Top Promoters Bound by yncC

On this page you can access the list of promoter regions bound by yncC. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

Type in the header boxes to filter rows. Click headers to sort columns.

Promoter (TUs) Scores Ranks
yiiX 1.000 1
yiiX-metJ,metJ 0.993 2
metB-metL 0.993 2
yiaF 0.910 4
yiaG 0.910 4
yfjJ 0.905 6
cutA-dcuA-aspA,dcuA-aspA,aspA 0.888 7
fxsA 0.888 7
yagI-argF,argF 0.857 10
argL 0.857 10
ykgS 0.857 10
ybcH 0.850 12
intE-xisE-ymfH 0.843 13
ykfJ-prfH 0.836 14
mug 0.772 15
ileX 0.772 15
citB 0.728 17
dmsA-dmsB-dmsC,dmsA-dmsB 0.700 18
vsr-dcm 0.693 19
yejG 0.686 20
qorA 0.670 21
dnaB-alr,dnaB 0.670 21
cspC-yobF 0.663 23
kdpE-kdpD,kdpD 0.644 24
ykgP 0.630 25
eaeH-insE-1-insF-1-insEF1 0.630 25
gadW 0.584 27
gadY 0.584 27
insH-6 0.581 29
treC-treB,treB 0.571 30
yegJ 0.571 31
ppsA 0.570 32
ydiA-aroH,ydiA 0.570 32
fimE 0.569 34
slyA 0.556 35
ydhI-ydhJ-ydhK,ydhI-ydhJ 0.556 35
gss 0.552 37
yghU 0.552 37
ygfS-ygfT 0.515 39
uacT 0.515 39
bluF 0.512 41
yafZ-ykfA,ykfA 0.499 42
yhiS 0.487 43
preT-preA 0.475 44
prpR 0.473 45
murA 0.473 46
murA-ibaG,ibaG 0.473 46
yeeY 0.468 48
mepS 0.461 49
yecN-cmoA-cmoB 0.460 50
cmoA-cmoB 0.460 50
ymiA-yciX 0.456 52
ybeF 0.454 53
yghG 0.444 54
alaX-alaW 0.442 55
yfeC-yfeD 0.442 55
dapD-glnD-map,glnD-map,map 0.429 58
rpsB-tsf-pyrH-frr-tff,rpsB-tff,rpsB-tsf-tff 0.429 58
rpsB-tsf,rpsB-tsf-pyrH-frr 0.429 58
gadX,gadW-gadX 0.427 60
putP 0.410 61
yqiD 0.410 62
ymfI 0.407 63
yhiL 0.404 64
yhiM 0.404 64
dusA-pspG,dusA 0.404 66
yrfG-hslR,yrfG-hslR-hslO 0.404 67
ygiZ 0.396 68
mdaB,mdaB-ygiN 0.396 68
gltF 0.393 70
hisS-ispG-yfgA,yfgA 0.381 71
ykgL 0.380 72
yfiE 0.371 73
insI-1 0.370 74
insI-2 0.370 74
racC 0.363 76
kilR-ydaE 0.363 76
ykiA 0.359 78
ykiD 0.359 78
ecpE-ecpD-ecpC-ecpB 0.357 80
recQ,recQ-rhtC 0.354 81
ftsH-rlmE,rlmE 0.346 82
yhbY 0.346 82
can 0.333 84
yadG-yadH-yadI,yadG-yadH 0.333 84
ymfD-ymfE 0.328 86
yagG-yagH 0.323 87
apaH-apaG-rsmA-pdxA-surA,surA,rsmA-pdxA-surA 0.321 88
nc4 0.318 89
yciE-yciF-yciG,yciG 0.314 90
lrhA 0.311 91
puuC-puuB-puuE 0.309 92
valS 0.309 93
ynfC 0.307 95
ynfD 0.307 95
ynfE-ynfF-ynfG-ynfH-dmsD 0.307 95
pflB-focA,focA 0.307 97
yphA 0.295 98
yjhU 0.292 99
mdtP-mdtO-mdtN 0.286 100
ytcA 0.286 100
codB-codA 0.283 102
yafL 0.278 103
fhuE 0.273 104
hinT-ycfL-lpoB-thiK-nagZ,hinT-ycfL-lpoB-thiK-nagZ-ycfP 0.273 104
yohH 0.271 106
yohP 0.271 106
envR 0.270 108
acrE-acrF 0.270 108
eutM-eutD-eutT-eutQ-eutP-eutS 0.270 110
feoA-feoB-feoC 0.268 111
insO 0.268 112
maa 0.267 113
ydbH-ynbE-ydbL 0.266 114
yfjX-yfjY-yfjZ-ypjF-ypjJ 0.262 115
ydeM 0.262 116
deoR 0.261 117
lysT-valT-lysW-valZ-lysY-lysZ-lysQ,lysT-valT-lysW 0.260 118
rimK-ybjN 0.258 119
glpK 0.258 120
ybfF,fldA-ybfE-ybfF 0.257 121
seqA-pgm-ybfP,seqA-pgm 0.257 121
wbbH-glf 0.243 123
yedJ-yedR 0.243 125
rseX 0.243 125
yedS 0.243 125
ileY 0.242 127
ygaQ 0.242 127
och5 0.239 129
yhjY 0.237 130
tag-yiaC 0.237 130
yneL-hipA-hipB,hipA-hipB 0.237 132
gltW 0.234 133
xapR 0.233 134
ygeQ 0.233 135
paoD-paoC-paoB-paoA 0.230 136
yagU 0.230 136
ygcQ-ygcR 0.226 138
mltD 0.225 139
flgK-flgL 0.222 140
pitB 0.220 141
nadK-recN,nadK 0.220 142
ybiX 0.218 143
yafK-yafQ-dinJ,yafQ-dinJ 0.216 144
tfaX 0.214 145
ydcR 0.214 146
hybB-hybA-hybO-yghW,yghW 0.213 147
sugE 0.212 148
ddlA 0.210 149
iraP-phoA,iraP 0.210 149
pphB 0.207 151
yfaL 0.207 152
nrdA-nrdB-yfaE 0.207 152
pheM-rplT-rpmI-infC,rplT-rpmI-infC,infC 0.207 154
flc 0.205 155
ybeM 0.205 155
ynaK-ydaY 0.204 157
mazF-mazE-relA-rlmD,mazE-relA-rlmD,rlmD 0.203 158
mipA 0.203 159
yeaG-yeaH 0.203 159
aaeB-aaeA-aaeX 0.203 161
aaeR 0.203 161
ryeA 0.203 163
frvR-frvX-frvB-frvA 0.203 164
proV-proW-proX 0.201 165
yrhD 0.201 166
ecpA 0.201 167
yafS 0.201 168