfrA 0.236 56
yfbR 0.231 57
fsr 0.217 58
ushA 0.217 59
yfdK-yfdL-yfdM-yfdN-oweS 0.216 60
yfdP-yfdQ 0.216 60
nuoN-nuoM 0.215 62
nagC-nagA,nagA 0.215 63
hslJ-ldhA,ldhA 0.213 64
fucU 0.212 65
yneE 0.210 66
speD 0.208 67
sslE 0.207 68
yqeI-yqeJ 0.204 69
ybaE 0.198 70
cof 0.198 70
carA,carA-carB 0.198 72
folX-yfcH 0.197 73
copA 0.196 74
glsA-ybaT 0.196 74
yfdE-yfdV-oxc-frc-yfdX 0.196 76
ypdI 0.196 76
glmS-glmU 0.195 78
cysM-cysA-cysW-cysU-cysP,cysA-cysW-cysU-cysP 0.193 79
ycjG 0.192 80
yhjH 0.191 81
kdgK 0.191 82
ycjW 0.190 83
ycjX,ycjX-ycjF-tyrR,ycjX-ycjF 0.190 84
yegQ,yegQ-cyaR 0.189 85
yghO 0.188 86
ynaI 0.188 87
yejO 0.188 88
narP 0.188 88
insH-1 0.188 94
mmuP-mmuM 0.188 94
insH-2-nmpC,insH-2 0.188 94
gltK-gltJ-gltI-insH-3,gltJ-gltI-insH-3,insH-3 0.188 94
insH-7 0.188 94
insH-8 0.188 94
insH-10 0.188 94
yhcF 0.188 94
insH-11 0.188 94
insH-4,insH-4-ynaJ 0.188 99
insH21 0.188 100
insH-9 0.188 100
ycfP 0.188 102
ygaC 0.187 103
codA 0.181 104
rnlB 0.180 105
pfkA 0.178 106
racR 0.178 107
insF-2-insE-2-insEF2 0.177 108
kdpE 0.173 109
mreD-mreC 0.170 110
cadA-cadB 0.168 111
rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX,rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE-rplX 0.168 112
rplO-rpmD-rpsE-rplR-rplF-rpsH-rpsN-rplE 0.168 113
gdhA 0.168 114
ynjH 0.168 115
gadC 0.167 116
baeR-yegP 0.166 117
ppc 0.166 118
torT 0.166 119
cysB 0.165 120
acrB 0.163 121
ygjQ 0.163 122
fumB-dcuB 0.161 123
dinG 0.161 124
yjgH 0.159 125
pheL-pheA 0.159 126
raiA,raiA-pheL 0.159 127
efeO-efeB 0.159 128
tfaX 0.157 129
ybcY 0.157 130
rdgB-yggW 0.154 131
mngB 0.154 132
eutM-eutD-eutT-eutQ-eutP-eutS 0.152 133
purB-hflD-mnmA,mnmA 0.148 134
ygcS 0.148 135
recJ-dsbC,prfB-recJ-dsbC,dsbC 0.148 136
yghQ 0.147 137
alaA-yfbR,alaA 0.147 138
erpA 0.146 139
yadW 0.146 140
ybfL 0.145 141
topB-selD 0.144 142
yjgR 0.143 143
yrhB 0.141 144
yrhD 0.141 145
speB 0.140 146
yjiA 0.137 147
yjiA-yjiX 0.137 147
yeaD 0.135 149
ybeF 0.135 150
rpsO,pnp-rpsO 0.135 151
uhpT 0.134 152
panD 0.134 153
glgP-glgA,glgA 0.133 154
sfmC-sfmD 0.133 155
katE 0.132 156
cedA 0.132 157
ybfD 0.132 158
yhhI 0.132 159
yjaB 0.131 160
metA 0.131 160
yneJ 0.131 162
