Top Promoters Bound by ybaQ

On this page you can access the list of promoter regions bound by ybaQ. Promoter regions are named by the RegulonDB list of Transcription Units (TUs) that start with the same gene and defined as the 500bp upstream and 200bp downstream of the TU start position. TF promoter scores are scaled so that 1 is the top scoring promoter for a TF and 0 is a the average score across all promoters for the TF. Promoters are then ranked with 1 being the strongest scoring promoter. Only promoters with a TF hit scoring above 0.2 are shown.

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Promoter (TUs)	Scores	Ranks

hybG-hybF-hybE-hybD-hybC	1.000	1
torS	0.960	2
torT	0.960	2
lacI-mhpR	0.937	4
mhpA-mhpB-mhpC-mhpD-mhpF-mhpE	0.937	4
helD	0.915	6
yebW	0.889	7
fabG-acpP	0.824	8
ibpA,ibpB-ibpA	0.763	9
yidQ	0.763	9
codB-codA	0.708	11
yicN	0.681	12
hldE,hldE-sibD-sibE,hldE-sibE	0.657	13
pinH	0.637	14
torD	0.633	15
ybaY	0.600	16
lysA	0.587	17
lysR	0.587	17
perR	0.579	19
insI-1-insN-eyeA	0.579	19
menF-elaB-elaA,elaB-elaA,elaA	0.563	21
lspA-fkpB-ispH	0.552	22
ygjR	0.515	23
yafV	0.490	24
isrC,flu-isrC	0.470	25
flu	0.470	25
ileX	0.465	27
ilvA	0.463	28
macB	0.458	29
panD	0.457	30
yadD	0.457	30
ydeA	0.455	32
yhfL	0.451	33
frlA-frlB-frlD-yhfR-frlC	0.451	33
ybfP	0.449	35
ygeR,glyU-ygeR	0.446	36
rbsD-rbsA-rbsC-rbsB,rbsD-rbsA-rbsC-rbsB-rbsK-rbsR	0.440	37
ychA-kdsA-rdlA	0.439	38
apaH-apaG-rsmA-pdxA,rsmA-pdxA	0.429	39
yniD	0.426	40
insZ	0.422	41
mtr	0.422	42
yceA	0.416	43
epmB	0.416	44
ecnA-ecnB	0.416	44
leuU-secG-glmM,glmM	0.414	46
obgE-yhbE	0.412	47
ydcP	0.409	48
ppk,ppk-ppx	0.407	49
ybgD	0.402	50
recQ,recQ-rhtC	0.400	51
uhpC-uhpB-uhpA-ilvN-ilvB-ivbL,uhpA-ilvN-ilvB-ivbL,ivbL,ilvN-ilvB-ivbL	0.395	53
istR	0.395	53
tisB	0.395	53
ycfJ	0.394	55
rpoS-nlpD	0.393	56
iscX-fdx-hscA-hscB	0.381	57
hscA-hscB-iscA	0.381	57
kdgT	0.376	59
lpxT	0.375	60
ubiX-purF-cvpA,purF-cvpA	0.374	61
ubiF	0.373	62
murJ	0.370	63
ymdA-ymdB-clsC,ymdA-ymdB,ymdA	0.357	64
ymdB,ymdB-clsC	0.357	64
ybdG	0.356	66
dtpC	0.354	67
hypB-hypC-hypD-hypE-fhlA,hypB-hypC-hypD-hypE	0.354	68
ygbL-ygbM	0.351	69
polB	0.347	70
ybdG-nfsB,nfsB	0.338	71
dedD-folC	0.338	72
ygeA	0.335	73
ssrA	0.333	74
pdxY-tyrS,tyrS	0.333	75
luxS-gshA-yqaA-yqaB,yqaA-yqaB	0.331	76
bamA,bamA-skp,bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE	0.327	77
rzoD	0.325	79
rzoR	0.325	79
trkG	0.325	79
yeiI	0.320	81
hupB,hupB-ppiD	0.319	82
pnuC	0.318	83
arcB	0.317	84
flgN-flgM	0.316	85
exuR	0.312	86
glnE-ygiF	0.311	87
ygiM,ygiM-cca	0.311	87
omrB	0.310	89
galR	0.310	89
creD	0.308	91
yjbB	0.305	92
zwf	0.304	93
yebK-pykA,yebK	0.304	93
dksA-sfsA-ligT,ligT	0.304	95
pssL	0.303	96
pssA,pssA-yfiM	0.303	96
dhaM-dhaL-dhaK	0.301	98
pbpG	0.298	99
ythB	0.293	100
yihN	0.291	101
gpp	0.289	102
ulaD-ulaE	0.287	103
ynaK-ydaY	0.285	104
yaaU	0.285	105
