Top Promoters Bound by yddM

On this page you can access the list of promoter regions bound by yddM. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs) Scores Ranks
yddM 1.000 1
ybhD 0.324 2
ybhH 0.324 2
ytfP 0.272 4
chpS-chpB 0.272 5
csiR 0.269 6
pdxA-surA-lptD,surA-lptD,lptD 0.257 7
djlA,djlA-yabP-yabQ 0.257 7
relA,mazE-relA,mazG-mazF-mazE-relA,mazF-mazE-relA 0.241 9
ydhT-ydhU-ydhX 0.220 10
tdcF-tdcE-tdcD-tdcC-tdcB-tdcG 0.207 11
sspB-sspA 0.206 12
lptE 0.204 13
rnpB 0.204 14
pta 0.191 15
yqhJ 0.187 16
lysP 0.185 17
yhhM 0.180 18
yhhN,yhhN-zntA 0.180 19
psuT 0.177 20
rpoH 0.174 21
luxS 0.174 22
rraA-menA-hslU-hslV,hslU-hslV 0.168 23
nagZ-ycfP 0.166 24
wcaM-wcaL-wcaK 0.164 25
rsmF-yebV,rsmF 0.156 26
ibsB 0.152 27
mdtA,mdtA-mdtB-mdtC-iceT-baeS-baeR 0.152 27
yfcI 0.150 29
naRNA3 0.147 30
ydeM 0.145 31
naRNA2 0.144 32
naRNA1 0.144 32
yjdM 0.144 34
afuC-afuB-insB-2-insA-2-insAB2 0.144 35
crfC-yjcZ 0.143 36
lptA-lptB,lptA-lptB-rpoN,lptA-lptB-rpoN-hpf 0.141 37
pheL-pheA 0.140 38
galU 0.140 39
yqhG 0.135 40
ydcI 0.130 41
ydcJ 0.130 42
yjcE 0.130 43
ydiF-ydiO 0.129 44
aspC 0.129 45
yahK 0.129 46
mutM-rpmG-rpmB,rpmG-rpmB 0.124 47
mutM 0.124 48
mnmH,ylbG-mnmH 0.124 49
ygbF-ygbT-casE-casD 0.123 50
yihA 0.123 51
csrC 0.123 51
yihI,yihI-hemN 0.123 53
mglC-mglA-mglB,mglA-mglB 0.122 54
insL-3 0.122 55
yihG 0.118 56
polA-spf,polA 0.118 56
yjiE 0.118 58
yegH 0.117 59
wcaB-wcaA-wzc-wzb-wza 0.117 60
yfcL-epmC-yfcA-mepA-aroC,epmC-yfcA-mepA-aroC 0.116 61
csrA-alaS,alaS 0.116 62
dinI 0.112 63
avtA 0.112 64
wzxC-wcaJ-cpsG-cpsB-wcaI-wcaH-wcaG-gmd-wcaF-wcaE-wcaD-wcaC 0.111 65
yhjC,yhjC-yhjD 0.110 66
rraA 0.107 67
gloB 0.106 68
clpP-clpX 0.106 69
yjgA 0.106 70
fucR 0.105 71
fucU 0.105 72
arnB-arnC-arnA-arnD-arnT-arnF-arnE 0.104 73
yacH 0.104 74
ykgL 0.103 75
ygiV 0.103 76
narU 0.102 77
wzxB-rfbC-rfbA 0.102 78