glk 0.131 163
yfeO 0.131 164
gtrA-gtrB-gtrS 0.130 165
yhcO 0.130 166
ydhP 0.129 167
yghB 0.129 168
yiaG 0.128 169
cspA-insJ-insK,cspA 0.128 170
rpoH 0.128 171
perR 0.127 172
ygjV 0.127 173
infB-nusA 0.127 174
apaH-apaG-rsmA-pdxA-surA,surA,rsmA-pdxA-surA 0.126 175
yajL-panE 0.126 176
hscA,iscX-fdx-hscA 0.125 177
oppA-oppB-oppC-oppD-oppF,oppA-oppB,oppA-oppB-oppC 0.125 178
thiD-thiM-rcnR,rcnR 0.123 179
rbsD-rbsA-rbsC-rbsB,rbsD-rbsA-rbsC-rbsB-rbsK-rbsR 0.123 180
accD,cvpA-dedD-folC-accD,dedD-folC-accD 0.123 181
ycaK 0.123 182
yffS 0.122 183
rzpQ-rrrQ-ydfR-essQ 0.121 184
ynfU 0.121 184
nmpC 0.121 186
essD-rrrD-rzpD 0.121 187
fliL-fliM-fliN-fliO-fliP-fliQ-fliR 0.120 188
intF 0.120 189
nc1 0.120 190
insI-1 0.120 192
insD-2-insC-2-insCD2 0.120 192
insI-2 0.120 192
insI-3 0.120 194
secM-secA-mutT,secM-secA,secM 0.119 195
yceB-grxB,grxB 0.118 196
glnU-leuW-metT-asnB,asnB,glnW-glnU-leuW-metT-asnB 0.118 197
yneG-glsB-sad,sad 0.117 198
brnQ-proY 0.116 199
rhoL-rho,rhoL-rho-wecA,rhoL-rho-wecA-wzzE,rhoL 0.115 200
atpC-atpD-atpG-atpA-atpH-atpF-atpE-atpB-atpI,atpA-atpH-atpF-atpE-atpB-atpI,atpH-atpF-atpE-atpB-atpI 0.115 201
pdxY-tyrS,tyrS 0.115 202
ampG 0.114 203
ybgS 0.113 204
aroG 0.113 204
gmr,gmr-yciZ 0.112 206
ymiB 0.112 207
yejH 0.112 208
bcr-rsuA,rsuA 0.112 209
hcaE-hcaF-hcaC-hcaB-hcaD 0.111 210
selC 0.111 211
yicI-yicJ 0.111 212
rpoS 0.111 213
dapD,yaeI-dapD,yaeH-yaeI-dapD 0.111 214
actP 0.111 215
ybeT 0.111 216
thiQ-thiP-thiB 0.110 217
sroA 0.110 218
fdoH 0.110 219
deoD 0.109 220
treC 0.108 221
mgtA5p 0.108 221
ygbL-ygbM 0.108 223
endA,endA-rsmE-gshB-yqgE-yqgF 0.107 224
ettA 0.107 225
deoC-deoA,deoC-deoA-deoB,deoC-deoA-deoB-deoD 0.107 226
yjjW-yjjI,yjjI 0.107 227
uhpC-uhpB-uhpA,uhpB-uhpA 0.107 228
tktB 0.106 229
hslR-hslO 0.106 230
lspA-fkpB-ispH 0.105 231
yahM 0.104 232
yhhM 0.103 233
yhhN,yhhN-zntA 0.103 234
ykgP 0.103 235
eaeH-insE-1-insF-1-insEF1 0.103 236
gsk 0.102 237
aes 0.102 238
mscM-psd,psd 0.102 239
ndk,yfgA-rlmN-ndk 0.102 240
rbsB-rbsK-rbsR 0.101 241
kdgT 0.101 242
tsaD 0.101 243
rpsU-dnaG-rpoD,rpsU,rpsU-dnaG 0.101 243
yqeA 0.100 245
eutR-eutK-eutL-eutC-eutB,eutK-eutL-eutC-eutB 0.100 246
intZ 0.100 247