pheV	0.282	106
yeeR-yeeS-yeeT-cbeA-cbtA-yeeW	0.281	107
tesB	0.280	108
pmrD	0.279	109
yabI	0.277	110
rhmA-rhmT-rhmD-yfaX,rhmD-yfaX	0.274	111
yfjP-yfjQ	0.273	112
yegJ	0.270	113
gcl-hyi-glxR-ybbW-allB-ybbY-glxK	0.270	114
gpp-rhlB,rhlB	0.268	115
rhoL-rho,rhoL-rho-wecA,rhoL-rho-wecA-wzzE,rhoL	0.268	115
yhjK	0.267	117
uxuR	0.266	118
citB	0.266	119
ascB	0.265	120
umpH-nagC-nagA-nagB,nagC-nagA-nagB	0.263	121
nagE	0.263	121
uspF	0.262	123
truC-yqcC-csrB	0.261	124
msrA	0.261	125
tamA-tamB-ytfP,tamA	0.261	125
uidR	0.260	127
glnK-amtB	0.260	128
ybjN,ybjN-potF	0.260	129
ampG	0.260	130
rnk-rna,rna	0.259	131
entD-fepA,fepA	0.259	132
fes-entF-fepE-ybdZ,fes-ybdZ	0.259	132
aldA	0.258	134
aidB	0.258	135
naRNA6	0.258	138
naRNA5	0.258	138
naRNA4	0.258	138
naRNA3	0.258	138
naRNA2	0.258	138
naRNA1	0.258	138
pdxK	0.256	142
yfeK-yfeS	0.256	142
aes	0.256	144
alx	0.256	145
ycaN	0.252	146
ycaK	0.252	146
yjgA	0.251	148
pmbA	0.251	148
yecN-cmoA-cmoB	0.251	150
fadE	0.250	151
gmhA,gmhA-yafJ	0.250	151
ompA-sulA,sulA	0.250	153
sxy	0.250	153
yajO-dxs-ispA-xseB,dxs-ispA-xseB	0.250	155
thiI	0.250	155
infB	0.249	157
rpoN-hpf-ptsN-yhbJ-npr,rpoN-hpf-ptsN-yhbJ	0.248	158
mutL-miaA-hfq-hflX-hflK-hflC,mutL-miaA-hfq	0.247	159
dicF	0.246	160
nrdG	0.246	161
cspH	0.244	163
cspG	0.244	163
ymcF	0.244	163
ymcE-gnsA	0.244	163
grpE	0.243	166
nadK-recN,nadK	0.243	166
mdtG	0.242	168
caiF	0.241	169
ygfM-xdhD	0.240	170
ybfF,fldA-ybfE-ybfF	0.240	171
seqA-pgm-ybfP,seqA-pgm	0.240	171
ycbL	0.238	173
yhjX	0.237	174
polA-spf,polA	0.236	175
ydhB	0.236	176
ydhC	0.236	176
yeiW	0.235	178
yeiP,yeiP-yeiQ	0.235	178
pncB	0.234	180
pepN	0.234	180
ynfA	0.232	182
yhhN,yhhN-zntA	0.232	183
ydjM	0.231	184
ypfJ-purC,purC	0.230	185
nc8	0.230	186
yhhS	0.230	187
tdk	0.229	188
yadI	0.227	189
yadE	0.227	189
ybbN	0.227	191
hyaD-hyaE	0.226	192
yfiF	0.226	193
yfiP,yfiP-pka	0.226	193
ldtA-cobT-cobS-cobU,cobT-cobS-cobU,cobS-cobU	0.225	195
yiaA	0.225	196
yiaB	0.225	196
yeaE	0.225	198
ysaE	0.224	200
hokA	0.224	200
insJ	0.224	200
insJK	0.224	200
gcd	0.223	203
hpt,hpt-yadG-yadH,hpt-yadG-yadH-yadI	0.223	203
thrB-thrC,thrB	0.222	205
rpoS-nlpD-pcm	0.222	206
cstA,cstA-ybdD	0.222	207
yjfN	0.221	208
leuV-leuP-leuQ	0.220	209
proL	0.219	210
gloA-rnt,gloA	0.219	211
yfjX-yfjY-yfjZ-ypjF-ypjJ	0.218	212
fabA	0.217	213
araD-araA-araB,araA-araB	0.217	214
araC,araC-yabI	0.217	214
gadX-gadA	0.216	216
flhC-flhD	0.216	217
pdxY	0.215	218
yjeM,yjeM-yjeN-yjeO	0.215	219
ybjE	0.214	220
ahpF	0.211	221
ycjZ	0.211	222
ppiD-ybaV-fadM,ppiD	0.210	223
yceM	0.209	224
yrdB-aroE-tsaC-yrdD	0.208	225
yqgD	0.207	226
yqjC-yqjD-yqjE-yqjK	0.206	227
yjcB	0.205	228
yjcC	0.205	228
tpiA	0.204	230
rclC-rclB-rclA	0.202	231
ykgD	0.202	231
yraP	0.202	233
ygeP	0.201	234
yhcC	0.201	235
yjfZ	0.201	236
ytfA	0.201	236
yccT	0.201	238
yccU	0.201	238
ghrB	0.200	240
yegW-yegX-thiD-thiM,thiD-thiM	0.200	241